RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 KCTD12Q96CX2 325 aaKnown RBP12.53□□□□□ -0.4
SMC4-219ENST00000487747 PROX2Q3B8N5 592 aa12.52□□□□□ -0.41
SMC4-219ENST00000487747 RBM33Q96EV2 1170 aaKnown RBP12.52□□□□□ -0.41
SMC4-219ENST00000487747 PPP1R3GB7ZBB8 358 aa12.51□□□□□ -0.41
SMC4-219ENST00000487747 STAC3Q96MF2 364 aa12.51□□□□□ -0.41
SMC4-219ENST00000487747 C6orf132Q5T0Z8 1188 aa12.5□□□□□ -0.41
SMC4-219ENST00000487747 EPAS1Q99814 870 aa12.5□□□□□ -0.41
SMC4-219ENST00000487747 PRIM1P49642 420 aaKnown RBP12.48□□□□□ -0.41
SMC4-219ENST00000487747 ARIH1Q9Y4X5 557 aaPredicted RBP12.48□□□□□ -0.41
SMC4-219ENST00000487747 SPDYE16A6NNV3 312 aaPredicted RBP12.47□□□□□ -0.41
SMC4-219ENST00000487747 NBR1Q14596 966 aa12.47□□□□□ -0.41
SMC4-219ENST00000487747 HCSTQ9UBK5 93 aa12.47□□□□□ -0.41
SMC4-219ENST00000487747 TSR1Q2NL82 804 aaKnown RBP12.45□□□□□ -0.42
SMC4-219ENST00000487747 GRXCR2A6NFK2 248 aa12.43□□□□□ -0.42
SMC4-219ENST00000487747 EN1Q05925 392 aaPredicted RBP12.43□□□□□ -0.42
SMC4-219ENST00000487747 MRPL50Q8N5N7 158 aaKnown RBP12.43□□□□□ -0.42
SMC4-219ENST00000487747 RABGEF1Q9UJ41 708 aa12.42□□□□□ -0.42
SMC4-219ENST00000487747 MAP3K7O43318 606 aa12.41□□□□□ -0.42
SMC4-219ENST00000487747 PTPN5P54829 565 aa12.4□□□□□ -0.42
SMC4-219ENST00000487747 KIAA1468Q9P260 1216 aa12.4□□□□□ -0.42
SMC4-219ENST00000487747 WNT2BQ93097 391 aa12.39□□□□□ -0.43
SMC4-219ENST00000487747 NBPF3Q9H094 633 aa12.39□□□□□ -0.43
SMC4-219ENST00000487747 THSD4Q6ZMP0 1018 aa12.38□□□□□ -0.43
SMC4-219ENST00000487747 KCNV2Q8TDN2 545 aa12.38□□□□□ -0.43
SMC4-219ENST00000487747 GOLGA8CPA6NN73 597 aa12.37□□□□□ -0.43
SMC4-219ENST00000487747 OSBPP22059 807 aa12.37□□□□□ -0.43
SMC4-219ENST00000487747 TRIM6-TRIM34B2RNG4 842 aa12.35□□□□□ -0.43
SMC4-219ENST00000487747 PLA2G2EQ9NZK7 142 aa12.35□□□□□ -0.43
SMC4-219ENST00000487747 SEPT9Q9UHD8 586 aaPredicted RBP12.35□□□□□ -0.43
SMC4-219ENST00000487747 TSKSQ9UJT2 592 aa12.34□□□□□ -0.43
SMC4-219ENST00000487747 PLCB2Q00722 1185 aa12.33□□□□□ -0.44
SMC4-219ENST00000487747 CDHR5Q9HBB8 845 aa12.33□□□□□ -0.44
SMC4-219ENST00000487747 ONECUT3O60422 494 aaPredicted RBP12.31□□□□□ -0.44
SMC4-219ENST00000487747 ARHGEF1Q92888 912 aaKnown RBP12.31□□□□□ -0.44
SMC4-219ENST00000487747 FAM198AQ9UFP1 575 aa12.31□□□□□ -0.44
SMC4-219ENST00000487747 MLLT3P42568 568 aaPredicted RBP12.3□□□□□ -0.44
SMC4-219ENST00000487747 ZFRQ96KR1 1074 aaKnown RBP12.3□□□□□ -0.44
SMC4-219ENST00000487747 C3orf80F5H4A9 247 aa12.29□□□□□ -0.44
SMC4-219ENST00000487747 BCAMP50895 628 aa12.29□□□□□ -0.44
SMC4-219ENST00000487747 LAPTM4BQ86VI4 370 aa12.28□□□□□ -0.44
SMC4-219ENST00000487747 CDCA7LQ96GN5 454 aa12.28□□□□□ -0.44
SMC4-219ENST00000487747 PRSS12P56730 875 aa12.26□□□□□ -0.45
SMC4-219ENST00000487747 ANKK1Q8NFD2 765 aa12.26□□□□□ -0.45
SMC4-219ENST00000487747 SMAPO00193 183 aa12.25□□□□□ -0.45
SMC4-219ENST00000487747 FAM98CQ17RN3 349 aaKnown RBP12.24□□□□□ -0.45
SMC4-219ENST00000487747 NPDC1Q9NQX5 325 aaPredicted RBP12.24□□□□□ -0.45
SMC4-219ENST00000487747 SOWAHBA6NEL2 793 aa12.23□□□□□ -0.45
SMC4-219ENST00000487747 PACS2Q86VP3 889 aa12.23□□□□□ -0.45
SMC4-219ENST00000487747 CERKQ8TCT0 537 aa12.2□□□□□ -0.46
SMC4-219ENST00000487747 WBP1LQ9NX94 342 aa12.2□□□□□ -0.46
SMC4-219ENST00000487747 SEMA3EO15041 775 aa12.17□□□□□ -0.46
SMC4-219ENST00000487747 TATDN2Q93075 761 aa12.17□□□□□ -0.46
SMC4-219ENST00000487747 PADI6Q6TGC4 694 aa12.16□□□□□ -0.46
SMC4-219ENST00000487747 PNMA3Q9UL41 463 aa12.16□□□□□ -0.46
SMC4-219ENST00000487747 HAP1P54257 671 aaPredicted RBP12.15□□□□□ -0.46
SMC4-219ENST00000487747 NUDT18Q6ZVK8 323 aa12.15□□□□□ -0.46
SMC4-219ENST00000487747 TTC13Q8NBP0 860 aa12.15□□□□□ -0.46
SMC4-219ENST00000487747 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.15□□□□□ -0.46
SMC4-219ENST00000487747 P3H3Q8IVL6 736 aa12.14□□□□□ -0.47
SMC4-219ENST00000487747 LRCH3Q96II8 777 aa12.14□□□□□ -0.47
SMC4-219ENST00000487747 HPS5Q9UPZ3 1129 aa12.14□□□□□ -0.47
SMC4-219ENST00000487747 SAMD7Q7Z3H4 446 aa12.13□□□□□ -0.47
SMC4-219ENST00000487747 KDM2AQ9Y2K7 1162 aa12.13□□□□□ -0.47
SMC4-219ENST00000487747 RBM27Q9P2N5 1060 aaKnown RBP12.12□□□□□ -0.47
SMC4-219ENST00000487747 NBPF26B4DH59 902 aa12.11□□□□□ -0.47
SMC4-219ENST00000487747 TSR3Q9UJK0 312 aaKnown RBP12.11□□□□□ -0.47
SMC4-219ENST00000487747 PTGDRQ13258 359 aa12.09□□□□□ -0.47
SMC4-219ENST00000487747 IFFO2Q5TF58 517 aa12.08□□□□□ -0.48
SMC4-219ENST00000487747 NUTM2FA1L443 756 aa12.06□□□□□ -0.48
SMC4-219ENST00000487747 ITGBL1O95965 494 aaPredicted RBP12.06□□□□□ -0.48
SMC4-219ENST00000487747 PPP4CP60510 307 aa12.04□□□□□ -0.48
SMC4-219ENST00000487747 NYAP1Q6ZVC0 841 aa12.04□□□□□ -0.48
SMC4-219ENST00000487747 EYA1Q99502 592 aa12.04□□□□□ -0.48
SMC4-219ENST00000487747 A0A0G2JS52 829 aa12.02□□□□□ -0.49
SMC4-219ENST00000487747 TESPA1A2RU30 521 aaPredicted RBP12.02□□□□□ -0.49
SMC4-219ENST00000487747 FAM161AQ3B820 660 aa12.02□□□□□ -0.49
SMC4-219ENST00000487747 RBM26Q5T8P6 1007 aaKnown RBP12.02□□□□□ -0.49
SMC4-219ENST00000487747 SWT1Q5T5J6 900 aaKnown RBP12.01□□□□□ -0.49
SMC4-219ENST00000487747 RNF40O75150 1001 aa12□□□□□ -0.49
SMC4-219ENST00000487747 ADGRG1Q9Y653 693 aa11.97□□□□□ -0.49
SMC4-219ENST00000487747 APLP1P51693 650 aa11.96□□□□□ -0.49
SMC4-219ENST00000487747 KCNC4Q03721 635 aa11.96□□□□□ -0.49
SMC4-219ENST00000487747 FCHSD2O94868 740 aa11.95□□□□□ -0.5
SMC4-219ENST00000487747 HDGFP51858 240 aaKnown RBP11.95□□□□□ -0.5
SMC4-219ENST00000487747 TJAP1Q5JTD0 557 aa11.95□□□□□ -0.5
SMC4-219ENST00000487747 FECHP22830 423 aa11.92□□□□□ -0.5
SMC4-219ENST00000487747 MTRQ99707 1265 aa11.92□□□□□ -0.5
SMC4-219ENST00000487747 GPR37O15354 613 aa11.9□□□□□ -0.5
SMC4-219ENST00000487747 ZNF516Q92618 1163 aa11.9□□□□□ -0.5
SMC4-219ENST00000487747 RCCD1A6NED2 376 aa11.89□□□□□ -0.51
SMC4-219ENST00000487747 SLF2Q8IX21 1173 aa11.89□□□□□ -0.51
SMC4-219ENST00000487747 VSIG10Q8N0Z9 540 aa11.89□□□□□ -0.51
SMC4-219ENST00000487747 RBM46Q8TBY0 533 aaKnown RBP11.89□□□□□ -0.51
SMC4-219ENST00000487747 DNAJB2P25686 324 aa11.88□□□□□ -0.51
SMC4-219ENST00000487747 TMEM134Q9H6X4 195 aa11.88□□□□□ -0.51
SMC4-219ENST00000487747 SMYD5Q6GMV2 418 aa11.87□□□□□ -0.51
SMC4-219ENST00000487747 HIC1Q14526 733 aa11.86□□□□□ -0.51
SMC4-219ENST00000487747 RGS20O76081 388 aa11.85□□□□□ -0.51
SMC4-219ENST00000487747 PXYLP1Q8TE99 480 aa11.85□□□□□ -0.51
SMC4-219ENST00000487747 IL21Q9HBE4 155 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms