RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 BHMG1C9JSJ3 638 aaPredicted RBP8.98□□□□□ -0.97
CPSF3-205ENST00000489629 DDX12PQ92771 950 aa8.98□□□□□ -0.97
CPSF3-205ENST00000489629 PPP1R3GB7ZBB8 358 aa8.97□□□□□ -0.97
CPSF3-205ENST00000489629 COL9A1P20849 921 aa8.97□□□□□ -0.97
CPSF3-205ENST00000489629 PLCB2Q00722 1185 aa8.96□□□□□ -0.98
CPSF3-205ENST00000489629 C6orf132Q5T0Z8 1188 aa8.96□□□□□ -0.98
CPSF3-205ENST00000489629 EN1Q05925 392 aaPredicted RBP8.93□□□□□ -0.98
CPSF3-205ENST00000489629 PRIM1P49642 420 aaKnown RBP8.92□□□□□ -0.98
CPSF3-205ENST00000489629 NBR1Q14596 966 aa8.92□□□□□ -0.98
CPSF3-205ENST00000489629 PROX2Q3B8N5 592 aa8.92□□□□□ -0.98
CPSF3-205ENST00000489629 RBM33Q96EV2 1170 aaKnown RBP8.92□□□□□ -0.98
CPSF3-205ENST00000489629 STAC3Q96MF2 364 aa8.91□□□□□ -0.98
CPSF3-205ENST00000489629 KCNV2Q8TDN2 545 aa8.9□□□□□ -0.98
CPSF3-205ENST00000489629 ARHGEF1Q92888 912 aaKnown RBP8.9□□□□□ -0.98
CPSF3-205ENST00000489629 ONECUT3O60422 494 aaPredicted RBP8.89□□□□□ -0.99
CPSF3-205ENST00000489629 TSR1Q2NL82 804 aaKnown RBP8.89□□□□□ -0.99
CPSF3-205ENST00000489629 KCTD12Q96CX2 325 aaKnown RBP8.89□□□□□ -0.99
CPSF3-205ENST00000489629 HCSTQ9UBK5 93 aa8.89□□□□□ -0.99
CPSF3-205ENST00000489629 RABGEF1Q9UJ41 708 aa8.89□□□□□ -0.99
CPSF3-205ENST00000489629 GRXCR2A6NFK2 248 aa8.88□□□□□ -0.99
CPSF3-205ENST00000489629 OSBPP22059 807 aa8.88□□□□□ -0.99
CPSF3-205ENST00000489629 MAP3K7O43318 606 aa8.87□□□□□ -0.99
CPSF3-205ENST00000489629 MRPL50Q8N5N7 158 aaKnown RBP8.87□□□□□ -0.99
CPSF3-205ENST00000489629 NBPF3Q9H094 633 aa8.86□□□□□ -0.99
CPSF3-205ENST00000489629 TRIM6-TRIM34B2RNG4 842 aa8.85□□□□□ -0.99
CPSF3-205ENST00000489629 KIAA1468Q9P260 1216 aa8.85□□□□□ -0.99
CPSF3-205ENST00000489629 THSD4Q6ZMP0 1018 aa8.83□□□□□ -1
CPSF3-205ENST00000489629 MLLT3P42568 568 aaPredicted RBP8.82□□□□□ -1
CPSF3-205ENST00000489629 LAPTM4BQ86VI4 370 aa8.82□□□□□ -1
CPSF3-205ENST00000489629 WNT2BQ93097 391 aa8.82□□□□□ -1
CPSF3-205ENST00000489629 TSKSQ9UJT2 592 aa8.82□□□□□ -1
CPSF3-205ENST00000489629 GOLGA8CPA6NN73 597 aa8.81□□□□□ -1
CPSF3-205ENST00000489629 CDHR5Q9HBB8 845 aa8.81□□□□□ -1
CPSF3-205ENST00000489629 P3H3Q8IVL6 736 aa8.8□□□□□ -1
CPSF3-205ENST00000489629 CERKQ8TCT0 537 aa8.8□□□□□ -1
CPSF3-205ENST00000489629 FAM198AQ9UFP1 575 aa8.8□□□□□ -1
CPSF3-205ENST00000489629 PTPN5P54829 565 aa8.79□□□□□ -1
CPSF3-205ENST00000489629 PRSS12P56730 875 aa8.79□□□□□ -1
CPSF3-205ENST00000489629 CDCA7LQ96GN5 454 aa8.79□□□□□ -1
CPSF3-205ENST00000489629 NPDC1Q9NQX5 325 aaPredicted RBP8.79□□□□□ -1
CPSF3-205ENST00000489629 SEPT9Q9UHD8 586 aaPredicted RBP8.79□□□□□ -1
CPSF3-205ENST00000489629 HAP1P54257 671 aaPredicted RBP8.78□□□□□ -1
CPSF3-205ENST00000489629 ZFRQ96KR1 1074 aaKnown RBP8.77□□□□□ -1.01
CPSF3-205ENST00000489629 C3orf80F5H4A9 247 aa8.76□□□□□ -1.01
CPSF3-205ENST00000489629 FAM98CQ17RN3 349 aaKnown RBP8.76□□□□□ -1.01
CPSF3-205ENST00000489629 PACS2Q86VP3 889 aa8.76□□□□□ -1.01
CPSF3-205ENST00000489629 ANKK1Q8NFD2 765 aa8.76□□□□□ -1.01
CPSF3-205ENST00000489629 PLA2G2EQ9NZK7 142 aa8.76□□□□□ -1.01
CPSF3-205ENST00000489629 KDM2AQ9Y2K7 1162 aa8.76□□□□□ -1.01
CPSF3-205ENST00000489629 SOWAHBA6NEL2 793 aa8.75□□□□□ -1.01
CPSF3-205ENST00000489629 TTC13Q8NBP0 860 aa8.75□□□□□ -1.01
CPSF3-205ENST00000489629 RBM27Q9P2N5 1060 aaKnown RBP8.75□□□□□ -1.01
CPSF3-205ENST00000489629 SEMA3EO15041 775 aa8.74□□□□□ -1.01
CPSF3-205ENST00000489629 BCAMP50895 628 aa8.74□□□□□ -1.01
CPSF3-205ENST00000489629 SMAPO00193 183 aa8.72□□□□□ -1.01
CPSF3-205ENST00000489629 TATDN2Q93075 761 aa8.71□□□□□ -1.02
CPSF3-205ENST00000489629 NBPF26B4DH59 902 aa8.7□□□□□ -1.02
CPSF3-205ENST00000489629 PADI6Q6TGC4 694 aa8.7□□□□□ -1.02
CPSF3-205ENST00000489629 PNMA3Q9UL41 463 aa8.7□□□□□ -1.02
CPSF3-205ENST00000489629 TESPA1A2RU30 521 aaPredicted RBP8.69□□□□□ -1.02
CPSF3-205ENST00000489629 PTGDRQ13258 359 aa8.69□□□□□ -1.02
CPSF3-205ENST00000489629 IFFO2Q5TF58 517 aa8.68□□□□□ -1.02
CPSF3-205ENST00000489629 NUDT18Q6ZVK8 323 aa8.68□□□□□ -1.02
CPSF3-205ENST00000489629 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.68□□□□□ -1.02
CPSF3-205ENST00000489629 LRCH3Q96II8 777 aa8.67□□□□□ -1.02
CPSF3-205ENST00000489629 WBP1LQ9NX94 342 aa8.67□□□□□ -1.02
CPSF3-205ENST00000489629 NYAP1Q6ZVC0 841 aa8.66□□□□□ -1.02
CPSF3-205ENST00000489629 VSIG10Q8N0Z9 540 aa8.66□□□□□ -1.02
CPSF3-205ENST00000489629 TSR3Q9UJK0 312 aaKnown RBP8.66□□□□□ -1.02
CPSF3-205ENST00000489629 SAMD7Q7Z3H4 446 aa8.65□□□□□ -1.02
CPSF3-205ENST00000489629 EYA1Q99502 592 aa8.65□□□□□ -1.02
CPSF3-205ENST00000489629 HPS5Q9UPZ3 1129 aa8.65□□□□□ -1.02
CPSF3-205ENST00000489629 NUTM2FA1L443 756 aa8.63□□□□□ -1.03
CPSF3-205ENST00000489629 ITGBL1O95965 494 aaPredicted RBP8.63□□□□□ -1.03
CPSF3-205ENST00000489629 FCHSD2O94868 740 aa8.61□□□□□ -1.03
CPSF3-205ENST00000489629 RBM26Q5T8P6 1007 aaKnown RBP8.61□□□□□ -1.03
CPSF3-205ENST00000489629 PPP4CP60510 307 aa8.6□□□□□ -1.03
CPSF3-205ENST00000489629 SMYD5Q6GMV2 418 aa8.6□□□□□ -1.03
CPSF3-205ENST00000489629 SWT1Q5T5J6 900 aaKnown RBP8.59□□□□□ -1.03
CPSF3-205ENST00000489629 ADGRG1Q9Y653 693 aa8.59□□□□□ -1.03
CPSF3-205ENST00000489629 GPR37O15354 613 aa8.58□□□□□ -1.04
CPSF3-205ENST00000489629 A0A0G2JS52 829 aa8.57□□□□□ -1.04
CPSF3-205ENST00000489629 HDGFP51858 240 aaKnown RBP8.56□□□□□ -1.04
CPSF3-205ENST00000489629 HIC1Q14526 733 aa8.56□□□□□ -1.04
CPSF3-205ENST00000489629 FAM161AQ3B820 660 aa8.56□□□□□ -1.04
CPSF3-205ENST00000489629 RBM46Q8TBY0 533 aaKnown RBP8.55□□□□□ -1.04
CPSF3-205ENST00000489629 DNAJB2P25686 324 aa8.54□□□□□ -1.04
CPSF3-205ENST00000489629 KCNC4Q03721 635 aa8.54□□□□□ -1.04
CPSF3-205ENST00000489629 TJAP1Q5JTD0 557 aa8.54□□□□□ -1.04
CPSF3-205ENST00000489629 SLF2Q8IX21 1173 aa8.54□□□□□ -1.04
CPSF3-205ENST00000489629 FECHP22830 423 aa8.53□□□□□ -1.04
CPSF3-205ENST00000489629 APLP1P51693 650 aa8.53□□□□□ -1.04
CPSF3-205ENST00000489629 TMEM134Q9H6X4 195 aa8.53□□□□□ -1.04
CPSF3-205ENST00000489629 RCCD1A6NED2 376 aa8.52□□□□□ -1.05
CPSF3-205ENST00000489629 GNPATO15228 680 aa8.52□□□□□ -1.05
CPSF3-205ENST00000489629 RNF40O75150 1001 aa8.52□□□□□ -1.05
CPSF3-205ENST00000489629 PXYLP1Q8TE99 480 aa8.52□□□□□ -1.05
CPSF3-205ENST00000489629 RGS20O76081 388 aa8.51□□□□□ -1.05
CPSF3-205ENST00000489629 NECTIN2Q92692 538 aa8.5□□□□□ -1.05
CPSF3-205ENST00000489629 MTRQ99707 1265 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms