RNA–Protein interactions for RNA: ENST00000490391.1

PDLIM1-203, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 458 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-203ENST00000490391 NUP153P49790 1475 aaKnown RBP12.54□□□□□ -0.4
PDLIM1-203ENST00000490391 MED1Q15648 1581 aaPredicted RBP12.54□□□□□ -0.4
PDLIM1-203ENST00000490391 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.53□□□□□ -0.4
PDLIM1-203ENST00000490391 SPDYE4A6NLX3 237 aa12.53□□□□□ -0.4
PDLIM1-203ENST00000490391 ATN1P54259 1190 aaPredicted RBP12.53□□□□□ -0.4
PDLIM1-203ENST00000490391 NCOA1Q15788 1441 aa12.53□□□□□ -0.4
PDLIM1-203ENST00000490391 C9orf84Q5VXU9 1444 aa12.53□□□□□ -0.4
PDLIM1-203ENST00000490391 ATP10AO60312 1499 aa12.53□□□□□ -0.4
PDLIM1-203ENST00000490391 SAMD9Q5K651 1589 aa12.52□□□□□ -0.41
PDLIM1-203ENST00000490391 P3H3Q8IVL6 736 aa12.51□□□□□ -0.41
PDLIM1-203ENST00000490391 PRXQ9BXM0 1461 aa12.51□□□□□ -0.41
PDLIM1-203ENST00000490391 C3P01024 1663 aa12.5□□□□□ -0.41
PDLIM1-203ENST00000490391 UBAP1LF5GYI3 381 aa12.49□□□□□ -0.41
PDLIM1-203ENST00000490391 SCAPERQ9BY12 1400 aa12.48□□□□□ -0.41
PDLIM1-203ENST00000490391 POTEFA5A3E0 1075 aa12.48□□□□□ -0.41
PDLIM1-203ENST00000490391 FAM9AQ8IZU1 332 aaPredicted RBP12.46□□□□□ -0.41
PDLIM1-203ENST00000490391 ZNF335Q9H4Z2 1342 aaPredicted RBP12.45□□□□□ -0.42
PDLIM1-203ENST00000490391 TRAPPC8Q9Y2L5 1435 aa12.45□□□□□ -0.42
PDLIM1-203ENST00000490391 TSPYL2Q9H2G4 693 aaPredicted RBP12.44□□□□□ -0.42
PDLIM1-203ENST00000490391 CCDC61Q9Y6R9 512 aa12.44□□□□□ -0.42
PDLIM1-203ENST00000490391 REREQ9P2R6 1566 aa12.43□□□□□ -0.42
PDLIM1-203ENST00000490391 PLEKHD1A6NEE1 506 aa12.43□□□□□ -0.42
PDLIM1-203ENST00000490391 HSPA1LP34931 641 aa12.43□□□□□ -0.42
PDLIM1-203ENST00000490391 CDAN1Q8IWY9 1227 aa12.43□□□□□ -0.42
PDLIM1-203ENST00000490391 CAMSAP1Q5T5Y3 1602 aa12.43□□□□□ -0.42
PDLIM1-203ENST00000490391 PLCH2O75038 1416 aa12.43□□□□□ -0.42
PDLIM1-203ENST00000490391 BMP2KQ9NSY1 1161 aaPredicted RBP12.42□□□□□ -0.42
PDLIM1-203ENST00000490391 KDM5CP41229 1560 aa12.42□□□□□ -0.42
PDLIM1-203ENST00000490391 DIP2CQ9Y2E4 1556 aa12.42□□□□□ -0.42
PDLIM1-203ENST00000490391 KIF12Q96FN5 646 aa12.41□□□□□ -0.42
PDLIM1-203ENST00000490391 AGLP35573 1532 aa12.39□□□□□ -0.43
PDLIM1-203ENST00000490391 ZNF518AQ6AHZ1 1483 aa12.39□□□□□ -0.43
PDLIM1-203ENST00000490391 ABCA6Q8N139 1617 aa12.38□□□□□ -0.43
PDLIM1-203ENST00000490391 NCKAP5LQ9HCH0 1330 aa12.37□□□□□ -0.43
PDLIM1-203ENST00000490391 TCOF1Q13428 1488 aaKnown RBP12.37□□□□□ -0.43
PDLIM1-203ENST00000490391 PLA2R1Q13018 1463 aa12.36□□□□□ -0.43
PDLIM1-203ENST00000490391 NPATQ14207 1427 aa12.36□□□□□ -0.43
PDLIM1-203ENST00000490391 SRCAPQ6ZRS2 3230 aa12.35□□□□□ -0.43
PDLIM1-203ENST00000490391 TIE1P35590 1138 aa12.35□□□□□ -0.43
PDLIM1-203ENST00000490391 TRPC6Q9Y210 931 aa12.35□□□□□ -0.43
PDLIM1-203ENST00000490391 MYO5CQ9NQX4 1742 aa12.34□□□□□ -0.43
PDLIM1-203ENST00000490391 CDK13Q14004 1512 aaKnown RBP12.34□□□□□ -0.43
PDLIM1-203ENST00000490391 AFAP1Q8N556 730 aa12.34□□□□□ -0.43
PDLIM1-203ENST00000490391 ZNF142P52746 1687 aaPredicted RBP12.34□□□□□ -0.43
PDLIM1-203ENST00000490391 CNTLNQ9NXG0 1405 aa12.34□□□□□ -0.43
PDLIM1-203ENST00000490391 MLH3Q9UHC1 1453 aa12.34□□□□□ -0.43
PDLIM1-203ENST00000490391 ALKQ9UM73 1620 aa12.33□□□□□ -0.43
PDLIM1-203ENST00000490391 EFCAB2Q5VUJ9 269 aa12.33□□□□□ -0.44
PDLIM1-203ENST00000490391 MROH2AA6NES4 1674 aa12.32□□□□□ -0.44
PDLIM1-203ENST00000490391 PIP4K2BP78356 416 aa12.32□□□□□ -0.44
PDLIM1-203ENST00000490391 PKD2Q13563 968 aa12.32□□□□□ -0.44
PDLIM1-203ENST00000490391 CSRNP3Q8WYN3 585 aa12.32□□□□□ -0.44
PDLIM1-203ENST00000490391 COLQQ9Y215 455 aaPredicted RBP12.32□□□□□ -0.44
PDLIM1-203ENST00000490391 MYO3AQ8NEV4 1616 aa12.31□□□□□ -0.44
PDLIM1-203ENST00000490391 CEP170BQ9Y4F5 1589 aaPredicted RBP12.3□□□□□ -0.44
PDLIM1-203ENST00000490391 MAP3K13O43283 966 aa12.29□□□□□ -0.44
PDLIM1-203ENST00000490391 SEC24BO95487 1268 aa12.29□□□□□ -0.44
PDLIM1-203ENST00000490391 ESF1Q9H501 851 aaKnown RBP12.29□□□□□ -0.44
PDLIM1-203ENST00000490391 RGS17Q9UGC6 210 aaPredicted RBP12.29□□□□□ -0.44
PDLIM1-203ENST00000490391 KIF14Q15058 1648 aa12.29□□□□□ -0.44
PDLIM1-203ENST00000490391 CPS1P31327 1500 aa12.28□□□□□ -0.44
PDLIM1-203ENST00000490391 TOM1O60784 492 aa12.28□□□□□ -0.44
PDLIM1-203ENST00000490391 SUPT6HQ7KZ85 1726 aaKnown RBP12.27□□□□□ -0.45
PDLIM1-203ENST00000490391 KIDINS220Q9ULH0 1771 aa12.27□□□□□ -0.45
PDLIM1-203ENST00000490391 ZMYM3Q14202 1370 aa12.27□□□□□ -0.45
PDLIM1-203ENST00000490391 TTLL13PA6NNM8 815 aa12.26□□□□□ -0.45
PDLIM1-203ENST00000490391 ARHGAP5Q13017 1502 aa12.26□□□□□ -0.45
PDLIM1-203ENST00000490391 PTPRKQ15262 1439 aa12.25□□□□□ -0.45
PDLIM1-203ENST00000490391 NEURL4Q96JN8 1562 aa12.25□□□□□ -0.45
PDLIM1-203ENST00000490391 ST18O60284 1047 aa12.24□□□□□ -0.45
PDLIM1-203ENST00000490391 SHANK2Q9UPX8 1470 aa12.24□□□□□ -0.45
PDLIM1-203ENST00000490391 CDC42BPBQ9Y5S2 1711 aa12.23□□□□□ -0.45
PDLIM1-203ENST00000490391 ABCC1P33527 1531 aa12.23□□□□□ -0.45
PDLIM1-203ENST00000490391 IER5LQ5T953 404 aa12.22□□□□□ -0.45
PDLIM1-203ENST00000490391 MYT1LQ9UL68 1186 aa12.22□□□□□ -0.45
PDLIM1-203ENST00000490391 CLTCQ00610 1675 aaKnown RBP12.22□□□□□ -0.45
PDLIM1-203ENST00000490391 ITSN2Q9NZM3 1697 aa12.22□□□□□ -0.45
PDLIM1-203ENST00000490391 VWDEQ8N2E2 1590 aa12.22□□□□□ -0.45
PDLIM1-203ENST00000490391 RANGAP1P46060 587 aaPredicted RBP12.21□□□□□ -0.45
PDLIM1-203ENST00000490391 DNMT1P26358 1616 aaKnown RBP12.21□□□□□ -0.46
PDLIM1-203ENST00000490391 POLR1AO95602 1720 aaPredicted RBP12.2□□□□□ -0.46
PDLIM1-203ENST00000490391 A2ML1A8K2U0 1454 aa12.2□□□□□ -0.46
PDLIM1-203ENST00000490391 TROQ12816 1431 aaPredicted RBP12.2□□□□□ -0.46
PDLIM1-203ENST00000490391 MMRN1Q13201 1228 aa12.19□□□□□ -0.46
PDLIM1-203ENST00000490391 SLAIN1Q8ND83 568 aa12.19□□□□□ -0.46
PDLIM1-203ENST00000490391 PREX2Q70Z35 1606 aa12.18□□□□□ -0.46
PDLIM1-203ENST00000490391 PLXNC1O60486 1568 aa12.18□□□□□ -0.46
PDLIM1-203ENST00000490391 TRIM35Q9UPQ4 493 aa12.17□□□□□ -0.46
PDLIM1-203ENST00000490391 SAMD9LQ8IVG5 1584 aa12.17□□□□□ -0.46
PDLIM1-203ENST00000490391 POTEAQ6S8J7 498 aa12.16□□□□□ -0.46
PDLIM1-203ENST00000490391 SPNS2Q8IVW8 549 aa12.16□□□□□ -0.46
PDLIM1-203ENST00000490391 PROM2Q8N271 834 aa12.16□□□□□ -0.46
PDLIM1-203ENST00000490391 RASEFQ8IZ41 740 aa12.15□□□□□ -0.46
PDLIM1-203ENST00000490391 STRCP1A6NGW2 1772 aa12.15□□□□□ -0.46
PDLIM1-203ENST00000490391 SETD1AO15047 1707 aaKnown RBP12.14□□□□□ -0.47
PDLIM1-203ENST00000490391 CDK11AQ9UQ88 783 aaPredicted RBP12.14□□□□□ -0.47
PDLIM1-203ENST00000490391 RNF17Q9BXT8 1623 aaKnown RBP12.14□□□□□ -0.47
PDLIM1-203ENST00000490391 LRRC7Q96NW7 1537 aa12.13□□□□□ -0.47
PDLIM1-203ENST00000490391 LRRIQ1Q96JM4 1722 aa12.12□□□□□ -0.47
PDLIM1-203ENST00000490391 SGIP1Q9BQI5 828 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms