RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 ATP10AO60312 1499 aa10.79□□□□□ -0.68
NUP54-204ENST00000506098 A2MP01023 1474 aa10.79□□□□□ -0.68
NUP54-204ENST00000506098 ACIN1Q9UKV3 1341 aaKnown RBP10.79□□□□□ -0.68
NUP54-204ENST00000506098 DHX29Q7Z478 1369 aaKnown RBP10.78□□□□□ -0.68
NUP54-204ENST00000506098 RAB3GAP2Q9H2M9 1393 aa10.78□□□□□ -0.68
NUP54-204ENST00000506098 YEATS2Q9ULM3 1422 aa10.78□□□□□ -0.68
NUP54-204ENST00000506098 AGLP35573 1532 aa10.78□□□□□ -0.68
NUP54-204ENST00000506098 IQGAP3Q86VI3 1631 aa10.77□□□□□ -0.68
NUP54-204ENST00000506098 CEP152O94986 1710 aa10.77□□□□□ -0.69
NUP54-204ENST00000506098 KDM5DQ9BY66 1539 aa10.77□□□□□ -0.69
NUP54-204ENST00000506098 MROH1Q8NDA8 1641 aa10.76□□□□□ -0.69
NUP54-204ENST00000506098 ZC3H13Q5T200 1668 aaKnown RBP10.76□□□□□ -0.69
NUP54-204ENST00000506098 VWDEQ8N2E2 1590 aa10.75□□□□□ -0.69
NUP54-204ENST00000506098 PRDM15P57071 1507 aaPredicted RBP10.74□□□□□ -0.69
NUP54-204ENST00000506098 MYT1LQ9UL68 1186 aa10.74□□□□□ -0.69
NUP54-204ENST00000506098 TET3O43151 1660 aa10.73□□□□□ -0.69
NUP54-204ENST00000506098 FAM135AQ9P2D6 1515 aa10.72□□□□□ -0.69
NUP54-204ENST00000506098 E9PCH4 1651 aa10.72□□□□□ -0.69
NUP54-204ENST00000506098 MROH2AA6NES4 1674 aa10.71□□□□□ -0.69
NUP54-204ENST00000506098 FER1L4A9Z1Z3 1794 aa10.71□□□□□ -0.69
NUP54-204ENST00000506098 CLTCQ00610 1675 aaKnown RBP10.7□□□□□ -0.7
NUP54-204ENST00000506098 CAMSAP1Q5T5Y3 1602 aa10.7□□□□□ -0.7
NUP54-204ENST00000506098 PZPP20742 1482 aa10.7□□□□□ -0.7
NUP54-204ENST00000506098 SPHKAPQ2M3C7 1700 aa10.7□□□□□ -0.7
NUP54-204ENST00000506098 LMTK2Q8IWU2 1503 aa10.69□□□□□ -0.7
NUP54-204ENST00000506098 KIF3BO15066 747 aa10.68□□□□□ -0.7
NUP54-204ENST00000506098 DHX57Q6P158 1386 aaKnown RBP10.67□□□□□ -0.7
NUP54-204ENST00000506098 ADAMTSL3P82987 1691 aa10.66□□□□□ -0.7
NUP54-204ENST00000506098 NUP155O75694 1391 aa10.66□□□□□ -0.7
NUP54-204ENST00000506098 PPP6R1Q9UPN7 881 aa10.66□□□□□ -0.7
NUP54-204ENST00000506098 ABCC3O15438 1527 aa10.66□□□□□ -0.7
NUP54-204ENST00000506098 SETD1BQ9UPS6 1966 aaKnown RBP10.66□□□□□ -0.7
NUP54-204ENST00000506098 KANK1Q14678 1352 aa10.65□□□□□ -0.7
NUP54-204ENST00000506098 EFCAB6Q5THR3 1501 aa10.65□□□□□ -0.7
NUP54-204ENST00000506098 TRIM52Q96A61 297 aa10.65□□□□□ -0.7
NUP54-204ENST00000506098 PREX1Q8TCU6 1659 aa10.65□□□□□ -0.7
NUP54-204ENST00000506098 KIF1BO60333 1816 aa10.65□□□□□ -0.71
NUP54-204ENST00000506098 C3P01024 1663 aa10.64□□□□□ -0.71
NUP54-204ENST00000506098 MPHOSPH9Q99550 1183 aa10.64□□□□□ -0.71
NUP54-204ENST00000506098 RPRD2Q5VT52 1461 aaKnown RBP10.62□□□□□ -0.71
NUP54-204ENST00000506098 CLSPNQ9HAW4 1339 aa10.62□□□□□ -0.71
NUP54-204ENST00000506098 ARHGAP31Q2M1Z3 1444 aa10.62□□□□□ -0.71
NUP54-204ENST00000506098 GGT6Q6P531 493 aa10.62□□□□□ -0.71
NUP54-204ENST00000506098 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.62□□□□□ -0.71
NUP54-204ENST00000506098 SLC4A1APQ9BWU0 796 aaKnown RBP10.62□□□□□ -0.71
NUP54-204ENST00000506098 MYO5BQ9ULV0 1848 aa10.62□□□□□ -0.71
NUP54-204ENST00000506098 RIMS1Q86UR5 1692 aaKnown RBP10.62□□□□□ -0.71
NUP54-204ENST00000506098 FOXD1Q16676 465 aa10.61□□□□□ -0.71
NUP54-204ENST00000506098 MADDQ8WXG6 1647 aa10.61□□□□□ -0.71
NUP54-204ENST00000506098 WASHC2CQ9Y4E1 1318 aa10.59□□□□□ -0.71
NUP54-204ENST00000506098 CNTLNQ9NXG0 1405 aa10.59□□□□□ -0.71
NUP54-204ENST00000506098 PIK3C2BO00750 1634 aa10.59□□□□□ -0.71
NUP54-204ENST00000506098 PKD2Q13563 968 aa10.59□□□□□ -0.71
NUP54-204ENST00000506098 ARID4BQ4LE39 1312 aaPredicted RBP10.58□□□□□ -0.71
NUP54-204ENST00000506098 PTPRTO14522 1441 aa10.58□□□□□ -0.72
NUP54-204ENST00000506098 TRPM2O94759 1503 aa10.58□□□□□ -0.72
NUP54-204ENST00000506098 ANKRD30BQ9BXX2 1392 aa10.58□□□□□ -0.72
NUP54-204ENST00000506098 NPATQ14207 1427 aa10.58□□□□□ -0.72
NUP54-204ENST00000506098 KDM5AP29375 1690 aaKnown RBP10.57□□□□□ -0.72
NUP54-204ENST00000506098 CCER1Q8TC90 406 aaPredicted RBP10.57□□□□□ -0.72
NUP54-204ENST00000506098 CLTCL1P53675 1640 aa10.57□□□□□ -0.72
NUP54-204ENST00000506098 SYNMO15061 1565 aa10.56□□□□□ -0.72
NUP54-204ENST00000506098 SPATA31D1Q6ZQQ2 1576 aa10.56□□□□□ -0.72
NUP54-204ENST00000506098 PLA2R1Q13018 1463 aa10.56□□□□□ -0.72
NUP54-204ENST00000506098 NOS1P29475 1434 aa10.56□□□□□ -0.72
NUP54-204ENST00000506098 NEURL4Q96JN8 1562 aa10.56□□□□□ -0.72
NUP54-204ENST00000506098 IFT172Q9UG01 1749 aa10.55□□□□□ -0.72
NUP54-204ENST00000506098 MLECQ14165 292 aa10.55□□□□□ -0.72
NUP54-204ENST00000506098 ZMYM3Q14202 1370 aa10.54□□□□□ -0.72
NUP54-204ENST00000506098 ERVK-7P63135 1459 aa10.54□□□□□ -0.72
NUP54-204ENST00000506098 PPLO60437 1756 aa10.53□□□□□ -0.72
NUP54-204ENST00000506098 ESF1Q9H501 851 aaKnown RBP10.52□□□□□ -0.73
NUP54-204ENST00000506098 UBR1Q8IWV7 1749 aa10.52□□□□□ -0.73
NUP54-204ENST00000506098 TMEM131LA2VDJ0 1609 aa10.51□□□□□ -0.73
NUP54-204ENST00000506098 ZNF142P52746 1687 aaPredicted RBP10.51□□□□□ -0.73
NUP54-204ENST00000506098 UGGT1Q9NYU2 1555 aa10.5□□□□□ -0.73
NUP54-204ENST00000506098 MYO3AQ8NEV4 1616 aa10.5□□□□□ -0.73
NUP54-204ENST00000506098 CCDC144AA2RUR9 1427 aa10.5□□□□□ -0.73
NUP54-204ENST00000506098 SIN3AQ96ST3 1273 aa10.49□□□□□ -0.73
NUP54-204ENST00000506098 ADGRB3O60242 1522 aa10.48□□□□□ -0.73
NUP54-204ENST00000506098 TIMELESSQ9UNS1 1208 aa10.48□□□□□ -0.73
NUP54-204ENST00000506098 PTPRMP28827 1452 aa10.48□□□□□ -0.73
NUP54-204ENST00000506098 FBXO31Q5XUX0 539 aaPredicted RBP10.47□□□□□ -0.73
NUP54-204ENST00000506098 SLC52A1Q9NWF4 448 aa10.47□□□□□ -0.73
NUP54-204ENST00000506098 SPATA31E1Q6ZUB1 1445 aa10.47□□□□□ -0.73
NUP54-204ENST00000506098 NLRP1Q9C000 1473 aa10.46□□□□□ -0.74
NUP54-204ENST00000506098 KIAA1210Q9ULL0 1709 aa10.45□□□□□ -0.74
NUP54-204ENST00000506098 TNRQ92752 1358 aa10.45□□□□□ -0.74
NUP54-204ENST00000506098 ZEB1P37275 1124 aaPredicted RBP10.45□□□□□ -0.74
NUP54-204ENST00000506098 KDM4FA0A1W2PPD8 638 aa10.44□□□□□ -0.74
NUP54-204ENST00000506098 CEBPAP49715 358 aaPredicted RBP10.44□□□□□ -0.74
NUP54-204ENST00000506098 NEUROD1Q13562 356 aa10.44□□□□□ -0.74
NUP54-204ENST00000506098 IDI1Q13907 227 aa10.44□□□□□ -0.74
NUP54-204ENST00000506098 CEP170BQ9Y4F5 1589 aaPredicted RBP10.43□□□□□ -0.74
NUP54-204ENST00000506098 POLR1AO95602 1720 aaPredicted RBP10.43□□□□□ -0.74
NUP54-204ENST00000506098 NEXMIFQ5QGS0 1516 aa10.43□□□□□ -0.74
NUP54-204ENST00000506098 TONSLQ96HA7 1378 aa10.42□□□□□ -0.74
NUP54-204ENST00000506098 TRPM1Q7Z4N2 1603 aa10.42□□□□□ -0.74
NUP54-204ENST00000506098 A2ML1A8K2U0 1454 aa10.42□□□□□ -0.74
NUP54-204ENST00000506098 L3MBTL2Q969R5 705 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms