RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 EHMT2Q96KQ7 1210 aa11.6□□□□□ -0.55
USP4-211ENST00000485450 A2MP01023 1474 aa11.6□□□□□ -0.55
USP4-211ENST00000485450 PTPRKQ15262 1439 aa11.59□□□□□ -0.55
USP4-211ENST00000485450 SPATA31D1Q6ZQQ2 1576 aa11.59□□□□□ -0.55
USP4-211ENST00000485450 ANP32EQ9BTT0 268 aa11.58□□□□□ -0.56
USP4-211ENST00000485450 CLTCQ00610 1675 aaKnown RBP11.58□□□□□ -0.56
USP4-211ENST00000485450 NCOA1Q15788 1441 aa11.58□□□□□ -0.56
USP4-211ENST00000485450 ARHGAP31Q2M1Z3 1444 aa11.58□□□□□ -0.56
USP4-211ENST00000485450 CEP152O94986 1710 aa11.57□□□□□ -0.56
USP4-211ENST00000485450 RIMS1Q86UR5 1692 aaKnown RBP11.57□□□□□ -0.56
USP4-211ENST00000485450 DHX29Q7Z478 1369 aaKnown RBP11.56□□□□□ -0.56
USP4-211ENST00000485450 ABCC3O15438 1527 aa11.56□□□□□ -0.56
USP4-211ENST00000485450 EFCAB6Q5THR3 1501 aa11.55□□□□□ -0.56
USP4-211ENST00000485450 MYO3AQ8NEV4 1616 aa11.54□□□□□ -0.56
USP4-211ENST00000485450 CNTLNQ9NXG0 1405 aa11.54□□□□□ -0.56
USP4-211ENST00000485450 NPATQ14207 1427 aa11.54□□□□□ -0.56
USP4-211ENST00000485450 PPP6R1Q9UPN7 881 aa11.54□□□□□ -0.56
USP4-211ENST00000485450 HFM1A2PYH4 1435 aa11.53□□□□□ -0.56
USP4-211ENST00000485450 E9PCH4 1651 aa11.53□□□□□ -0.56
USP4-211ENST00000485450 RPRD2Q5VT52 1461 aaKnown RBP11.53□□□□□ -0.56
USP4-211ENST00000485450 KCNH8Q96L42 1107 aa11.52□□□□□ -0.57
USP4-211ENST00000485450 TRHP20396 242 aaPredicted RBP11.51□□□□□ -0.57
USP4-211ENST00000485450 PZPP20742 1482 aa11.5□□□□□ -0.57
USP4-211ENST00000485450 CFDP1Q9UEE9 299 aaPredicted RBP11.5□□□□□ -0.57
USP4-211ENST00000485450 IFT172Q9UG01 1749 aa11.5□□□□□ -0.57
USP4-211ENST00000485450 SPHKAPQ2M3C7 1700 aa11.5□□□□□ -0.57
USP4-211ENST00000485450 SYNMO15061 1565 aa11.48□□□□□ -0.57
USP4-211ENST00000485450 PTPRMP28827 1452 aa11.48□□□□□ -0.57
USP4-211ENST00000485450 UBR1Q8IWV7 1749 aa11.48□□□□□ -0.57
USP4-211ENST00000485450 ZNF644Q9H582 1327 aaPredicted RBP11.48□□□□□ -0.57
USP4-211ENST00000485450 NAIPQ13075 1403 aa11.48□□□□□ -0.57
USP4-211ENST00000485450 POLR1AO95602 1720 aaPredicted RBP11.47□□□□□ -0.57
USP4-211ENST00000485450 RANGAP1P46060 587 aaPredicted RBP11.47□□□□□ -0.57
USP4-211ENST00000485450 RAPGEF3O95398 923 aa11.45□□□□□ -0.58
USP4-211ENST00000485450 STRCQ7RTU9 1775 aa11.44□□□□□ -0.58
USP4-211ENST00000485450 NOS1P29475 1434 aa11.44□□□□□ -0.58
USP4-211ENST00000485450 UGGT1Q9NYU2 1555 aa11.44□□□□□ -0.58
USP4-211ENST00000485450 PTPRTO14522 1441 aa11.43□□□□□ -0.58
USP4-211ENST00000485450 ANKRD30AQ9BXX3 1397 aa11.43□□□□□ -0.58
USP4-211ENST00000485450 TRPM2O94759 1503 aa11.43□□□□□ -0.58
USP4-211ENST00000485450 ARID3CA6NKF2 412 aa11.43□□□□□ -0.58
USP4-211ENST00000485450 SPAG9O60271 1321 aaKnown RBP11.43□□□□□ -0.58
USP4-211ENST00000485450 KDM4FA0A1W2PPD8 638 aa11.42□□□□□ -0.58
USP4-211ENST00000485450 AFAP1Q8N556 730 aa11.42□□□□□ -0.58
USP4-211ENST00000485450 LMTK3Q96Q04 1460 aa11.42□□□□□ -0.58
USP4-211ENST00000485450 TMEM131LA2VDJ0 1609 aa11.41□□□□□ -0.58
USP4-211ENST00000485450 KIF15Q9NS87 1388 aa11.41□□□□□ -0.58
USP4-211ENST00000485450 SETD1BQ9UPS6 1966 aaKnown RBP11.41□□□□□ -0.58
USP4-211ENST00000485450 SETD1AO15047 1707 aaKnown RBP11.41□□□□□ -0.58
USP4-211ENST00000485450 SLIT1O75093 1534 aa11.41□□□□□ -0.58
USP4-211ENST00000485450 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.41□□□□□ -0.58
USP4-211ENST00000485450 HNRNPUL2Q1KMD3 747 aaKnown RBP11.41□□□□□ -0.58
USP4-211ENST00000485450 HNRNPMP52272 730 aaKnown RBP eCLIP11.4□□□□□ -0.58
USP4-211ENST00000485450 ERVK-7P63135 1459 aa11.4□□□□□ -0.58
USP4-211ENST00000485450 PLA2R1Q13018 1463 aa11.4□□□□□ -0.58
USP4-211ENST00000485450 CEP170BQ9Y4F5 1589 aaPredicted RBP11.4□□□□□ -0.58
USP4-211ENST00000485450 NLRP1Q9C000 1473 aa11.39□□□□□ -0.59
USP4-211ENST00000485450 ARHGAP23Q9P227 1491 aa11.39□□□□□ -0.59
USP4-211ENST00000485450 ANKRD50Q9ULJ7 1429 aa11.39□□□□□ -0.59
USP4-211ENST00000485450 ADGRB3O60242 1522 aa11.38□□□□□ -0.59
USP4-211ENST00000485450 ANO8Q9HCE9 1232 aaPredicted RBP11.38□□□□□ -0.59
USP4-211ENST00000485450 DAXXQ9UER7 740 aaPredicted RBP11.37□□□□□ -0.59
USP4-211ENST00000485450 MED14O60244 1454 aa11.37□□□□□ -0.59
USP4-211ENST00000485450 PPLO60437 1756 aa11.36□□□□□ -0.59
USP4-211ENST00000485450 PRAG1Q86YV5 1406 aa11.36□□□□□ -0.59
USP4-211ENST00000485450 MYO5BQ9ULV0 1848 aa11.36□□□□□ -0.59
USP4-211ENST00000485450 A2ML1A8K2U0 1454 aa11.35□□□□□ -0.59
USP4-211ENST00000485450 CLTCL1P53675 1640 aa11.35□□□□□ -0.59
USP4-211ENST00000485450 KIF1BO60333 1816 aa11.33□□□□□ -0.6
USP4-211ENST00000485450 PLPPR3Q6T4P5 718 aa11.33□□□□□ -0.6
USP4-211ENST00000485450 NWD1Q149M9 1564 aa11.33□□□□□ -0.6
USP4-211ENST00000485450 NRXN3Q9Y4C0 1643 aa11.33□□□□□ -0.6
USP4-211ENST00000485450 ATP1B4Q9UN42 357 aaPredicted RBP11.32□□□□□ -0.6
USP4-211ENST00000485450 DIP2AQ14689 1571 aa11.32□□□□□ -0.6
USP4-211ENST00000485450 DIEXFQ68CQ4 756 aaKnown RBP11.31□□□□□ -0.6
USP4-211ENST00000485450 KIAA1210Q9ULL0 1709 aa11.31□□□□□ -0.6
USP4-211ENST00000485450 NRXN1Q9ULB1 1477 aa11.3□□□□□ -0.6
USP4-211ENST00000485450 KNDC1Q76NI1 1749 aa11.3□□□□□ -0.6
USP4-211ENST00000485450 SETBP1Q9Y6X0 1596 aa11.3□□□□□ -0.6
USP4-211ENST00000485450 ZMYM3Q14202 1370 aa11.29□□□□□ -0.6
USP4-211ENST00000485450 IQGAP1P46940 1657 aa11.28□□□□□ -0.6
USP4-211ENST00000485450 LAMC1P11047 1609 aa11.28□□□□□ -0.6
USP4-211ENST00000485450 TSPY4P0CV99 314 aa11.28□□□□□ -0.6
USP4-211ENST00000485450 TSPY10P0CW01 314 aa11.28□□□□□ -0.6
USP4-211ENST00000485450 NEXMIFQ5QGS0 1516 aa11.28□□□□□ -0.6
USP4-211ENST00000485450 ZFYVE9O95405 1425 aa11.28□□□□□ -0.6
USP4-211ENST00000485450 SETD5Q9C0A6 1442 aa11.28□□□□□ -0.6
USP4-211ENST00000485450 RTN4Q9NQC3 1192 aaKnown RBP11.26□□□□□ -0.61
USP4-211ENST00000485450 TSHZ2Q9NRE2 1034 aa11.26□□□□□ -0.61
USP4-211ENST00000485450 IQSEC2Q5JU85 1478 aa11.25□□□□□ -0.61
USP4-211ENST00000485450 UBE2Q2Q8WVN8 375 aa11.25□□□□□ -0.61
USP4-211ENST00000485450 XRN1Q8IZH2 1706 aaKnown RBP11.25□□□□□ -0.61
USP4-211ENST00000485450 XIRP1Q702N8 1843 aaKnown RBP11.25□□□□□ -0.61
USP4-211ENST00000485450 CHD2O14647 1828 aaKnown RBP11.24□□□□□ -0.61
USP4-211ENST00000485450 STRCP1A6NGW2 1772 aa11.24□□□□□ -0.61
USP4-211ENST00000485450 MYOM2P54296 1465 aa11.22□□□□□ -0.61
USP4-211ENST00000485450 SPATA31E1Q6ZUB1 1445 aa11.22□□□□□ -0.61
USP4-211ENST00000485450 ZNF777Q9ULD5 760 aaPredicted RBP11.22□□□□□ -0.61
USP4-211ENST00000485450 LTBP4Q8N2S1 1624 aa11.21□□□□□ -0.61
USP4-211ENST00000485450 KANK1Q14678 1352 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms