RNA–Protein interactions for RNA: ENST00000482096.1

UBE2F-222, Transcript of ubiquitin conjugating enzyme E2 F (putative), human

TSL 4

Gene UBE2F, Length 580 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2F-222	ENST00000482096	CDC42BPA	Q5VT25	1732 aa		13.94	□□□□□ -0.18
UBE2F-222	ENST00000482096	SAMD9L	Q8IVG5	1584 aa		13.94	□□□□□ -0.18
UBE2F-222	ENST00000482096	C3	P01024	1663 aa		13.94	□□□□□ -0.18
UBE2F-222	ENST00000482096	KIAA1107	Q9UPP5	1409 aa		13.92	□□□□□ -0.18
UBE2F-222	ENST00000482096	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.92	□□□□□ -0.18
UBE2F-222	ENST00000482096	SYCP2	Q9BX26	1530 aa		13.91	□□□□□ -0.18
UBE2F-222	ENST00000482096	AKT1S1	Q96B36	256 aa		13.91	□□□□□ -0.18
UBE2F-222	ENST00000482096	ZMYM3	Q14202	1370 aa		13.91	□□□□□ -0.18
UBE2F-222	ENST00000482096	NPAT	Q14207	1427 aa		13.9	□□□□□ -0.18
UBE2F-222	ENST00000482096	PLEKHH2	Q8IVE3	1493 aa		13.9	□□□□□ -0.18
UBE2F-222	ENST00000482096	CCNB3	Q8WWL7	1395 aa		13.89	□□□□□ -0.19
UBE2F-222	ENST00000482096	NCOA1	Q15788	1441 aa		13.89	□□□□□ -0.19
UBE2F-222	ENST00000482096	MTUS2	Q5JR59	1369 aa		13.88	□□□□□ -0.19
UBE2F-222	ENST00000482096	ATP7A	Q04656	1500 aa		13.87	□□□□□ -0.19
UBE2F-222	ENST00000482096	A2M	P01023	1474 aa		13.87	□□□□□ -0.19
UBE2F-222	ENST00000482096	MROH2A	A6NES4	1674 aa		13.85	□□□□□ -0.19
UBE2F-222	ENST00000482096	GGT6	Q6P531	493 aa		13.85	□□□□□ -0.19
UBE2F-222	ENST00000482096	FBXO3	Q9UK99	471 aa		13.85	□□□□□ -0.19
UBE2F-222	ENST00000482096	LTBP4	Q8N2S1	1624 aa		13.85	□□□□□ -0.19
UBE2F-222	ENST00000482096	PLXNC1	O60486	1568 aa		13.84	□□□□□ -0.19
UBE2F-222	ENST00000482096	INO80	Q9ULG1	1556 aa	Predicted RBP	13.84	□□□□□ -0.19
UBE2F-222	ENST00000482096	ZNF644	Q9H582	1327 aa	Predicted RBP	13.84	□□□□□ -0.19
UBE2F-222	ENST00000482096	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.83	□□□□□ -0.2
UBE2F-222	ENST00000482096	CAMSAP1	Q5T5Y3	1602 aa		13.82	□□□□□ -0.2
UBE2F-222	ENST00000482096	PTPRK	Q15262	1439 aa		13.82	□□□□□ -0.2
UBE2F-222	ENST00000482096	IQSEC2	Q5JU85	1478 aa		13.82	□□□□□ -0.2
UBE2F-222	ENST00000482096	MBD5	Q9P267	1494 aa		13.82	□□□□□ -0.2
UBE2F-222	ENST00000482096	NCKAP5L	Q9HCH0	1330 aa		13.82	□□□□□ -0.2
UBE2F-222	ENST00000482096	PKD2	Q13563	968 aa		13.81	□□□□□ -0.2
UBE2F-222	ENST00000482096	REM2	Q8IYK8	340 aa	Predicted RBP	13.81	□□□□□ -0.2
UBE2F-222	ENST00000482096	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.81	□□□□□ -0.2
UBE2F-222	ENST00000482096	DISP3	Q9P2K9	1392 aa		13.8	□□□□□ -0.2
UBE2F-222	ENST00000482096	CEP162	Q5TB80	1403 aa		13.8	□□□□□ -0.2
UBE2F-222	ENST00000482096	PLA2R1	Q13018	1463 aa		13.8	□□□□□ -0.2
UBE2F-222	ENST00000482096	EHBP1L1	Q8N3D4	1523 aa		13.8	□□□□□ -0.2
UBE2F-222	ENST00000482096	TIAM1	Q13009	1591 aa		13.79	□□□□□ -0.2
UBE2F-222	ENST00000482096	DHX29	Q7Z478	1369 aa	Known RBP	13.79	□□□□□ -0.2
UBE2F-222	ENST00000482096	CLTC	Q00610	1675 aa	Known RBP	13.79	□□□□□ -0.2
UBE2F-222	ENST00000482096	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.78	□□□□□ -0.2
UBE2F-222	ENST00000482096	TCOF1	Q13428	1488 aa	Known RBP	13.77	□□□□□ -0.21
UBE2F-222	ENST00000482096	ILDR2	Q71H61	639 aa		13.77	□□□□□ -0.21
UBE2F-222	ENST00000482096	ADGB	Q8N7X0	1667 aa		13.76	□□□□□ -0.21
UBE2F-222	ENST00000482096	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.76	□□□□□ -0.21
UBE2F-222	ENST00000482096	RSPH4A	Q5TD94	716 aa		13.76	□□□□□ -0.21
UBE2F-222	ENST00000482096	ZNF142	P52746	1687 aa	Predicted RBP	13.75	□□□□□ -0.21
UBE2F-222	ENST00000482096	MYO3A	Q8NEV4	1616 aa		13.75	□□□□□ -0.21
UBE2F-222	ENST00000482096	KIF3B	O15066	747 aa		13.74	□□□□□ -0.21
UBE2F-222	ENST00000482096	A2ML1	A8K2U0	1454 aa		13.74	□□□□□ -0.21
UBE2F-222	ENST00000482096	CCDC141	Q6ZP82	1450 aa		13.74	□□□□□ -0.21
UBE2F-222	ENST00000482096	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.73	□□□□□ -0.21
UBE2F-222	ENST00000482096	NCOA2	Q15596	1464 aa		13.73	□□□□□ -0.21
UBE2F-222	ENST00000482096	VASP	P50552	380 aa	Predicted RBP	13.72	□□□□□ -0.21
UBE2F-222	ENST00000482096	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.72	□□□□□ -0.21
UBE2F-222	ENST00000482096	STAG3	Q9UJ98	1225 aa		13.72	□□□□□ -0.21
UBE2F-222	ENST00000482096	CLEC11A	Q9Y240	323 aa		13.72	□□□□□ -0.21
UBE2F-222	ENST00000482096	UBAP1L	F5GYI3	381 aa		13.71	□□□□□ -0.21
UBE2F-222	ENST00000482096	SOCS7	O14512	581 aa		13.71	□□□□□ -0.21
UBE2F-222	ENST00000482096	CAMSAP2	Q08AD1	1489 aa		13.71	□□□□□ -0.21
UBE2F-222	ENST00000482096	TNR	Q92752	1358 aa		13.71	□□□□□ -0.22
UBE2F-222	ENST00000482096	WASHC2C	Q9Y4E1	1318 aa		13.7	□□□□□ -0.22
UBE2F-222	ENST00000482096	DNMT1	P26358	1616 aa	Known RBP	13.7	□□□□□ -0.22
UBE2F-222	ENST00000482096	FAM135A	Q9P2D6	1515 aa		13.69	□□□□□ -0.22
UBE2F-222	ENST00000482096	PZP	P20742	1482 aa		13.69	□□□□□ -0.22
UBE2F-222	ENST00000482096	TSPY4	P0CV99	314 aa		13.69	□□□□□ -0.22
UBE2F-222	ENST00000482096	TSPY10	P0CW01	314 aa		13.69	□□□□□ -0.22
UBE2F-222	ENST00000482096	PITPNM1	O00562	1244 aa		13.68	□□□□□ -0.22
UBE2F-222	ENST00000482096	KDM5D	Q9BY66	1539 aa		13.68	□□□□□ -0.22
UBE2F-222	ENST00000482096	SPATA31D1	Q6ZQQ2	1576 aa		13.67	□□□□□ -0.22
UBE2F-222	ENST00000482096	MIA2	Q96PC5	1412 aa		13.67	□□□□□ -0.22
UBE2F-222	ENST00000482096	ANKLE2	Q86XL3	938 aa		13.66	□□□□□ -0.22
UBE2F-222	ENST00000482096	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.66	□□□□□ -0.22
UBE2F-222	ENST00000482096	ARHGEF5	Q12774	1597 aa		13.66	□□□□□ -0.22
UBE2F-222	ENST00000482096	LRRC9	Q6ZRR7	1453 aa		13.64	□□□□□ -0.23
UBE2F-222	ENST00000482096	NLRP1	Q9C000	1473 aa		13.64	□□□□□ -0.23
UBE2F-222	ENST00000482096	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
UBE2F-222	ENST00000482096	NEURL4	Q96JN8	1562 aa		13.63	□□□□□ -0.23
UBE2F-222	ENST00000482096	VPS8	Q8N3P4	1428 aa		13.63	□□□□□ -0.23
UBE2F-222	ENST00000482096	SHANK2	Q9UPX8	1470 aa		13.62	□□□□□ -0.23
UBE2F-222	ENST00000482096	CPS1	P31327	1500 aa		13.62	□□□□□ -0.23
UBE2F-222	ENST00000482096	TOM1	O60784	492 aa		13.61	□□□□□ -0.23
UBE2F-222	ENST00000482096	KANK4	Q5T7N3	995 aa	Predicted RBP	13.61	□□□□□ -0.23
UBE2F-222	ENST00000482096	UGGT1	Q9NYU2	1555 aa		13.61	□□□□□ -0.23
UBE2F-222	ENST00000482096	MED14	O60244	1454 aa		13.61	□□□□□ -0.23
UBE2F-222	ENST00000482096	LOC105371045	A0A1W2PR82	267 aa		13.6	□□□□□ -0.23
UBE2F-222	ENST00000482096	POLR1A	O95602	1720 aa	Predicted RBP	13.59	□□□□□ -0.23
UBE2F-222	ENST00000482096	MAST1	Q9Y2H9	1570 aa		13.59	□□□□□ -0.23
UBE2F-222	ENST00000482096	NPHP4	O75161	1426 aa	Predicted RBP	13.59	□□□□□ -0.23
UBE2F-222	ENST00000482096	ABCC3	O15438	1527 aa		13.59	□□□□□ -0.23
UBE2F-222	ENST00000482096	MAP3K1	Q13233	1512 aa		13.59	□□□□□ -0.23
UBE2F-222	ENST00000482096	PRR29	P0C7W0	189 aa		13.58	□□□□□ -0.24
UBE2F-222	ENST00000482096	HSPA1L	P34931	641 aa		13.58	□□□□□ -0.24
UBE2F-222	ENST00000482096	PIP4K2B	P78356	416 aa		13.58	□□□□□ -0.24
UBE2F-222	ENST00000482096	VWDE	Q8N2E2	1590 aa		13.58	□□□□□ -0.24
UBE2F-222	ENST00000482096	RNF17	Q9BXT8	1623 aa	Known RBP	13.57	□□□□□ -0.24
UBE2F-222	ENST00000482096	MYOM3	Q5VTT5	1437 aa		13.57	□□□□□ -0.24
UBE2F-222	ENST00000482096	PLCD3	Q8N3E9	789 aa		13.57	□□□□□ -0.24
UBE2F-222	ENST00000482096	DEPDC5	O75140	1603 aa		13.57	□□□□□ -0.24
UBE2F-222	ENST00000482096	MIER1	Q8N108	512 aa		13.56	□□□□□ -0.24
UBE2F-222	ENST00000482096	ERVK-7	P63135	1459 aa		13.55	□□□□□ -0.24
UBE2F-222	ENST00000482096	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms