RNA–Protein interactions for RNA: ENST00000487825.5

BRCA1-217, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 800 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-217ENST00000487825 GRXCR2A6NFK2 248 aa11.53□□□□□ -0.56
BRCA1-217ENST00000487825 TK2O00142 265 aa11.53□□□□□ -0.56
BRCA1-217ENST00000487825 NBR1Q14596 966 aa11.53□□□□□ -0.56
BRCA1-217ENST00000487825 RNF166Q96A37 237 aaPredicted RBP11.52□□□□□ -0.57
BRCA1-217ENST00000487825 ARHGEF1Q92888 912 aaKnown RBP11.51□□□□□ -0.57
BRCA1-217ENST00000487825 COL9A1P20849 921 aa11.5□□□□□ -0.57
BRCA1-217ENST00000487825 VPS9D1Q9Y2B5 631 aa11.5□□□□□ -0.57
BRCA1-217ENST00000487825 ZBED2Q9BTP6 218 aa11.49□□□□□ -0.57
BRCA1-217ENST00000487825 HRO43593 1189 aa11.48□□□□□ -0.57
BRCA1-217ENST00000487825 C6orf132Q5T0Z8 1188 aa11.48□□□□□ -0.57
BRCA1-217ENST00000487825 STAC3Q96MF2 364 aa11.48□□□□□ -0.57
BRCA1-217ENST00000487825 PPP1R3GB7ZBB8 358 aa11.47□□□□□ -0.57
BRCA1-217ENST00000487825 MAP3K7O43318 606 aa11.47□□□□□ -0.57
BRCA1-217ENST00000487825 P3H3Q8IVL6 736 aa11.47□□□□□ -0.57
BRCA1-217ENST00000487825 KDM2AQ9Y2K7 1162 aa11.47□□□□□ -0.57
BRCA1-217ENST00000487825 EN1Q05925 392 aaPredicted RBP11.46□□□□□ -0.57
BRCA1-217ENST00000487825 SLC4A5Q9BY07 1137 aa11.46□□□□□ -0.57
BRCA1-217ENST00000487825 TSR1Q2NL82 804 aaKnown RBP11.45□□□□□ -0.58
BRCA1-217ENST00000487825 PROX2Q3B8N5 592 aa11.45□□□□□ -0.58
BRCA1-217ENST00000487825 PRIM1P49642 420 aaKnown RBP11.44□□□□□ -0.58
BRCA1-217ENST00000487825 OSBPP22059 807 aa11.42□□□□□ -0.58
BRCA1-217ENST00000487825 MLLT3P42568 568 aaPredicted RBP11.41□□□□□ -0.58
BRCA1-217ENST00000487825 BHMG1C9JSJ3 638 aaPredicted RBP11.39□□□□□ -0.59
BRCA1-217ENST00000487825 SEMA3EO15041 775 aa11.37□□□□□ -0.59
BRCA1-217ENST00000487825 VSIG10Q8N0Z9 540 aa11.37□□□□□ -0.59
BRCA1-217ENST00000487825 MRPL50Q8N5N7 158 aaKnown RBP11.37□□□□□ -0.59
BRCA1-217ENST00000487825 KCTD12Q96CX2 325 aaKnown RBP11.37□□□□□ -0.59
BRCA1-217ENST00000487825 CDHR5Q9HBB8 845 aa11.36□□□□□ -0.59
BRCA1-217ENST00000487825 KIAA1468Q9P260 1216 aa11.36□□□□□ -0.59
BRCA1-217ENST00000487825 ABCC9O60706 1549 aa11.35□□□□□ -0.59
BRCA1-217ENST00000487825 NBPF3Q9H094 633 aa11.35□□□□□ -0.59
BRCA1-217ENST00000487825 RABGEF1Q9UJ41 708 aa11.35□□□□□ -0.59
BRCA1-217ENST00000487825 GOLGA8CPA6NN73 597 aa11.34□□□□□ -0.59
BRCA1-217ENST00000487825 TRIM6-TRIM34B2RNG4 842 aa11.34□□□□□ -0.59
BRCA1-217ENST00000487825 SEPT9Q9UHD8 586 aaPredicted RBP11.31□□□□□ -0.6
BRCA1-217ENST00000487825 TSKSQ9UJT2 592 aa11.31□□□□□ -0.6
BRCA1-217ENST00000487825 CDCA7LQ96GN5 454 aa11.3□□□□□ -0.6
BRCA1-217ENST00000487825 ONECUT3O60422 494 aaPredicted RBP11.29□□□□□ -0.6
BRCA1-217ENST00000487825 PRSS12P56730 875 aa11.29□□□□□ -0.6
BRCA1-217ENST00000487825 CERKQ8TCT0 537 aa11.29□□□□□ -0.6
BRCA1-217ENST00000487825 WNT2BQ93097 391 aa11.29□□□□□ -0.6
BRCA1-217ENST00000487825 PACS2Q86VP3 889 aa11.28□□□□□ -0.6
BRCA1-217ENST00000487825 HCSTQ9UBK5 93 aa11.28□□□□□ -0.6
BRCA1-217ENST00000487825 PTPN5P54829 565 aa11.27□□□□□ -0.61
BRCA1-217ENST00000487825 NPDC1Q9NQX5 325 aaPredicted RBP11.27□□□□□ -0.61
BRCA1-217ENST00000487825 FAM198AQ9UFP1 575 aa11.27□□□□□ -0.61
BRCA1-217ENST00000487825 NUTM2FA1L443 756 aa11.25□□□□□ -0.61
BRCA1-217ENST00000487825 TESPA1A2RU30 521 aaPredicted RBP11.25□□□□□ -0.61
BRCA1-217ENST00000487825 SMAPO00193 183 aa11.24□□□□□ -0.61
BRCA1-217ENST00000487825 THSD4Q6ZMP0 1018 aa11.24□□□□□ -0.61
BRCA1-217ENST00000487825 LAPTM4BQ86VI4 370 aa11.24□□□□□ -0.61
BRCA1-217ENST00000487825 C3orf80F5H4A9 247 aa11.23□□□□□ -0.61
BRCA1-217ENST00000487825 ZFRQ96KR1 1074 aaKnown RBP11.23□□□□□ -0.61
BRCA1-217ENST00000487825 FAM98CQ17RN3 349 aaKnown RBP11.22□□□□□ -0.61
BRCA1-217ENST00000487825 ANKK1Q8NFD2 765 aa11.22□□□□□ -0.61
BRCA1-217ENST00000487825 PADI6Q6TGC4 694 aa11.21□□□□□ -0.61
BRCA1-217ENST00000487825 PNMA3Q9UL41 463 aa11.21□□□□□ -0.61
BRCA1-217ENST00000487825 BCAMP50895 628 aa11.2□□□□□ -0.62
BRCA1-217ENST00000487825 RBM26Q5T8P6 1007 aaKnown RBP11.2□□□□□ -0.62
BRCA1-217ENST00000487825 SMYD5Q6GMV2 418 aa11.2□□□□□ -0.62
BRCA1-217ENST00000487825 TATDN2Q93075 761 aa11.2□□□□□ -0.62
BRCA1-217ENST00000487825 NBPF26B4DH59 902 aa11.19□□□□□ -0.62
BRCA1-217ENST00000487825 PTGDRQ13258 359 aa11.19□□□□□ -0.62
BRCA1-217ENST00000487825 NUDT18Q6ZVK8 323 aa11.19□□□□□ -0.62
BRCA1-217ENST00000487825 RBM27Q9P2N5 1060 aaKnown RBP11.19□□□□□ -0.62
BRCA1-217ENST00000487825 SOWAHBA6NEL2 793 aa11.16□□□□□ -0.62
BRCA1-217ENST00000487825 TTC13Q8NBP0 860 aa11.16□□□□□ -0.62
BRCA1-217ENST00000487825 FCHSD2O94868 740 aa11.14□□□□□ -0.63
BRCA1-217ENST00000487825 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.14□□□□□ -0.63
BRCA1-217ENST00000487825 SAMD7Q7Z3H4 446 aa11.13□□□□□ -0.63
BRCA1-217ENST00000487825 LRCH3Q96II8 777 aa11.13□□□□□ -0.63
BRCA1-217ENST00000487825 FAM161AQ3B820 660 aa11.11□□□□□ -0.63
BRCA1-217ENST00000487825 WBP1LQ9NX94 342 aa11.11□□□□□ -0.63
BRCA1-217ENST00000487825 PLA2G2EQ9NZK7 142 aa11.11□□□□□ -0.63
BRCA1-217ENST00000487825 HPS5Q9UPZ3 1129 aa11.1□□□□□ -0.63
BRCA1-217ENST00000487825 EYA1Q99502 592 aa11.08□□□□□ -0.64
BRCA1-217ENST00000487825 RNF40O75150 1001 aa11.07□□□□□ -0.64
BRCA1-217ENST00000487825 HDGFP51858 240 aaKnown RBP11.07□□□□□ -0.64
BRCA1-217ENST00000487825 HIC1Q14526 733 aa11.07□□□□□ -0.64
BRCA1-217ENST00000487825 TSR3Q9UJK0 312 aaKnown RBP11.07□□□□□ -0.64
BRCA1-217ENST00000487825 ADGRG1Q9Y653 693 aa11.06□□□□□ -0.64
BRCA1-217ENST00000487825 TULP1O00294 542 aaPredicted RBP11.05□□□□□ -0.64
BRCA1-217ENST00000487825 FECHP22830 423 aa11.05□□□□□ -0.64
BRCA1-217ENST00000487825 PPP4CP60510 307 aa11.05□□□□□ -0.64
BRCA1-217ENST00000487825 GPIHBP1Q8IV16 184 aa11.05□□□□□ -0.64
BRCA1-217ENST00000487825 GPR37O15354 613 aa11.04□□□□□ -0.64
BRCA1-217ENST00000487825 SWT1Q5T5J6 900 aaKnown RBP11.04□□□□□ -0.64
BRCA1-217ENST00000487825 RBM46Q8TBY0 533 aaKnown RBP11.04□□□□□ -0.64
BRCA1-217ENST00000487825 GNPATO15228 680 aa11.03□□□□□ -0.64
BRCA1-217ENST00000487825 DNAJB2P25686 324 aa11□□□□□ -0.65
BRCA1-217ENST00000487825 NYAP1Q6ZVC0 841 aa11□□□□□ -0.65
BRCA1-217ENST00000487825 RCCD1A6NED2 376 aa10.99□□□□□ -0.65
BRCA1-217ENST00000487825 CCDC180Q9P1Z9 1646 aa10.98□□□□□ -0.65
BRCA1-217ENST00000487825 OATP04181 439 aa10.97□□□□□ -0.65
BRCA1-217ENST00000487825 SLF2Q8IX21 1173 aa10.97□□□□□ -0.65
BRCA1-217ENST00000487825 PXYLP1Q8TE99 480 aa10.97□□□□□ -0.65
BRCA1-217ENST00000487825 TMEM134Q9H6X4 195 aa10.96□□□□□ -0.65
BRCA1-217ENST00000487825 SLC4A3P48751 1232 aa10.95□□□□□ -0.66
BRCA1-217ENST00000487825 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.95□□□□□ -0.66
BRCA1-217ENST00000487825 METTL3Q86U44 580 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms