RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 KANK1Q14678 1352 aa11.5□□□□□ -0.57
LIMCH1-219ENST00000514096 PREX2Q70Z35 1606 aa11.5□□□□□ -0.57
LIMCH1-219ENST00000514096 DAPK1P53355 1430 aa11.5□□□□□ -0.57
LIMCH1-219ENST00000514096 PTPRKQ15262 1439 aa11.5□□□□□ -0.57
LIMCH1-219ENST00000514096 FRMPD1Q5SYB0 1578 aa11.5□□□□□ -0.57
LIMCH1-219ENST00000514096 IDI1Q13907 227 aa11.49□□□□□ -0.57
LIMCH1-219ENST00000514096 SAFB2Q14151 953 aaKnown RBP eCLIP11.49□□□□□ -0.57
LIMCH1-219ENST00000514096 GTF3C3Q9Y5Q9 886 aa11.48□□□□□ -0.57
LIMCH1-219ENST00000514096 ZNF335Q9H4Z2 1342 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-219ENST00000514096 ANKRD50Q9ULJ7 1429 aa11.47□□□□□ -0.57
LIMCH1-219ENST00000514096 STK26Q9P289 416 aa11.47□□□□□ -0.57
LIMCH1-219ENST00000514096 HECW2Q9P2P5 1572 aa11.47□□□□□ -0.57
LIMCH1-219ENST00000514096 PTPN23Q9H3S7 1636 aa11.47□□□□□ -0.57
LIMCH1-219ENST00000514096 ILDR1Q86SU0 546 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-219ENST00000514096 KIAA1107Q9UPP5 1409 aa11.46□□□□□ -0.57
LIMCH1-219ENST00000514096 UHRF1BP1Q6BDS2 1440 aa11.46□□□□□ -0.58
LIMCH1-219ENST00000514096 RICTORQ6R327 1708 aa11.46□□□□□ -0.58
LIMCH1-219ENST00000514096 ABCA6Q8N139 1617 aa11.45□□□□□ -0.58
LIMCH1-219ENST00000514096 ANKLE2Q86XL3 938 aa11.45□□□□□ -0.58
LIMCH1-219ENST00000514096 EID1Q9Y6B2 187 aa11.45□□□□□ -0.58
LIMCH1-219ENST00000514096 MLH3Q9UHC1 1453 aa11.44□□□□□ -0.58
LIMCH1-219ENST00000514096 THEMISQ8N1K5 641 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-219ENST00000514096 ARHGEF40Q8TER5 1519 aa11.44□□□□□ -0.58
LIMCH1-219ENST00000514096 DIP2CQ9Y2E4 1556 aa11.44□□□□□ -0.58
LIMCH1-219ENST00000514096 UBAP1LF5GYI3 381 aa11.44□□□□□ -0.58
LIMCH1-219ENST00000514096 CFAP74Q9C0B2 1584 aa11.44□□□□□ -0.58
LIMCH1-219ENST00000514096 PPP6R1Q9UPN7 881 aa11.44□□□□□ -0.58
LIMCH1-219ENST00000514096 MIA2Q96PC5 1412 aa11.43□□□□□ -0.58
LIMCH1-219ENST00000514096 TNRQ92752 1358 aa11.43□□□□□ -0.58
LIMCH1-219ENST00000514096 SIGLEC1Q9BZZ2 1709 aa11.43□□□□□ -0.58
LIMCH1-219ENST00000514096 NCOA1Q15788 1441 aa11.42□□□□□ -0.58
LIMCH1-219ENST00000514096 KIDINS220Q9ULH0 1771 aa11.42□□□□□ -0.58
LIMCH1-219ENST00000514096 MAGI2Q86UL8 1455 aa11.42□□□□□ -0.58
LIMCH1-219ENST00000514096 ITSN2Q9NZM3 1697 aa11.41□□□□□ -0.58
LIMCH1-219ENST00000514096 LTKP29376 864 aa11.41□□□□□ -0.58
LIMCH1-219ENST00000514096 CNGB1Q14028 1251 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-219ENST00000514096 SIN3AQ96ST3 1273 aa11.38□□□□□ -0.59
LIMCH1-219ENST00000514096 MPHOSPH9Q99550 1183 aa11.38□□□□□ -0.59
LIMCH1-219ENST00000514096 PROSER2Q86WR7 435 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-219ENST00000514096 TMEM132EQ6IEE7 984 aa11.37□□□□□ -0.59
LIMCH1-219ENST00000514096 FER1L4A9Z1Z3 1794 aa11.36□□□□□ -0.59
LIMCH1-219ENST00000514096 POLR3GLQ9BT43 218 aa11.36□□□□□ -0.59
LIMCH1-219ENST00000514096 ANO8Q9HCE9 1232 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-219ENST00000514096 CLTCQ00610 1675 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-219ENST00000514096 BCORL1Q5H9F3 1711 aa11.35□□□□□ -0.59
LIMCH1-219ENST00000514096 KDM5CP41229 1560 aa11.35□□□□□ -0.59
LIMCH1-219ENST00000514096 LMOD2Q6P5Q4 547 aa11.34□□□□□ -0.59
LIMCH1-219ENST00000514096 CCER1Q8TC90 406 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-219ENST00000514096 DMRT2Q9Y5R5 561 aa11.34□□□□□ -0.59
LIMCH1-219ENST00000514096 RAB3GAP2Q9H2M9 1393 aa11.34□□□□□ -0.59
LIMCH1-219ENST00000514096 TRIM26Q12899 539 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-219ENST00000514096 DCAF11Q8TEB1 546 aa11.34□□□□□ -0.59
LIMCH1-219ENST00000514096 CERKQ8TCT0 537 aa11.33□□□□□ -0.6
LIMCH1-219ENST00000514096 RTEL1-TNFRSF6BF6WH68 1400 aa11.33□□□□□ -0.6
LIMCH1-219ENST00000514096 HIRIP3Q9BW71 556 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-219ENST00000514096 ZMYM4Q5VZL5 1548 aa11.32□□□□□ -0.6
LIMCH1-219ENST00000514096 LMTK3Q96Q04 1460 aa11.32□□□□□ -0.6
LIMCH1-219ENST00000514096 UGGT1Q9NYU2 1555 aa11.32□□□□□ -0.6
LIMCH1-219ENST00000514096 NPATQ14207 1427 aa11.31□□□□□ -0.6
LIMCH1-219ENST00000514096 CCDC136Q96JN2 1154 aa11.31□□□□□ -0.6
LIMCH1-219ENST00000514096 MAP3K1Q13233 1512 aa11.31□□□□□ -0.6
LIMCH1-219ENST00000514096 XPCQ01831 940 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-219ENST00000514096 CNTLNQ9NXG0 1405 aa11.3□□□□□ -0.6
LIMCH1-219ENST00000514096 PODXL2Q9NZ53 605 aa11.3□□□□□ -0.6
LIMCH1-219ENST00000514096 DUOX2Q9NRD8 1548 aa11.29□□□□□ -0.6
LIMCH1-219ENST00000514096 DDX17Q92841 729 aaKnown RBP11.29□□□□□ -0.6
LIMCH1-219ENST00000514096 NAIPQ13075 1403 aa11.28□□□□□ -0.6
LIMCH1-219ENST00000514096 FAM135AQ9P2D6 1515 aa11.28□□□□□ -0.6
LIMCH1-219ENST00000514096 INO80Q9ULG1 1556 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-219ENST00000514096 KCNA6P17658 529 aa11.27□□□□□ -0.6
LIMCH1-219ENST00000514096 ADAMTSL3P82987 1691 aa11.27□□□□□ -0.61
LIMCH1-219ENST00000514096 NUTM2BA6NNL0 878 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-219ENST00000514096 NUTM2EB1AL46 878 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-219ENST00000514096 NUTM2AQ8IVF1 878 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-219ENST00000514096 SETD1BQ9UPS6 1966 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-219ENST00000514096 SLC52A1Q9NWF4 448 aa11.27□□□□□ -0.61
LIMCH1-219ENST00000514096 TRAK1Q9UPV9 953 aa11.27□□□□□ -0.61
LIMCH1-219ENST00000514096 CAMSAP1Q5T5Y3 1602 aa11.27□□□□□ -0.61
LIMCH1-219ENST00000514096 SETD5Q9C0A6 1442 aa11.27□□□□□ -0.61
LIMCH1-219ENST00000514096 DNMT1P26358 1616 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-219ENST00000514096 HDGFP51858 240 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-219ENST00000514096 ZBTB7CA1YPR0 619 aa11.25□□□□□ -0.61
LIMCH1-219ENST00000514096 WAPLQ7Z5K2 1190 aa11.25□□□□□ -0.61
LIMCH1-219ENST00000514096 AMOTL2Q9Y2J4 779 aa11.25□□□□□ -0.61
LIMCH1-219ENST00000514096 RRBP1Q9P2E9 1410 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-219ENST00000514096 RTN4Q9NQC3 1192 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-219ENST00000514096 SRCAPQ6ZRS2 3230 aa11.25□□□□□ -0.61
LIMCH1-219ENST00000514096 CFAP70Q5T0N1 1121 aa11.25□□□□□ -0.61
LIMCH1-219ENST00000514096 ANP32EQ9BTT0 268 aa11.25□□□□□ -0.61
LIMCH1-219ENST00000514096 TCOF1Q13428 1488 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-219ENST00000514096 CEP152O94986 1710 aa11.24□□□□□ -0.61
LIMCH1-219ENST00000514096 C3P01024 1663 aa11.24□□□□□ -0.61
LIMCH1-219ENST00000514096 ACIN1Q9UKV3 1341 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-219ENST00000514096 ARHGEF5Q12774 1597 aa11.24□□□□□ -0.61
LIMCH1-219ENST00000514096 POGKQ9P215 609 aa11.23□□□□□ -0.61
LIMCH1-219ENST00000514096 ABCC3O15438 1527 aa11.23□□□□□ -0.61
LIMCH1-219ENST00000514096 KDM5DQ9BY66 1539 aa11.23□□□□□ -0.61
LIMCH1-219ENST00000514096 NCBP3Q53F19 620 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-219ENST00000514096 ERBINQ96RT1 1412 aa11.23□□□□□ -0.61
LIMCH1-219ENST00000514096 ADGRF5Q8IZF2 1346 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms