RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 TYW1BQ6NUM6 668 aa12.83□□□□□ -0.36
VIM-207ENST00000495528 EPAS1Q99814 870 aa12.83□□□□□ -0.36
VIM-207ENST00000495528 NUTM2FA1L443 756 aa12.82□□□□□ -0.36
VIM-207ENST00000495528 ERBB3P21860 1342 aa12.82□□□□□ -0.36
VIM-207ENST00000495528 MAP3K7O43318 606 aa12.81□□□□□ -0.36
VIM-207ENST00000495528 ZDHHC16Q969W1 377 aa12.81□□□□□ -0.36
VIM-207ENST00000495528 GPIHBP1Q8IV16 184 aa12.8□□□□□ -0.36
VIM-207ENST00000495528 EN1Q05925 392 aaPredicted RBP12.79□□□□□ -0.36
VIM-207ENST00000495528 PPP4R3BQ5MIZ7 849 aa12.79□□□□□ -0.36
VIM-207ENST00000495528 FAM205CA6NFA0 338 aa12.78□□□□□ -0.36
VIM-207ENST00000495528 VARS2Q5ST30 1063 aaKnown RBP12.78□□□□□ -0.36
VIM-207ENST00000495528 FBXW7Q969H0 707 aa12.78□□□□□ -0.36
VIM-207ENST00000495528 ADAM33Q9BZ11 813 aa12.78□□□□□ -0.36
VIM-207ENST00000495528 PSDA5PKW4 1024 aaPredicted RBP12.77□□□□□ -0.37
VIM-207ENST00000495528 TSR1Q2NL82 804 aaKnown RBP12.77□□□□□ -0.37
VIM-207ENST00000495528 CDHR5Q9HBB8 845 aa12.76□□□□□ -0.37
VIM-207ENST00000495528 ZC3H15Q8WU90 426 aaKnown RBP12.75□□□□□ -0.37
VIM-207ENST00000495528 C6orf132Q5T0Z8 1188 aa12.72□□□□□ -0.37
VIM-207ENST00000495528 HS3ST6Q96QI5 342 aa12.69□□□□□ -0.38
VIM-207ENST00000495528 POTEB3A0JP26 581 aa12.68□□□□□ -0.38
VIM-207ENST00000495528 POTEBQ6S5H4 581 aa12.68□□□□□ -0.38
VIM-207ENST00000495528 BCL2L12Q9HB09 334 aa12.68□□□□□ -0.38
VIM-207ENST00000495528 PCDH10Q9P2E7 1040 aa12.68□□□□□ -0.38
VIM-207ENST00000495528 GPR37O15354 613 aa12.67□□□□□ -0.38
VIM-207ENST00000495528 FCHSD2O94868 740 aa12.67□□□□□ -0.38
VIM-207ENST00000495528 PTPREP23469 700 aa12.67□□□□□ -0.38
VIM-207ENST00000495528 PTGDRQ13258 359 aa12.67□□□□□ -0.38
VIM-207ENST00000495528 KCNK17Q96T54 332 aa12.67□□□□□ -0.38
VIM-207ENST00000495528 CDAN1Q8IWY9 1227 aa12.66□□□□□ -0.38
VIM-207ENST00000495528 NPDC1Q9NQX5 325 aaPredicted RBP12.65□□□□□ -0.38
VIM-207ENST00000495528 AXIN2Q9Y2T1 843 aa12.65□□□□□ -0.38
VIM-207ENST00000495528 ZMYND10O75800 440 aa12.64□□□□□ -0.39
VIM-207ENST00000495528 COL9A1P20849 921 aa12.64□□□□□ -0.39
VIM-207ENST00000495528 PSEN2P49810 448 aa12.63□□□□□ -0.39
VIM-207ENST00000495528 GNPATO15228 680 aa12.62□□□□□ -0.39
VIM-207ENST00000495528 FECHP22830 423 aa12.62□□□□□ -0.39
VIM-207ENST00000495528 HIC1Q14526 733 aa12.62□□□□□ -0.39
VIM-207ENST00000495528 ZNF687Q8N1G0 1237 aa12.62□□□□□ -0.39
VIM-207ENST00000495528 KRI1Q8N9T8 703 aaKnown RBP12.62□□□□□ -0.39
VIM-207ENST00000495528 KCNH8Q96L42 1107 aa12.62□□□□□ -0.39
VIM-207ENST00000495528 POTEEQ6S8J3 1075 aa12.61□□□□□ -0.39
VIM-207ENST00000495528 BARGINQ6ZT62 677 aa12.6□□□□□ -0.39
VIM-207ENST00000495528 ARHGAP33O14559 1287 aa12.59□□□□□ -0.39
VIM-207ENST00000495528 SLC24A3Q9HC58 644 aa12.59□□□□□ -0.39
VIM-207ENST00000495528 PPP1R3GB7ZBB8 358 aa12.58□□□□□ -0.4
VIM-207ENST00000495528 CERKQ8TCT0 537 aa12.58□□□□□ -0.4
VIM-207ENST00000495528 PADI6Q6TGC4 694 aa12.57□□□□□ -0.4
VIM-207ENST00000495528 DMRTA1Q5VZB9 504 aa12.56□□□□□ -0.4
VIM-207ENST00000495528 CDCA7LQ96GN5 454 aa12.56□□□□□ -0.4
VIM-207ENST00000495528 PRSS12P56730 875 aa12.55□□□□□ -0.4
VIM-207ENST00000495528 PROX2Q3B8N5 592 aa12.55□□□□□ -0.4
VIM-207ENST00000495528 PBX2P40425 430 aa12.53□□□□□ -0.4
VIM-207ENST00000495528 FAM161AQ3B820 660 aa12.53□□□□□ -0.4
VIM-207ENST00000495528 MAP2K5Q13163 448 aa12.52□□□□□ -0.41
VIM-207ENST00000495528 TSKSQ9UJT2 592 aa12.51□□□□□ -0.41
VIM-207ENST00000495528 ZBED2Q9BTP6 218 aa12.5□□□□□ -0.41
VIM-207ENST00000495528 FAM198AQ9UFP1 575 aa12.5□□□□□ -0.41
VIM-207ENST00000495528 NCAPD3P42695 1498 aa12.5□□□□□ -0.41
VIM-207ENST00000495528 MINK1Q8N4C8 1332 aaPredicted RBP12.49□□□□□ -0.41
VIM-207ENST00000495528 TRIM6-TRIM34B2RNG4 842 aa12.49□□□□□ -0.41
VIM-207ENST00000495528 IRF6O14896 467 aa12.49□□□□□ -0.41
VIM-207ENST00000495528 CCDC102AQ96A19 550 aa12.49□□□□□ -0.41
VIM-207ENST00000495528 AK7Q96M32 723 aa12.47□□□□□ -0.41
VIM-207ENST00000495528 RBM27Q9P2N5 1060 aaKnown RBP12.47□□□□□ -0.41
VIM-207ENST00000495528 ANKRD13DQ6ZTN6 518 aa12.46□□□□□ -0.41
VIM-207ENST00000495528 TTC13Q8NBP0 860 aa12.46□□□□□ -0.41
VIM-207ENST00000495528 KIAA1468Q9P260 1216 aa12.46□□□□□ -0.41
VIM-207ENST00000495528 LSM11P83369 360 aaKnown RBP eCLIP12.45□□□□□ -0.42
VIM-207ENST00000495528 PACS2Q86VP3 889 aa12.45□□□□□ -0.42
VIM-207ENST00000495528 C3orf80F5H4A9 247 aa12.44□□□□□ -0.42
VIM-207ENST00000495528 SMAPO00193 183 aa12.44□□□□□ -0.42
VIM-207ENST00000495528 VPS9D1Q9Y2B5 631 aa12.44□□□□□ -0.42
VIM-207ENST00000495528 ADGRG1Q9Y653 693 aa12.44□□□□□ -0.42
VIM-207ENST00000495528 CUX2O14529 1486 aa12.44□□□□□ -0.42
VIM-207ENST00000495528 ERCC6Q03468 1493 aa12.44□□□□□ -0.42
VIM-207ENST00000495528 ATAD2BQ9ULI0 1458 aa12.44□□□□□ -0.42
VIM-207ENST00000495528 NUDT18Q6ZVK8 323 aa12.43□□□□□ -0.42
VIM-207ENST00000495528 PNMA3Q9UL41 463 aa12.43□□□□□ -0.42
VIM-207ENST00000495528 TRIM66O15016 1216 aa12.41□□□□□ -0.42
VIM-207ENST00000495528 TATDN2Q93075 761 aa12.41□□□□□ -0.42
VIM-207ENST00000495528 NBPF26B4DH59 902 aa12.4□□□□□ -0.42
VIM-207ENST00000495528 ADGRD1Q6QNK2 874 aa12.4□□□□□ -0.42
VIM-207ENST00000495528 NLRP7Q8WX94 980 aa12.4□□□□□ -0.42
VIM-207ENST00000495528 SLC4A5Q9BY07 1137 aa12.4□□□□□ -0.42
VIM-207ENST00000495528 KRTAP3-3Q9BYR6 98 aa12.4□□□□□ -0.42
VIM-207ENST00000495528 KRTAP3-2Q9BYR7 98 aa12.4□□□□□ -0.42
VIM-207ENST00000495528 SEPT9Q9UHD8 586 aaPredicted RBP12.4□□□□□ -0.42
VIM-207ENST00000495528 ONECUT3O60422 494 aaPredicted RBP12.39□□□□□ -0.43
VIM-207ENST00000495528 OATP04181 439 aa12.39□□□□□ -0.43
VIM-207ENST00000495528 RBM46Q8TBY0 533 aaKnown RBP12.39□□□□□ -0.43
VIM-207ENST00000495528 RABGEF1Q9UJ41 708 aa12.39□□□□□ -0.43
VIM-207ENST00000495528 METTL3Q86U44 580 aaKnown RBP12.38□□□□□ -0.43
VIM-207ENST00000495528 PHOX2BQ99453 314 aa12.38□□□□□ -0.43
VIM-207ENST00000495528 TK2O00142 265 aa12.37□□□□□ -0.43
VIM-207ENST00000495528 PXYLP1Q8TE99 480 aa12.37□□□□□ -0.43
VIM-207ENST00000495528 SPNS2Q8IVW8 549 aa12.35□□□□□ -0.43
VIM-207ENST00000495528 EYA1Q99502 592 aa12.35□□□□□ -0.43
VIM-207ENST00000495528 NESP48681 1621 aa12.35□□□□□ -0.43
VIM-207ENST00000495528 PDE4DQ08499 809 aa12.34□□□□□ -0.43
VIM-207ENST00000495528 NEUROD2Q15784 382 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms