RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 EIF2AK4Q9P2K8 1649 aaKnown RBP21.6■■□□□ 1.05
NUP54-216ENST00000514901 RIMS1Q86UR5 1692 aaKnown RBP21.6■■□□□ 1.05
NUP54-216ENST00000514901 ANKRD50Q9ULJ7 1429 aa21.57■■□□□ 1.04
NUP54-216ENST00000514901 WASHC2CQ9Y4E1 1318 aa21.56■■□□□ 1.04
NUP54-216ENST00000514901 FAM135AQ9P2D6 1515 aa21.56■■□□□ 1.04
NUP54-216ENST00000514901 RNF17Q9BXT8 1623 aaKnown RBP21.55■■□□□ 1.04
NUP54-216ENST00000514901 ZMYM3Q14202 1370 aa21.54■■□□□ 1.04
NUP54-216ENST00000514901 CEBPAP49715 358 aaPredicted RBP21.52■■□□□ 1.04
NUP54-216ENST00000514901 PLPPR3Q6T4P5 718 aa21.52■■□□□ 1.04
NUP54-216ENST00000514901 KANK1Q14678 1352 aa21.51■■□□□ 1.03
NUP54-216ENST00000514901 MROH2AA6NES4 1674 aa21.5■■□□□ 1.03
NUP54-216ENST00000514901 KDM5DQ9BY66 1539 aa21.5■■□□□ 1.03
NUP54-216ENST00000514901 SETD1BQ9UPS6 1966 aaKnown RBP21.49■■□□□ 1.03
NUP54-216ENST00000514901 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.49■■□□□ 1.03
NUP54-216ENST00000514901 CLTCQ00610 1675 aaKnown RBP21.48■■□□□ 1.03
NUP54-216ENST00000514901 PRDM15P57071 1507 aaPredicted RBP21.45■■□□□ 1.02
NUP54-216ENST00000514901 DEPDC5O75140 1603 aa21.45■■□□□ 1.02
NUP54-216ENST00000514901 MROH1Q8NDA8 1641 aa21.45■■□□□ 1.02
NUP54-216ENST00000514901 C3P01024 1663 aa21.45■■□□□ 1.02
NUP54-216ENST00000514901 HFM1A2PYH4 1435 aa21.45■■□□□ 1.02
NUP54-216ENST00000514901 NPATQ14207 1427 aa21.45■■□□□ 1.02
NUP54-216ENST00000514901 ABCC3O15438 1527 aa21.45■■□□□ 1.02
NUP54-216ENST00000514901 NAIPQ13075 1403 aa21.44■■□□□ 1.02
NUP54-216ENST00000514901 ZC3H13Q5T200 1668 aaKnown RBP21.44■■□□□ 1.02
NUP54-216ENST00000514901 PZPP20742 1482 aa21.4■■□□□ 1.02
NUP54-216ENST00000514901 VWDEQ8N2E2 1590 aa21.4■■□□□ 1.02
NUP54-216ENST00000514901 LMTK2Q8IWU2 1503 aa21.39■■□□□ 1.01
NUP54-216ENST00000514901 ARHGAP31Q2M1Z3 1444 aa21.38■■□□□ 1.01
NUP54-216ENST00000514901 NUP155O75694 1391 aa21.37■■□□□ 1.01
NUP54-216ENST00000514901 ACIN1Q9UKV3 1341 aaKnown RBP21.37■■□□□ 1.01
NUP54-216ENST00000514901 GCC2Q8IWJ2 1684 aa21.37■■□□□ 1.01
NUP54-216ENST00000514901 UNC13BO14795 1591 aa21.36■■□□□ 1.01
NUP54-216ENST00000514901 FBXO31Q5XUX0 539 aaPredicted RBP21.36■■□□□ 1.01
NUP54-216ENST00000514901 CEP152O94986 1710 aa21.35■■□□□ 1.01
NUP54-216ENST00000514901 UHRF1BP1Q6BDS2 1440 aa21.35■■□□□ 1.01
NUP54-216ENST00000514901 CAMSAP1Q5T5Y3 1602 aa21.33■■□□□ 1.01
NUP54-216ENST00000514901 TNRQ92752 1358 aa21.33■■□□□ 1
NUP54-216ENST00000514901 PREX1Q8TCU6 1659 aa21.31■■□□□ 1
NUP54-216ENST00000514901 SETD5Q9C0A6 1442 aa21.31■■□□□ 1
NUP54-216ENST00000514901 LMTK3Q96Q04 1460 aa21.31■■□□□ 1
NUP54-216ENST00000514901 TRIM52Q96A61 297 aa21.3■■□□□ 1
NUP54-216ENST00000514901 RPRD2Q5VT52 1461 aaKnown RBP21.29■■□□□ 1
NUP54-216ENST00000514901 IQGAP3Q86VI3 1631 aa21.29■■□□□ 1
NUP54-216ENST00000514901 ERVK-7P63135 1459 aa21.28■■□□□ 1
NUP54-216ENST00000514901 CFAP65Q6ZU64 1925 aaKnown RBP21.28■■□□□ 1
NUP54-216ENST00000514901 EFCAB6Q5THR3 1501 aa21.28■■□□□ 1
NUP54-216ENST00000514901 TET3O43151 1660 aa21.28■■□□□ 1
NUP54-216ENST00000514901 SPATA31D1Q6ZQQ2 1576 aa21.27■■□□□ 1
NUP54-216ENST00000514901 NLRP1Q9C000 1473 aa21.26■□□□□ 0.99
NUP54-216ENST00000514901 HRCP23327 699 aa21.25■□□□□ 0.99
NUP54-216ENST00000514901 HSPA2P54652 639 aa21.23■□□□□ 0.99
NUP54-216ENST00000514901 A2ML1A8K2U0 1454 aa21.23■□□□□ 0.99
NUP54-216ENST00000514901 NOS1P29475 1434 aa21.22■□□□□ 0.99
NUP54-216ENST00000514901 TRIM26Q12899 539 aaPredicted RBP21.22■□□□□ 0.99
NUP54-216ENST00000514901 SLC52A1Q9NWF4 448 aa21.22■□□□□ 0.99
NUP54-216ENST00000514901 MYO3AQ8NEV4 1616 aa21.22■□□□□ 0.99
NUP54-216ENST00000514901 SLC4A1APQ9BWU0 796 aaKnown RBP21.21■□□□□ 0.99
NUP54-216ENST00000514901 RAB3GAP2Q9H2M9 1393 aa21.21■□□□□ 0.99
NUP54-216ENST00000514901 CEP170BQ9Y4F5 1589 aaPredicted RBP21.2■□□□□ 0.98
NUP54-216ENST00000514901 THEMISQ8N1K5 641 aaPredicted RBP21.2■□□□□ 0.98
NUP54-216ENST00000514901 ZNF142P52746 1687 aaPredicted RBP21.18■□□□□ 0.98
NUP54-216ENST00000514901 PKD2Q13563 968 aa21.17■□□□□ 0.98
NUP54-216ENST00000514901 IDI1Q13907 227 aa21.17■□□□□ 0.98
NUP54-216ENST00000514901 E9PCH4 1651 aa21.17■□□□□ 0.98
NUP54-216ENST00000514901 MPHOSPH9Q99550 1183 aa21.16■□□□□ 0.98
NUP54-216ENST00000514901 STAG3Q9UJ98 1225 aa21.14■□□□□ 0.97
NUP54-216ENST00000514901 UGGT1Q9NYU2 1555 aa21.14■□□□□ 0.97
NUP54-216ENST00000514901 DMRT2Q9Y5R5 561 aa21.13■□□□□ 0.97
NUP54-216ENST00000514901 PTPRTO14522 1441 aa21.12■□□□□ 0.97
NUP54-216ENST00000514901 SYNMO15061 1565 aa21.12■□□□□ 0.97
NUP54-216ENST00000514901 PLA2R1Q13018 1463 aa21.12■□□□□ 0.97
NUP54-216ENST00000514901 ANKLE2Q86XL3 938 aa21.09■□□□□ 0.97
NUP54-216ENST00000514901 KDM5AP29375 1690 aaKnown RBP21.06■□□□□ 0.96
NUP54-216ENST00000514901 PIK3C2BO00750 1634 aa21.05■□□□□ 0.96
NUP54-216ENST00000514901 SPHKAPQ2M3C7 1700 aa21.05■□□□□ 0.96
NUP54-216ENST00000514901 UBR1Q8IWV7 1749 aa21.05■□□□□ 0.96
NUP54-216ENST00000514901 NCKAP5LQ9HCH0 1330 aa21.04■□□□□ 0.96
NUP54-216ENST00000514901 EID1Q9Y6B2 187 aa21.04■□□□□ 0.96
NUP54-216ENST00000514901 STRCQ7RTU9 1775 aa21.04■□□□□ 0.96
NUP54-216ENST00000514901 CHGAP10645 457 aaKnown RBP21.03■□□□□ 0.96
NUP54-216ENST00000514901 HDGFP51858 240 aaKnown RBP21.03■□□□□ 0.96
NUP54-216ENST00000514901 FOXD1Q16676 465 aa21.03■□□□□ 0.96
NUP54-216ENST00000514901 TRPM2O94759 1503 aa21.03■□□□□ 0.96
NUP54-216ENST00000514901 TMEM2Q9UHN6 1383 aa21.02■□□□□ 0.96
NUP54-216ENST00000514901 ADGRB3O60242 1522 aa21.02■□□□□ 0.96
NUP54-216ENST00000514901 TXNDC2Q86VQ3 553 aa21.01■□□□□ 0.95
NUP54-216ENST00000514901 ARHGAP23Q9P227 1491 aa21.01■□□□□ 0.95
NUP54-216ENST00000514901 SLIT1O75093 1534 aa21■□□□□ 0.95
NUP54-216ENST00000514901 TMEM131LA2VDJ0 1609 aa20.97■□□□□ 0.95
NUP54-216ENST00000514901 LTKP29376 864 aa20.97■□□□□ 0.95
NUP54-216ENST00000514901 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.97■□□□□ 0.95
NUP54-216ENST00000514901 MED14O60244 1454 aa20.96■□□□□ 0.95
NUP54-216ENST00000514901 SCAF11Q99590 1463 aaKnown RBP20.96■□□□□ 0.95
NUP54-216ENST00000514901 CCDC144AA2RUR9 1427 aa20.95■□□□□ 0.95
NUP54-216ENST00000514901 CLTCL1P53675 1640 aa20.94■□□□□ 0.94
NUP54-216ENST00000514901 POLR1AO95602 1720 aaPredicted RBP20.94■□□□□ 0.94
NUP54-216ENST00000514901 ZNF326Q5BKZ1 582 aaKnown RBP20.93■□□□□ 0.94
NUP54-216ENST00000514901 NPHP4O75161 1426 aaPredicted RBP20.93■□□□□ 0.94
NUP54-216ENST00000514901 RIMS2Q9UQ26 1411 aa20.93■□□□□ 0.94
NUP54-216ENST00000514901 ANKRD30BQ9BXX2 1392 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms