RNA–Protein interactions for RNA: ENST00000493864.1

TRA2B-216, Transcript of transformer 2 beta homolog, humanhuman

TSL 2

Gene TRA2B, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-216ENST00000493864 SNPHO15079 494 aa11.02□□□□□ -0.65
TRA2B-216ENST00000493864 ARSIQ5FYB1 569 aa11.02□□□□□ -0.65
TRA2B-216ENST00000493864 DDX12PQ92771 950 aa11.01□□□□□ -0.65
TRA2B-216ENST00000493864 KHSRPQ92945 711 aaKnown RBP eCLIP11.01□□□□□ -0.65
TRA2B-216ENST00000493864 PRKCSHP14314 528 aaPredicted RBP11□□□□□ -0.65
TRA2B-216ENST00000493864 ZSWIM6Q9HCJ5 1215 aa10.99□□□□□ -0.65
TRA2B-216ENST00000493864 NUDT7P0C024 238 aa10.98□□□□□ -0.65
TRA2B-216ENST00000493864 ANO8Q9HCE9 1232 aaPredicted RBP10.98□□□□□ -0.65
TRA2B-216ENST00000493864 WRNQ14191 1432 aaPredicted RBP eCLIP10.98□□□□□ -0.65
TRA2B-216ENST00000493864 PTGER2P43116 358 aa10.97□□□□□ -0.65
TRA2B-216ENST00000493864 GPR153Q6NV75 609 aa10.97□□□□□ -0.65
TRA2B-216ENST00000493864 RBM26Q5T8P6 1007 aaKnown RBP10.96□□□□□ -0.65
TRA2B-216ENST00000493864 CUX1P39880 1505 aa10.94□□□□□ -0.66
TRA2B-216ENST00000493864 KDM4FA0A1W2PPD8 638 aa10.94□□□□□ -0.66
TRA2B-216ENST00000493864 SYNJ1O43426 1573 aa10.94□□□□□ -0.66
TRA2B-216ENST00000493864 TOPBP1Q92547 1522 aa10.93□□□□□ -0.66
TRA2B-216ENST00000493864 OSBPP22059 807 aa10.92□□□□□ -0.66
TRA2B-216ENST00000493864 DNMBPQ6XZF7 1577 aa10.91□□□□□ -0.66
TRA2B-216ENST00000493864 HOXB1P14653 301 aaPredicted RBP10.9□□□□□ -0.66
TRA2B-216ENST00000493864 TOP2BQ02880 1626 aa10.9□□□□□ -0.66
TRA2B-216ENST00000493864 PHF14O94880 888 aa10.89□□□□□ -0.67
TRA2B-216ENST00000493864 GPIHBP1Q8IV16 184 aa10.89□□□□□ -0.67
TRA2B-216ENST00000493864 PCDHGA10Q9Y5H3 936 aa10.89□□□□□ -0.67
TRA2B-216ENST00000493864 PRIM1P49642 420 aaKnown RBP10.88□□□□□ -0.67
TRA2B-216ENST00000493864 ZNF454Q8N9F8 522 aa10.88□□□□□ -0.67
TRA2B-216ENST00000493864 JPH4Q96JJ6 628 aa10.88□□□□□ -0.67
TRA2B-216ENST00000493864 LHX6Q9UPM6 363 aa10.88□□□□□ -0.67
TRA2B-216ENST00000493864 BIVM-ERCC5R4GMW8 1640 aa10.87□□□□□ -0.67
TRA2B-216ENST00000493864 NUTM2FA1L443 756 aa10.87□□□□□ -0.67
TRA2B-216ENST00000493864 ZC3H15Q8WU90 426 aaKnown RBP10.87□□□□□ -0.67
TRA2B-216ENST00000493864 RBM33Q96EV2 1170 aaKnown RBP10.87□□□□□ -0.67
TRA2B-216ENST00000493864 EPAS1Q99814 870 aa10.87□□□□□ -0.67
TRA2B-216ENST00000493864 ZNF608Q9ULD9 1512 aaPredicted RBP10.86□□□□□ -0.67
TRA2B-216ENST00000493864 FOSBP53539 338 aa10.86□□□□□ -0.67
TRA2B-216ENST00000493864 TYW1BQ6NUM6 668 aa10.86□□□□□ -0.67
TRA2B-216ENST00000493864 FGD5Q6ZNL6 1462 aa10.85□□□□□ -0.67
TRA2B-216ENST00000493864 TARBP1Q13395 1621 aaKnown RBP10.84□□□□□ -0.67
TRA2B-216ENST00000493864 MAP3K7O43318 606 aa10.84□□□□□ -0.67
TRA2B-216ENST00000493864 ST18O60284 1047 aa10.84□□□□□ -0.67
TRA2B-216ENST00000493864 EN1Q05925 392 aaPredicted RBP10.84□□□□□ -0.67
TRA2B-216ENST00000493864 FAM163AQ96GL9 167 aaPredicted RBP10.84□□□□□ -0.67
TRA2B-216ENST00000493864 EIF4G3O43432 1585 aaKnown RBP10.84□□□□□ -0.67
TRA2B-216ENST00000493864 SOGA1O94964 1423 aa10.84□□□□□ -0.67
TRA2B-216ENST00000493864 POLA1P09884 1462 aaPredicted RBP10.83□□□□□ -0.68
TRA2B-216ENST00000493864 IFT140Q96RY7 1462 aa10.83□□□□□ -0.68
TRA2B-216ENST00000493864 FBXW7Q969H0 707 aa10.83□□□□□ -0.68
TRA2B-216ENST00000493864 RAD54L2Q9Y4B4 1467 aa10.82□□□□□ -0.68
TRA2B-216ENST00000493864 FAM9AQ8IZU1 332 aaPredicted RBP10.82□□□□□ -0.68
TRA2B-216ENST00000493864 ZDHHC16Q969W1 377 aa10.82□□□□□ -0.68
TRA2B-216ENST00000493864 PSDA5PKW4 1024 aaPredicted RBP10.8□□□□□ -0.68
TRA2B-216ENST00000493864 PPP4R3BQ5MIZ7 849 aa10.8□□□□□ -0.68
TRA2B-216ENST00000493864 RUSC2Q8N2Y8 1516 aa10.79□□□□□ -0.68
TRA2B-216ENST00000493864 TSR1Q2NL82 804 aaKnown RBP10.79□□□□□ -0.68
TRA2B-216ENST00000493864 MARVELD3Q96A59 401 aa10.79□□□□□ -0.68
TRA2B-216ENST00000493864 ADAM33Q9BZ11 813 aa10.79□□□□□ -0.68
TRA2B-216ENST00000493864 CDHR5Q9HBB8 845 aa10.79□□□□□ -0.68
TRA2B-216ENST00000493864 WDR97A6NE52 1622 aa10.78□□□□□ -0.68
TRA2B-216ENST00000493864 ZMYND10O75800 440 aa10.78□□□□□ -0.68
TRA2B-216ENST00000493864 ERBB3P21860 1342 aa10.78□□□□□ -0.68
TRA2B-216ENST00000493864 CHD1O14646 1710 aa10.78□□□□□ -0.68
TRA2B-216ENST00000493864 AQRO60306 1485 aaKnown RBP eCLIP10.77□□□□□ -0.692e-10■■■■□ 25.4
TRA2B-216ENST00000493864 GPR37O15354 613 aa10.77□□□□□ -0.69
TRA2B-216ENST00000493864 EMP3P54852 163 aa10.77□□□□□ -0.69
TRA2B-216ENST00000493864 FCHSD2O94868 740 aa10.76□□□□□ -0.69
TRA2B-216ENST00000493864 C6orf132Q5T0Z8 1188 aa10.76□□□□□ -0.69
TRA2B-216ENST00000493864 TDRD9Q8NDG6 1382 aaKnown RBP10.76□□□□□ -0.69
TRA2B-216ENST00000493864 PTGDRQ13258 359 aa10.75□□□□□ -0.69
TRA2B-216ENST00000493864 ABCA10Q8WWZ4 1543 aa10.74□□□□□ -0.69
TRA2B-216ENST00000493864 VARS2Q5ST30 1063 aaKnown RBP10.74□□□□□ -0.69
TRA2B-216ENST00000493864 BARGINQ6ZT62 677 aa10.74□□□□□ -0.69
TRA2B-216ENST00000493864 PBRM1Q86U86 1689 aa10.73□□□□□ -0.69
TRA2B-216ENST00000493864 KRI1Q8N9T8 703 aaKnown RBP10.73□□□□□ -0.69
TRA2B-216ENST00000493864 KIF27Q86VH2 1401 aa10.73□□□□□ -0.69
TRA2B-216ENST00000493864 FAM205CA6NFA0 338 aa10.72□□□□□ -0.69
TRA2B-216ENST00000493864 GNPATO15228 680 aa10.72□□□□□ -0.69
TRA2B-216ENST00000493864 HIC1Q14526 733 aa10.72□□□□□ -0.69
TRA2B-216ENST00000493864 BCL2L12Q9HB09 334 aa10.72□□□□□ -0.69
TRA2B-216ENST00000493864 SLC24A3Q9HC58 644 aa10.72□□□□□ -0.69
TRA2B-216ENST00000493864 NPDC1Q9NQX5 325 aaPredicted RBP10.72□□□□□ -0.69
TRA2B-216ENST00000493864 IGF1RP08069 1367 aa10.7□□□□□ -0.7
TRA2B-216ENST00000493864 FECHP22830 423 aa10.7□□□□□ -0.7
TRA2B-216ENST00000493864 PTPREP23469 700 aa10.7□□□□□ -0.7
TRA2B-216ENST00000493864 LCE2DQ5TA82 110 aaPredicted RBP10.7□□□□□ -0.7
TRA2B-216ENST00000493864 EEA1Q15075 1411 aa10.69□□□□□ -0.7
TRA2B-216ENST00000493864 GAPVD1Q14C86 1478 aa10.68□□□□□ -0.7
TRA2B-216ENST00000493864 LOC105371045A0A1W2PR82 267 aa10.68□□□□□ -0.7
TRA2B-216ENST00000493864 CERKQ8TCT0 537 aa10.68□□□□□ -0.7
TRA2B-216ENST00000493864 KCNK17Q96T54 332 aa10.68□□□□□ -0.7
TRA2B-216ENST00000493864 ABCA5Q8WWZ7 1642 aa10.68□□□□□ -0.7
TRA2B-216ENST00000493864 COL9A1P20849 921 aa10.67□□□□□ -0.7
TRA2B-216ENST00000493864 SNAPC4Q5SXM2 1469 aa10.67□□□□□ -0.7
TRA2B-216ENST00000493864 MAP2K5Q13163 448 aa10.65□□□□□ -0.7
TRA2B-216ENST00000493864 KCNH8Q96L42 1107 aa10.65□□□□□ -0.7
TRA2B-216ENST00000493864 HS3ST6Q96QI5 342 aa10.65□□□□□ -0.7
TRA2B-216ENST00000493864 MINK1Q8N4C8 1332 aaPredicted RBP10.64□□□□□ -0.71
TRA2B-216ENST00000493864 PPP1R3GB7ZBB8 358 aa10.64□□□□□ -0.71
TRA2B-216ENST00000493864 PADI6Q6TGC4 694 aa10.64□□□□□ -0.71
TRA2B-216ENST00000493864 GRIN2BQ13224 1484 aa10.63□□□□□ -0.71
TRA2B-216ENST00000493864 POTEB3A0JP26 581 aa10.63□□□□□ -0.71
TRA2B-216ENST00000493864 PSEN2P49810 448 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms