RNA–Protein interactions for RNA: ENST00000484799.1

SMC4-215, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-215ENST00000484799 GOLGA8CPA6NN73 597 aa11.12□□□□□ -0.63
SMC4-215ENST00000484799 PDIA6Q15084 440 aa11.12□□□□□ -0.63
SMC4-215ENST00000484799 NBR1Q14596 966 aa11.11□□□□□ -0.63
SMC4-215ENST00000484799 P3H3Q8IVL6 736 aa11.1□□□□□ -0.63
SMC4-215ENST00000484799 MAP3K7O43318 606 aa11.09□□□□□ -0.63
SMC4-215ENST00000484799 ARIH1Q9Y4X5 557 aaPredicted RBP11.09□□□□□ -0.63
SMC4-215ENST00000484799 ARHGEF1Q92888 912 aaKnown RBP11.08□□□□□ -0.64
SMC4-215ENST00000484799 VPS9D1Q9Y2B5 631 aa11.08□□□□□ -0.64
SMC4-215ENST00000484799 C6orf132Q5T0Z8 1188 aa11.07□□□□□ -0.64
SMC4-215ENST00000484799 PPP1R3GB7ZBB8 358 aa11.06□□□□□ -0.64
SMC4-215ENST00000484799 SLC4A5Q9BY07 1137 aa11.06□□□□□ -0.64
SMC4-215ENST00000484799 MRPL50Q8N5N7 158 aaKnown RBP11.05□□□□□ -0.64
SMC4-215ENST00000484799 NBPF3Q9H094 633 aa11.05□□□□□ -0.64
SMC4-215ENST00000484799 ZBED2Q9BTP6 218 aa11.04□□□□□ -0.64
SMC4-215ENST00000484799 HRO43593 1189 aa11.01□□□□□ -0.65
SMC4-215ENST00000484799 KCNV2Q8TDN2 545 aa11.01□□□□□ -0.65
SMC4-215ENST00000484799 KCTD12Q96CX2 325 aaKnown RBP11.01□□□□□ -0.65
SMC4-215ENST00000484799 COL9A1P20849 921 aa11□□□□□ -0.65
SMC4-215ENST00000484799 EN1Q05925 392 aaPredicted RBP11□□□□□ -0.65
SMC4-215ENST00000484799 HCSTQ9UBK5 93 aa11□□□□□ -0.65
SMC4-215ENST00000484799 PACS2Q86VP3 889 aa10.98□□□□□ -0.65
SMC4-215ENST00000484799 RABGEF1Q9UJ41 708 aa10.98□□□□□ -0.65
SMC4-215ENST00000484799 PROX2Q3B8N5 592 aa10.97□□□□□ -0.65
SMC4-215ENST00000484799 CERKQ8TCT0 537 aa10.97□□□□□ -0.65
SMC4-215ENST00000484799 KIAA1468Q9P260 1216 aa10.97□□□□□ -0.65
SMC4-215ENST00000484799 ONECUT3O60422 494 aaPredicted RBP10.95□□□□□ -0.66
SMC4-215ENST00000484799 TSR1Q2NL82 804 aaKnown RBP10.95□□□□□ -0.66
SMC4-215ENST00000484799 WNT2BQ93097 391 aa10.95□□□□□ -0.66
SMC4-215ENST00000484799 VSIG10Q8N0Z9 540 aa10.94□□□□□ -0.66
SMC4-215ENST00000484799 TRIM6-TRIM34B2RNG4 842 aa10.93□□□□□ -0.66
SMC4-215ENST00000484799 BHMG1C9JSJ3 638 aaPredicted RBP10.93□□□□□ -0.66
SMC4-215ENST00000484799 OSBPP22059 807 aa10.93□□□□□ -0.66
SMC4-215ENST00000484799 PTPN5P54829 565 aa10.93□□□□□ -0.66
SMC4-215ENST00000484799 SMYD5Q6GMV2 418 aa10.93□□□□□ -0.66
SMC4-215ENST00000484799 ANKK1Q8NFD2 765 aa10.91□□□□□ -0.66
SMC4-215ENST00000484799 HDGFP51858 240 aaKnown RBP10.9□□□□□ -0.66
SMC4-215ENST00000484799 PRSS12P56730 875 aa10.9□□□□□ -0.66
SMC4-215ENST00000484799 LAPTM4BQ86VI4 370 aa10.9□□□□□ -0.66
SMC4-215ENST00000484799 MLLT3P42568 568 aaPredicted RBP10.89□□□□□ -0.67
SMC4-215ENST00000484799 CDCA7LQ96GN5 454 aa10.89□□□□□ -0.67
SMC4-215ENST00000484799 NUTM2FA1L443 756 aa10.88□□□□□ -0.67
SMC4-215ENST00000484799 SEMA3EO15041 775 aa10.87□□□□□ -0.67
SMC4-215ENST00000484799 SEPT9Q9UHD8 586 aaPredicted RBP10.87□□□□□ -0.67
SMC4-215ENST00000484799 TULP1O00294 542 aaPredicted RBP10.85□□□□□ -0.67
SMC4-215ENST00000484799 KDM2AQ9Y2K7 1162 aa10.85□□□□□ -0.67
SMC4-215ENST00000484799 NBPF26B4DH59 902 aa10.84□□□□□ -0.67
SMC4-215ENST00000484799 FAM98CQ17RN3 349 aaKnown RBP10.84□□□□□ -0.67
SMC4-215ENST00000484799 THSD4Q6ZMP0 1018 aa10.84□□□□□ -0.67
SMC4-215ENST00000484799 ZFRQ96KR1 1074 aaKnown RBP10.84□□□□□ -0.67
SMC4-215ENST00000484799 PRIM1P49642 420 aaKnown RBP10.83□□□□□ -0.68
SMC4-215ENST00000484799 CDHR5Q9HBB8 845 aa10.83□□□□□ -0.68
SMC4-215ENST00000484799 TSKSQ9UJT2 592 aa10.83□□□□□ -0.68
SMC4-215ENST00000484799 PNMA3Q9UL41 463 aa10.83□□□□□ -0.68
SMC4-215ENST00000484799 TATDN2Q93075 761 aa10.81□□□□□ -0.68
SMC4-215ENST00000484799 LRCH3Q96II8 777 aa10.81□□□□□ -0.68
SMC4-215ENST00000484799 SLC4A3P48751 1232 aa10.8□□□□□ -0.68
SMC4-215ENST00000484799 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.8□□□□□ -0.68
SMC4-215ENST00000484799 SMAPO00193 183 aa10.79□□□□□ -0.68
SMC4-215ENST00000484799 PLA2G2EQ9NZK7 142 aa10.79□□□□□ -0.68
SMC4-215ENST00000484799 RBM27Q9P2N5 1060 aaKnown RBP10.79□□□□□ -0.68
SMC4-215ENST00000484799 SOWAHBA6NEL2 793 aa10.78□□□□□ -0.68
SMC4-215ENST00000484799 NUDT18Q6ZVK8 323 aa10.78□□□□□ -0.68
SMC4-215ENST00000484799 BCAMP50895 628 aa10.77□□□□□ -0.69
SMC4-215ENST00000484799 PADI6Q6TGC4 694 aa10.77□□□□□ -0.69
SMC4-215ENST00000484799 FCHSD2O94868 740 aa10.76□□□□□ -0.69
SMC4-215ENST00000484799 PPP4CP60510 307 aa10.76□□□□□ -0.69
SMC4-215ENST00000484799 TESPA1A2RU30 521 aaPredicted RBP10.75□□□□□ -0.69
SMC4-215ENST00000484799 NPDC1Q9NQX5 325 aaPredicted RBP10.75□□□□□ -0.69
SMC4-215ENST00000484799 RNF40O75150 1001 aa10.74□□□□□ -0.69
SMC4-215ENST00000484799 NYAP1Q6ZVC0 841 aa10.74□□□□□ -0.69
SMC4-215ENST00000484799 TSR3Q9UJK0 312 aaKnown RBP10.74□□□□□ -0.69
SMC4-215ENST00000484799 PTGDRQ13258 359 aa10.73□□□□□ -0.69
SMC4-215ENST00000484799 HPS5Q9UPZ3 1129 aa10.73□□□□□ -0.69
SMC4-215ENST00000484799 SAMD7Q7Z3H4 446 aa10.72□□□□□ -0.69
SMC4-215ENST00000484799 RBM46Q8TBY0 533 aaKnown RBP10.72□□□□□ -0.69
SMC4-215ENST00000484799 FAM198AQ9UFP1 575 aa10.72□□□□□ -0.69
SMC4-215ENST00000484799 RBM26Q5T8P6 1007 aaKnown RBP10.71□□□□□ -0.69
SMC4-215ENST00000484799 NECTIN2Q92692 538 aa10.7□□□□□ -0.7
SMC4-215ENST00000484799 WBP1LQ9NX94 342 aa10.69□□□□□ -0.7
SMC4-215ENST00000484799 HIC1Q14526 733 aa10.67□□□□□ -0.7
SMC4-215ENST00000484799 SLF2Q8IX21 1173 aa10.67□□□□□ -0.7
SMC4-215ENST00000484799 TTC13Q8NBP0 860 aa10.66□□□□□ -0.7
SMC4-215ENST00000484799 OATP04181 439 aa10.65□□□□□ -0.7
SMC4-215ENST00000484799 GPIHBP1Q8IV16 184 aa10.65□□□□□ -0.7
SMC4-215ENST00000484799 C3orf80F5H4A9 247 aa10.63□□□□□ -0.71
SMC4-215ENST00000484799 DNAJB2P25686 324 aa10.63□□□□□ -0.71
SMC4-215ENST00000484799 SWT1Q5T5J6 900 aaKnown RBP10.63□□□□□ -0.71
SMC4-215ENST00000484799 GNPATO15228 680 aa10.62□□□□□ -0.71
SMC4-215ENST00000484799 EYA1Q99502 592 aa10.62□□□□□ -0.71
SMC4-215ENST00000484799 RSPH4AQ5TD94 716 aa10.61□□□□□ -0.71
SMC4-215ENST00000484799 ADGRG1Q9Y653 693 aa10.61□□□□□ -0.71
SMC4-215ENST00000484799 KCNC4Q03721 635 aa10.6□□□□□ -0.71
SMC4-215ENST00000484799 FAM161AQ3B820 660 aa10.6□□□□□ -0.71
SMC4-215ENST00000484799 RCCD1A6NED2 376 aa10.58□□□□□ -0.72
SMC4-215ENST00000484799 PRR14Q9BWN1 585 aa10.58□□□□□ -0.72
SMC4-215ENST00000484799 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.57□□□□□ -0.72
SMC4-215ENST00000484799 IFFO2Q5TF58 517 aa10.54□□□□□ -0.72
SMC4-215ENST00000484799 KMT5BQ4FZB7 885 aa10.53□□□□□ -0.72
SMC4-215ENST00000484799 TMEM134Q9H6X4 195 aa10.53□□□□□ -0.72
SMC4-215ENST00000484799 PXYLP1Q8TE99 480 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms