RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, humanhuman

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRD9-208ENST00000489816 RALGAPBQ86X10 1494 aa21.22■□□□□ 0.99
BRD9-208ENST00000489816 SHANK2Q9UPX8 1470 aa21.22■□□□□ 0.99
BRD9-208ENST00000489816 CDC42BPBQ9Y5S2 1711 aa21.22■□□□□ 0.99
BRD9-208ENST00000489816 NUDCQ9Y266 331 aa21.21■□□□□ 0.99
BRD9-208ENST00000489816 RSPH4AQ5TD94 716 aa21.2■□□□□ 0.98
BRD9-208ENST00000489816 TTC37Q6PGP7 1564 aa21.2■□□□□ 0.98
BRD9-208ENST00000489816 UHRF1BP1Q6BDS2 1440 aa21.2■□□□□ 0.98
BRD9-208ENST00000489816 MYT1Q01538 1121 aa21.2■□□□□ 0.98
BRD9-208ENST00000489816 CHD1O14646 1710 aa21.19■□□□□ 0.98
BRD9-208ENST00000489816 PANK3Q9H999 370 aa21.18■□□□□ 0.98
BRD9-208ENST00000489816 PLA2R1Q13018 1463 aa21.17■□□□□ 0.98
BRD9-208ENST00000489816 EFCAB2Q5VUJ9 269 aa21.17■□□□□ 0.98
BRD9-208ENST00000489816 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.17■□□□□ 0.982e-9■■■□□ 19.1
BRD9-208ENST00000489816 CCDC136Q96JN2 1154 aa21.16■□□□□ 0.98
BRD9-208ENST00000489816 MYBBP1AQ9BQG0 1328 aaKnown RBP21.15■□□□□ 0.98
BRD9-208ENST00000489816 ARHGEF12Q9NZN5 1544 aa21.15■□□□□ 0.98
BRD9-208ENST00000489816 DISP3Q9P2K9 1392 aa21.14■□□□□ 0.97
BRD9-208ENST00000489816 ARID4BQ4LE39 1312 aaPredicted RBP21.14■□□□□ 0.97
BRD9-208ENST00000489816 CDCA7LQ96GN5 454 aa21.13■□□□□ 0.97
BRD9-208ENST00000489816 PRAG1Q86YV5 1406 aa21.13■□□□□ 0.97
BRD9-208ENST00000489816 SENP3Q9H4L4 574 aaPredicted RBP21.12■□□□□ 0.97
BRD9-208ENST00000489816 TRAPPC8Q9Y2L5 1435 aa21.12■□□□□ 0.97
BRD9-208ENST00000489816 ARHGEF5Q12774 1597 aa21.11■□□□□ 0.97
BRD9-208ENST00000489816 TESK2Q96S53 571 aa21.11■□□□□ 0.97
BRD9-208ENST00000489816 A2MP01023 1474 aa21.11■□□□□ 0.97
BRD9-208ENST00000489816 PREX2Q70Z35 1606 aa21.1■□□□□ 0.97
BRD9-208ENST00000489816 POLR1AO95602 1720 aaPredicted RBP21.1■□□□□ 0.97
BRD9-208ENST00000489816 RALBP1Q15311 655 aa21.1■□□□□ 0.97
BRD9-208ENST00000489816 SPAG9O60271 1321 aaKnown RBP21.1■□□□□ 0.97
BRD9-208ENST00000489816 PER1O15534 1290 aaPredicted RBP21.09■□□□□ 0.97
BRD9-208ENST00000489816 SMG6Q86US8 1419 aaKnown RBP21.08■□□□□ 0.97
BRD9-208ENST00000489816 KTN1Q86UP2 1357 aaKnown RBP21.08■□□□□ 0.97
BRD9-208ENST00000489816 NLRP13Q86W25 1043 aa21.07■□□□□ 0.96
BRD9-208ENST00000489816 KIF3BO15066 747 aa21.07■□□□□ 0.96
BRD9-208ENST00000489816 KDM5DQ9BY66 1539 aa21.07■□□□□ 0.96
BRD9-208ENST00000489816 ERICH6BQ5W0A0 696 aa21.07■□□□□ 0.96
BRD9-208ENST00000489816 PLIN1O60240 522 aa21.06■□□□□ 0.96
BRD9-208ENST00000489816 ERICH6Q7L0X2 663 aa21.05■□□□□ 0.96
BRD9-208ENST00000489816 TMF1P82094 1093 aa21.05■□□□□ 0.96
BRD9-208ENST00000489816 ABCC2Q92887 1545 aa21.03■□□□□ 0.96
BRD9-208ENST00000489816 EXOC6Q8TAG9 804 aa21.03■□□□□ 0.96
BRD9-208ENST00000489816 BRD4O60885 1362 aaPredicted RBP21.03■□□□□ 0.96
BRD9-208ENST00000489816 CHGAP10645 457 aaKnown RBP21.02■□□□□ 0.96
BRD9-208ENST00000489816 PLCH2O75038 1416 aa21.01■□□□□ 0.95
BRD9-208ENST00000489816 RCAN3Q9UKA8 241 aa21■□□□□ 0.95
BRD9-208ENST00000489816 ERBINQ96RT1 1412 aa20.98■□□□□ 0.95
BRD9-208ENST00000489816 LRPPRCP42704 1394 aaKnown RBP20.98■□□□□ 0.95
BRD9-208ENST00000489816 SKAP1Q86WV1 359 aa20.97■□□□□ 0.95
BRD9-208ENST00000489816 ADAMTS8Q9UP79 889 aa20.97■□□□□ 0.95
BRD9-208ENST00000489816 KNSTRNQ9Y448 316 aa20.96■□□□□ 0.95
BRD9-208ENST00000489816 MYO5CQ9NQX4 1742 aa20.96■□□□□ 0.95
BRD9-208ENST00000489816 PARD3Q8TEW0 1356 aa20.95■□□□□ 0.94
BRD9-208ENST00000489816 TRPM1Q7Z4N2 1603 aa20.95■□□□□ 0.94
BRD9-208ENST00000489816 SCAPERQ9BY12 1400 aa20.95■□□□□ 0.94
BRD9-208ENST00000489816 CFAP70Q5T0N1 1121 aa20.95■□□□□ 0.94
BRD9-208ENST00000489816 RRP1P56182 461 aaKnown RBP20.95■□□□□ 0.94
BRD9-208ENST00000489816 DUOX2Q9NRD8 1548 aa20.93■□□□□ 0.94
BRD9-208ENST00000489816 FANCIQ9NVI1 1328 aa20.92■□□□□ 0.94
BRD9-208ENST00000489816 NUTM2DQ5VT03 806 aaPredicted RBP20.91■□□□□ 0.94
BRD9-208ENST00000489816 RNF123Q5XPI4 1314 aa20.91■□□□□ 0.94
BRD9-208ENST00000489816 ZCCHC11Q5TAX3 1644 aaKnown RBP20.91■□□□□ 0.94
BRD9-208ENST00000489816 CCDC146Q8IYE0 955 aa20.91■□□□□ 0.94
BRD9-208ENST00000489816 GPRASP1Q5JY77 1395 aa20.91■□□□□ 0.94
BRD9-208ENST00000489816 NPM2Q86SE8 214 aaKnown RBP20.91■□□□□ 0.94
BRD9-208ENST00000489816 SHROOM2Q13796 1616 aa20.9■□□□□ 0.94
BRD9-208ENST00000489816 GGT6Q6P531 493 aa20.89■□□□□ 0.94
BRD9-208ENST00000489816 COL17A1Q9UMD9 1497 aaPredicted RBP20.89■□□□□ 0.94
BRD9-208ENST00000489816 UNC13BO14795 1591 aa20.89■□□□□ 0.93
BRD9-208ENST00000489816 TNNT2P45379 298 aaPredicted RBP20.88■□□□□ 0.93
BRD9-208ENST00000489816 ADGRF5Q8IZF2 1346 aa20.87■□□□□ 0.93
BRD9-208ENST00000489816 WDR43Q15061 677 aaKnown RBP eCLIP20.87■□□□□ 0.93
BRD9-208ENST00000489816 PPP2R1AP30153 589 aa20.86■□□□□ 0.93
BRD9-208ENST00000489816 PAK3O75914 559 aaPredicted RBP20.86■□□□□ 0.93
BRD9-208ENST00000489816 IQGAP3Q86VI3 1631 aa20.86■□□□□ 0.93
BRD9-208ENST00000489816 C20orf194Q5TEA3 1177 aa20.85■□□□□ 0.93
BRD9-208ENST00000489816 MAST1Q9Y2H9 1570 aa20.84■□□□□ 0.93
BRD9-208ENST00000489816 NBR1Q14596 966 aa20.84■□□□□ 0.93
BRD9-208ENST00000489816 MAGI2Q86UL8 1455 aa20.84■□□□□ 0.93
BRD9-208ENST00000489816 ABCC1P33527 1531 aa20.83■□□□□ 0.93
BRD9-208ENST00000489816 UGGT1Q9NYU2 1555 aa20.83■□□□□ 0.92
BRD9-208ENST00000489816 FANCAO15360 1455 aa20.83■□□□□ 0.92
BRD9-208ENST00000489816 PLXNC1O60486 1568 aa20.82■□□□□ 0.92
BRD9-208ENST00000489816 PRDM15P57071 1507 aaPredicted RBP20.82■□□□□ 0.92
BRD9-208ENST00000489816 AMER1Q5JTC6 1135 aaPredicted RBP20.82■□□□□ 0.92
BRD9-208ENST00000489816 ATP10AO60312 1499 aa20.82■□□□□ 0.92
BRD9-208ENST00000489816 CRBNQ96SW2 442 aa20.81■□□□□ 0.92
BRD9-208ENST00000489816 TRAK1Q9UPV9 953 aa20.81■□□□□ 0.92
BRD9-208ENST00000489816 TMEM132EQ6IEE7 984 aa20.81■□□□□ 0.92
BRD9-208ENST00000489816 E9PCH4 1651 aa20.8■□□□□ 0.92
BRD9-208ENST00000489816 KANK1Q14678 1352 aa20.8■□□□□ 0.92
BRD9-208ENST00000489816 CFAP65Q6ZU64 1925 aaKnown RBP20.8■□□□□ 0.92
BRD9-208ENST00000489816 NPM1P06748 294 aaKnown RBP eCLIP20.77■□□□□ 0.91
BRD9-208ENST00000489816 SAFB2Q14151 953 aaKnown RBP eCLIP20.77■□□□□ 0.91
BRD9-208ENST00000489816 NEUROD2Q15784 382 aa20.77■□□□□ 0.91
BRD9-208ENST00000489816 ADGRL1O94910 1474 aa20.77■□□□□ 0.91
BRD9-208ENST00000489816 PDE3BQ13370 1112 aa20.76■□□□□ 0.91
BRD9-208ENST00000489816 WASHC2CQ9Y4E1 1318 aa20.76■□□□□ 0.91
BRD9-208ENST00000489816 WDR7Q9Y4E6 1490 aa20.76■□□□□ 0.91
BRD9-208ENST00000489816 APAF1O14727 1248 aa20.75■□□□□ 0.91
BRD9-208ENST00000489816 PLEKHH1Q9ULM0 1364 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms