RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 MRPL50Q8N5N7 158 aaKnown RBP8.11□□□□□ -1.11
HMGB1P19-201ENST00000517578 FBXW7Q969H0 707 aa8.11□□□□□ -1.11
HMGB1P19-201ENST00000517578 WNT2BQ93097 391 aa8.1□□□□□ -1.11
HMGB1P19-201ENST00000517578 NBPF3Q9H094 633 aa8.1□□□□□ -1.11
HMGB1P19-201ENST00000517578 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.1□□□□□ -1.11
HMGB1P19-201ENST00000517578 RABGEF1Q9UJ41 708 aa8.09□□□□□ -1.11
HMGB1P19-201ENST00000517578 GOLGA8CPA6NN73 597 aa8.08□□□□□ -1.12
HMGB1P19-201ENST00000517578 CFAP44Q96MT7 982 aa8.07□□□□□ -1.12
HMGB1P19-201ENST00000517578 EPAS1Q99814 870 aa8.07□□□□□ -1.12
HMGB1P19-201ENST00000517578 C6orf132Q5T0Z8 1188 aa8.06□□□□□ -1.12
HMGB1P19-201ENST00000517578 PAXIP1Q6ZW49 1069 aaPredicted RBP8.06□□□□□ -1.12
HMGB1P19-201ENST00000517578 SPRYD3Q8NCJ5 442 aa8.05□□□□□ -1.12
HMGB1P19-201ENST00000517578 DDX12PQ92771 950 aa8.05□□□□□ -1.12
HMGB1P19-201ENST00000517578 PDIA6Q15084 440 aa8.04□□□□□ -1.12
HMGB1P19-201ENST00000517578 IFFO2Q5TF58 517 aa8.04□□□□□ -1.12
HMGB1P19-201ENST00000517578 RBM33Q96EV2 1170 aaKnown RBP8.03□□□□□ -1.12
HMGB1P19-201ENST00000517578 KIAA1468Q9P260 1216 aa8.03□□□□□ -1.12
HMGB1P19-201ENST00000517578 ONECUT3O60422 494 aaPredicted RBP8.02□□□□□ -1.13
HMGB1P19-201ENST00000517578 TRIM6-TRIM34B2RNG4 842 aa8.01□□□□□ -1.13
HMGB1P19-201ENST00000517578 BCAMP50895 628 aa8.01□□□□□ -1.13
HMGB1P19-201ENST00000517578 LAPTM4BQ86VI4 370 aa8.01□□□□□ -1.13
HMGB1P19-201ENST00000517578 ANKK1Q8NFD2 765 aa8.01□□□□□ -1.13
HMGB1P19-201ENST00000517578 EN1Q05925 392 aaPredicted RBP8□□□□□ -1.13
HMGB1P19-201ENST00000517578 NBR1Q14596 966 aa8□□□□□ -1.13
HMGB1P19-201ENST00000517578 TSR1Q2NL82 804 aaKnown RBP8□□□□□ -1.13
HMGB1P19-201ENST00000517578 ZFRQ96KR1 1074 aaKnown RBP8□□□□□ -1.13
HMGB1P19-201ENST00000517578 SEPT9Q9UHD8 586 aaPredicted RBP8□□□□□ -1.13
HMGB1P19-201ENST00000517578 SOWAHBA6NEL2 793 aa7.99□□□□□ -1.13
HMGB1P19-201ENST00000517578 E2F4Q16254 413 aa7.98□□□□□ -1.13
HMGB1P19-201ENST00000517578 A0A0G2JS52 829 aa7.97□□□□□ -1.13
HMGB1P19-201ENST00000517578 SPDYE16A6NNV3 312 aaPredicted RBP7.97□□□□□ -1.13
HMGB1P19-201ENST00000517578 PRIM1P49642 420 aaKnown RBP7.97□□□□□ -1.13
HMGB1P19-201ENST00000517578 TSKSQ9UJT2 592 aa7.97□□□□□ -1.13
HMGB1P19-201ENST00000517578 ARIH1Q9Y4X5 557 aaPredicted RBP7.97□□□□□ -1.13
HMGB1P19-201ENST00000517578 MAP3K7O43318 606 aa7.96□□□□□ -1.14
HMGB1P19-201ENST00000517578 ITGBL1O95965 494 aaPredicted RBP7.96□□□□□ -1.14
HMGB1P19-201ENST00000517578 FAM98CQ17RN3 349 aaKnown RBP7.95□□□□□ -1.14
HMGB1P19-201ENST00000517578 WBP1LQ9NX94 342 aa7.95□□□□□ -1.14
HMGB1P19-201ENST00000517578 RGS20O76081 388 aa7.93□□□□□ -1.14
HMGB1P19-201ENST00000517578 NYAP1Q6ZVC0 841 aa7.92□□□□□ -1.14
HMGB1P19-201ENST00000517578 FAM198AQ9UFP1 575 aa7.92□□□□□ -1.14
HMGB1P19-201ENST00000517578 GRXCR2A6NFK2 248 aa7.91□□□□□ -1.14
HMGB1P19-201ENST00000517578 CDCA7LQ96GN5 454 aa7.91□□□□□ -1.14
HMGB1P19-201ENST00000517578 WDR70Q9NW82 654 aa7.91□□□□□ -1.14
HMGB1P19-201ENST00000517578 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.91□□□□□ -1.14
HMGB1P19-201ENST00000517578 C3orf80F5H4A9 247 aa7.9□□□□□ -1.14
HMGB1P19-201ENST00000517578 OSBPP22059 807 aa7.9□□□□□ -1.14
HMGB1P19-201ENST00000517578 ERICH6Q7L0X2 663 aa7.9□□□□□ -1.14
HMGB1P19-201ENST00000517578 PACS2Q86VP3 889 aa7.9□□□□□ -1.14
HMGB1P19-201ENST00000517578 LRCH3Q96II8 777 aa7.9□□□□□ -1.14
HMGB1P19-201ENST00000517578 CDHR5Q9HBB8 845 aa7.9□□□□□ -1.14
HMGB1P19-201ENST00000517578 HPS5Q9UPZ3 1129 aa7.9□□□□□ -1.14
HMGB1P19-201ENST00000517578 SMAPO00193 183 aa7.89□□□□□ -1.15
HMGB1P19-201ENST00000517578 PRSS12P56730 875 aa7.89□□□□□ -1.15
HMGB1P19-201ENST00000517578 PLCB2Q00722 1185 aa7.89□□□□□ -1.15
HMGB1P19-201ENST00000517578 TSR3Q9UJK0 312 aaKnown RBP7.89□□□□□ -1.15
HMGB1P19-201ENST00000517578 CERKQ8TCT0 537 aa7.87□□□□□ -1.15
HMGB1P19-201ENST00000517578 TSHZ2Q9NRE2 1034 aa7.87□□□□□ -1.15
HMGB1P19-201ENST00000517578 HAP1P54257 671 aaPredicted RBP7.85□□□□□ -1.15
HMGB1P19-201ENST00000517578 KCNC4Q03721 635 aa7.85□□□□□ -1.15
HMGB1P19-201ENST00000517578 SAMD7Q7Z3H4 446 aa7.85□□□□□ -1.15
HMGB1P19-201ENST00000517578 TATDN2Q93075 761 aa7.84□□□□□ -1.15
HMGB1P19-201ENST00000517578 NBPF26B4DH59 902 aa7.83□□□□□ -1.16
HMGB1P19-201ENST00000517578 IRX2Q9BZI1 471 aaPredicted RBP7.83□□□□□ -1.16
HMGB1P19-201ENST00000517578 NPDC1Q9NQX5 325 aaPredicted RBP7.83□□□□□ -1.16
HMGB1P19-201ENST00000517578 RBM27Q9P2N5 1060 aaKnown RBP7.83□□□□□ -1.16
HMGB1P19-201ENST00000517578 PNMA3Q9UL41 463 aa7.83□□□□□ -1.16
HMGB1P19-201ENST00000517578 PPP4CP60510 307 aa7.82□□□□□ -1.16
HMGB1P19-201ENST00000517578 TTC13Q8NBP0 860 aa7.82□□□□□ -1.16
HMGB1P19-201ENST00000517578 NUDT18Q6ZVK8 323 aa7.81□□□□□ -1.16
HMGB1P19-201ENST00000517578 TJAP1Q5JTD0 557 aa7.8□□□□□ -1.16
HMGB1P19-201ENST00000517578 PADI6Q6TGC4 694 aa7.8□□□□□ -1.16
HMGB1P19-201ENST00000517578 MLLT3P42568 568 aaPredicted RBP7.79□□□□□ -1.16
HMGB1P19-201ENST00000517578 HRCP23327 699 aa7.78□□□□□ -1.16
HMGB1P19-201ENST00000517578 KCNV2Q8TDN2 545 aa7.78□□□□□ -1.16
HMGB1P19-201ENST00000517578 ARHGEF1Q92888 912 aaKnown RBP7.78□□□□□ -1.16
HMGB1P19-201ENST00000517578 MTRQ99707 1265 aa7.77□□□□□ -1.17
HMGB1P19-201ENST00000517578 RNF40O75150 1001 aa7.75□□□□□ -1.17
HMGB1P19-201ENST00000517578 APLP1P51693 650 aa7.75□□□□□ -1.17
HMGB1P19-201ENST00000517578 SWT1Q5T5J6 900 aaKnown RBP7.74□□□□□ -1.17
HMGB1P19-201ENST00000517578 EYA1Q99502 592 aa7.74□□□□□ -1.17
HMGB1P19-201ENST00000517578 ZNF516Q92618 1163 aa7.73□□□□□ -1.17
HMGB1P19-201ENST00000517578 IL21Q9HBE4 155 aa7.73□□□□□ -1.17
HMGB1P19-201ENST00000517578 PTGDRQ13258 359 aa7.72□□□□□ -1.17
HMGB1P19-201ENST00000517578 HDGFP51858 240 aaKnown RBP7.71□□□□□ -1.18
HMGB1P19-201ENST00000517578 PPP1R18Q6NYC8 613 aa7.7□□□□□ -1.18
HMGB1P19-201ENST00000517578 SLF2Q8IX21 1173 aa7.7□□□□□ -1.18
HMGB1P19-201ENST00000517578 NKX2-3Q8TAU0 364 aa7.68□□□□□ -1.18
HMGB1P19-201ENST00000517578 Q6ZNB5 142 aa7.67□□□□□ -1.18
HMGB1P19-201ENST00000517578 NECTIN2Q92692 538 aa7.67□□□□□ -1.18
HMGB1P19-201ENST00000517578 KDM2AQ9Y2K7 1162 aa7.67□□□□□ -1.18
HMGB1P19-201ENST00000517578 SLC24A1O60721 1099 aa7.66□□□□□ -1.18
HMGB1P19-201ENST00000517578 COPS2P61201 443 aa7.66□□□□□ -1.18
HMGB1P19-201ENST00000517578 PRKD2Q9BZL6 878 aa7.66□□□□□ -1.18
HMGB1P19-201ENST00000517578 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.66□□□□□ -1.18
HMGB1P19-201ENST00000517578 ADGRG1Q9Y653 693 aa7.66□□□□□ -1.18
HMGB1P19-201ENST00000517578 LCE2BO14633 110 aa7.65□□□□□ -1.18
HMGB1P19-201ENST00000517578 SEMA3EO15041 775 aa7.65□□□□□ -1.18
HMGB1P19-201ENST00000517578 VSIG10Q8N0Z9 540 aa7.65□□□□□ -1.18
HMGB1P19-201ENST00000517578 DNAJB2P25686 324 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms