RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.84■□□□□ 0.451e-6■■□□□ 13.6
CUX1-210ENST00000497815 BCORL1Q5H9F3 1711 aa17.84■□□□□ 0.45
CUX1-210ENST00000497815 SETD5Q9C0A6 1442 aa17.81■□□□□ 0.44
CUX1-210ENST00000497815 RNF17Q9BXT8 1623 aaKnown RBP17.8■□□□□ 0.44
CUX1-210ENST00000497815 ESF1Q9H501 851 aaKnown RBP17.8■□□□□ 0.44
CUX1-210ENST00000497815 PCGF6Q9BYE7 350 aa17.79■□□□□ 0.44
CUX1-210ENST00000497815 MROH1Q8NDA8 1641 aa17.78■□□□□ 0.44
CUX1-210ENST00000497815 MADDQ8WXG6 1647 aa17.78■□□□□ 0.44
CUX1-210ENST00000497815 ADAMTSL3P82987 1691 aa17.77■□□□□ 0.44
CUX1-210ENST00000497815 DEPDC5O75140 1603 aa17.77■□□□□ 0.44
CUX1-210ENST00000497815 KDM4FA0A1W2PPD8 638 aa17.77■□□□□ 0.44
CUX1-210ENST00000497815 KANK1Q14678 1352 aa17.77■□□□□ 0.43
CUX1-210ENST00000497815 RAB3GAP2Q9H2M9 1393 aa17.77■□□□□ 0.43
CUX1-210ENST00000497815 WASHC2CQ9Y4E1 1318 aa17.76■□□□□ 0.43
CUX1-210ENST00000497815 PLPPR3Q6T4P5 718 aa17.76■□□□□ 0.43
CUX1-210ENST00000497815 TRIM52Q96A61 297 aa17.76■□□□□ 0.43
CUX1-210ENST00000497815 PRDM15P57071 1507 aaPredicted RBP17.76■□□□□ 0.43
CUX1-210ENST00000497815 FER1L4A9Z1Z3 1794 aa17.76■□□□□ 0.43
CUX1-210ENST00000497815 UNC13BO14795 1591 aa17.75■□□□□ 0.43
CUX1-210ENST00000497815 KDM5DQ9BY66 1539 aa17.74■□□□□ 0.43
CUX1-210ENST00000497815 NUP155O75694 1391 aa17.74■□□□□ 0.43
CUX1-210ENST00000497815 CLTCQ00610 1675 aaKnown RBP17.74■□□□□ 0.43
CUX1-210ENST00000497815 RIMS1Q86UR5 1692 aaKnown RBP17.74■□□□□ 0.43
CUX1-210ENST00000497815 PPP6R1Q9UPN7 881 aa17.73■□□□□ 0.43
CUX1-210ENST00000497815 ABCC3O15438 1527 aa17.72■□□□□ 0.43
CUX1-210ENST00000497815 CEP152O94986 1710 aa17.71■□□□□ 0.43
CUX1-210ENST00000497815 CNTLNQ9NXG0 1405 aa17.71■□□□□ 0.43
CUX1-210ENST00000497815 VWDEQ8N2E2 1590 aa17.7■□□□□ 0.42
CUX1-210ENST00000497815 ZC3H13Q5T200 1668 aaKnown RBP17.69■□□□□ 0.42
CUX1-210ENST00000497815 CEBPAP49715 358 aaPredicted RBP17.69■□□□□ 0.42
CUX1-210ENST00000497815 FAM135AQ9P2D6 1515 aa17.68■□□□□ 0.42
CUX1-210ENST00000497815 IQGAP3Q86VI3 1631 aa17.68■□□□□ 0.42
CUX1-210ENST00000497815 PTPRMP28827 1452 aa17.68■□□□□ 0.42
CUX1-210ENST00000497815 ZMYM3Q14202 1370 aa17.67■□□□□ 0.42
CUX1-210ENST00000497815 CAMSAP1Q5T5Y3 1602 aa17.67■□□□□ 0.42
CUX1-210ENST00000497815 MROH2AA6NES4 1674 aa17.65■□□□□ 0.42
CUX1-210ENST00000497815 LMTK2Q8IWU2 1503 aa17.65■□□□□ 0.42
CUX1-210ENST00000497815 PZPP20742 1482 aa17.64■□□□□ 0.41
CUX1-210ENST00000497815 MSH5O43196 834 aa17.64■□□□□ 0.41
CUX1-210ENST00000497815 SLC4A1APQ9BWU0 796 aaKnown RBP17.64■□□□□ 0.41
CUX1-210ENST00000497815 C3P01024 1663 aa17.64■□□□□ 0.41
CUX1-210ENST00000497815 EFCAB6Q5THR3 1501 aa17.63■□□□□ 0.41
CUX1-210ENST00000497815 HRCP23327 699 aa17.63■□□□□ 0.41
CUX1-210ENST00000497815 TET3O43151 1660 aa17.63■□□□□ 0.41
CUX1-210ENST00000497815 FBXO31Q5XUX0 539 aaPredicted RBP17.62■□□□□ 0.41
CUX1-210ENST00000497815 ACIN1Q9UKV3 1341 aaKnown RBP17.62■□□□□ 0.41
CUX1-210ENST00000497815 MPHOSPH9Q99550 1183 aa17.61■□□□□ 0.41
CUX1-210ENST00000497815 NPATQ14207 1427 aa17.61■□□□□ 0.41
CUX1-210ENST00000497815 PKD2Q13563 968 aa17.6■□□□□ 0.41
CUX1-210ENST00000497815 ARHGAP31Q2M1Z3 1444 aa17.59■□□□□ 0.41
CUX1-210ENST00000497815 E9PCH4 1651 aa17.58■□□□□ 0.41
CUX1-210ENST00000497815 ERVK-7P63135 1459 aa17.56■□□□□ 0.4
CUX1-210ENST00000497815 RPRD2Q5VT52 1461 aaKnown RBP17.56■□□□□ 0.4
CUX1-210ENST00000497815 PREX1Q8TCU6 1659 aa17.55■□□□□ 0.4
CUX1-210ENST00000497815 TNRQ92752 1358 aa17.54■□□□□ 0.4
CUX1-210ENST00000497815 SPATA31D1Q6ZQQ2 1576 aa17.53■□□□□ 0.4
CUX1-210ENST00000497815 CFAP65Q6ZU64 1925 aaKnown RBP17.52■□□□□ 0.4
CUX1-210ENST00000497815 NOS1P29475 1434 aa17.51■□□□□ 0.39
CUX1-210ENST00000497815 SYNMO15061 1565 aa17.5■□□□□ 0.39
CUX1-210ENST00000497815 SPHKAPQ2M3C7 1700 aa17.48■□□□□ 0.39
CUX1-210ENST00000497815 POTEDQ86YR6 584 aa17.48■□□□□ 0.39
CUX1-210ENST00000497815 DHX57Q6P158 1386 aaKnown RBP17.48■□□□□ 0.39
CUX1-210ENST00000497815 UGGT1Q9NYU2 1555 aa17.48■□□□□ 0.39
CUX1-210ENST00000497815 PTPRTO14522 1441 aa17.47■□□□□ 0.39
CUX1-210ENST00000497815 MYO3AQ8NEV4 1616 aa17.47■□□□□ 0.39
CUX1-210ENST00000497815 PLA2R1Q13018 1463 aa17.47■□□□□ 0.39
CUX1-210ENST00000497815 UHRF1BP1Q6BDS2 1440 aa17.47■□□□□ 0.39
CUX1-210ENST00000497815 IDI1Q13907 227 aa17.45■□□□□ 0.38
CUX1-210ENST00000497815 TRPM2O94759 1503 aa17.45■□□□□ 0.38
CUX1-210ENST00000497815 NLRP1Q9C000 1473 aa17.44■□□□□ 0.38
CUX1-210ENST00000497815 CHGAP10645 457 aaKnown RBP17.44■□□□□ 0.38
CUX1-210ENST00000497815 PIAS4Q8N2W9 510 aaPredicted RBP17.43■□□□□ 0.38
CUX1-210ENST00000497815 SLC52A1Q9NWF4 448 aa17.43■□□□□ 0.38
CUX1-210ENST00000497815 STAG3Q9UJ98 1225 aa17.43■□□□□ 0.38
CUX1-210ENST00000497815 CEP170BQ9Y4F5 1589 aaPredicted RBP17.43■□□□□ 0.38
CUX1-210ENST00000497815 CLTCL1P53675 1640 aa17.43■□□□□ 0.38
CUX1-210ENST00000497815 PIK3C2BO00750 1634 aa17.42■□□□□ 0.38
CUX1-210ENST00000497815 A2ML1A8K2U0 1454 aa17.42■□□□□ 0.38
CUX1-210ENST00000497815 ANKRD30BQ9BXX2 1392 aa17.41■□□□□ 0.38
CUX1-210ENST00000497815 CCDC144AA2RUR9 1427 aa17.41■□□□□ 0.38
CUX1-210ENST00000497815 LMTK3Q96Q04 1460 aa17.4■□□□□ 0.38
CUX1-210ENST00000497815 HSPA2P54652 639 aa17.39■□□□□ 0.37
CUX1-210ENST00000497815 ZNF142P52746 1687 aaPredicted RBP17.39■□□□□ 0.37
CUX1-210ENST00000497815 SETD1BQ9UPS6 1966 aaKnown RBP17.38■□□□□ 0.37
CUX1-210ENST00000497815 ADGRB3O60242 1522 aa17.37■□□□□ 0.37
CUX1-210ENST00000497815 CCER1Q8TC90 406 aaPredicted RBP17.37■□□□□ 0.37
CUX1-210ENST00000497815 UBR1Q8IWV7 1749 aa17.36■□□□□ 0.37
CUX1-210ENST00000497815 THEMISQ8N1K5 641 aaPredicted RBP17.35■□□□□ 0.37
CUX1-210ENST00000497815 SIN3AQ96ST3 1273 aa17.35■□□□□ 0.37
CUX1-210ENST00000497815 TMEM131LA2VDJ0 1609 aa17.35■□□□□ 0.37
CUX1-210ENST00000497815 ZNF326Q5BKZ1 582 aaKnown RBP17.34■□□□□ 0.37
CUX1-210ENST00000497815 NEUROD1Q13562 356 aa17.33■□□□□ 0.36
CUX1-210ENST00000497815 RGL3Q3MIN7 710 aa17.33■□□□□ 0.36
CUX1-210ENST00000497815 KIF1BO60333 1816 aa17.32■□□□□ 0.36
CUX1-210ENST00000497815 MYO5BQ9ULV0 1848 aa17.31■□□□□ 0.36
CUX1-210ENST00000497815 KDM5AP29375 1690 aaKnown RBP17.3■□□□□ 0.36
CUX1-210ENST00000497815 TMEM2Q9UHN6 1383 aa17.29■□□□□ 0.36
CUX1-210ENST00000497815 NUTM2DQ5VT03 806 aaPredicted RBP17.29■□□□□ 0.36
CUX1-210ENST00000497815 SPATA31E1Q6ZUB1 1445 aa17.29■□□□□ 0.36
CUX1-210ENST00000497815 RIMS2Q9UQ26 1411 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms