RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 CTTNBP2Q8WZ74 1663 aa18.93■□□□□ 0.62
HDAC6-220ENST00000477528 GOLGA2Q08379 1002 aa18.93■□□□□ 0.62
HDAC6-220ENST00000477528 STK26Q9P289 416 aa18.92■□□□□ 0.62
HDAC6-220ENST00000477528 ANKRD30BQ9BXX2 1392 aa18.91■□□□□ 0.62
HDAC6-220ENST00000477528 ZNF608Q9ULD9 1512 aaPredicted RBP18.91■□□□□ 0.62
HDAC6-220ENST00000477528 TCERG1O14776 1098 aaKnown RBP18.91■□□□□ 0.62
HDAC6-220ENST00000477528 PLEKHH2Q8IVE3 1493 aa18.91■□□□□ 0.62
HDAC6-220ENST00000477528 CFAP43Q8NDM7 1665 aa18.91■□□□□ 0.62
HDAC6-220ENST00000477528 CAMSAP2Q08AD1 1489 aa18.91■□□□□ 0.62
HDAC6-220ENST00000477528 PLB1Q6P1J6 1458 aa18.91■□□□□ 0.62
HDAC6-220ENST00000477528 AKNAQ7Z591 1439 aa18.9■□□□□ 0.62
HDAC6-220ENST00000477528 HDGFP51858 240 aaKnown RBP18.9■□□□□ 0.62
HDAC6-220ENST00000477528 UGGT2Q9NYU1 1516 aa18.88■□□□□ 0.61
HDAC6-220ENST00000477528 HDGFL2Q7Z4V5 671 aaPredicted RBP18.88■□□□□ 0.61
HDAC6-220ENST00000477528 LAS1LQ9Y4W2 734 aaKnown RBP18.87■□□□□ 0.61
HDAC6-220ENST00000477528 PTPRKQ15262 1439 aa18.87■□□□□ 0.61
HDAC6-220ENST00000477528 MLECQ14165 292 aa18.87■□□□□ 0.61
HDAC6-220ENST00000477528 TRAK1Q9UPV9 953 aa18.86■□□□□ 0.61
HDAC6-220ENST00000477528 BRD4O60885 1362 aaPredicted RBP18.86■□□□□ 0.61
HDAC6-220ENST00000477528 U2AF1L5P0DN76 240 aaPredicted RBP18.85■□□□□ 0.61
HDAC6-220ENST00000477528 U2AF1Q01081 240 aaKnown RBP eCLIP18.85■□□□□ 0.61
HDAC6-220ENST00000477528 RRP1P56182 461 aaKnown RBP18.84■□□□□ 0.61
HDAC6-220ENST00000477528 CHMP4BQ9H444 224 aaKnown RBP18.84■□□□□ 0.61
HDAC6-220ENST00000477528 CCDC146Q8IYE0 955 aa18.84■□□□□ 0.61
HDAC6-220ENST00000477528 ARHGEF11O15085 1522 aa18.83■□□□□ 0.6
HDAC6-220ENST00000477528 NCOA1Q15788 1441 aa18.83■□□□□ 0.6
HDAC6-220ENST00000477528 OSCARQ8IYS5 282 aa18.83■□□□□ 0.6
HDAC6-220ENST00000477528 AFAP1Q8N556 730 aa18.83■□□□□ 0.6
HDAC6-220ENST00000477528 TERF2IPQ9NYB0 399 aa18.81■□□□□ 0.6
HDAC6-220ENST00000477528 VGFO15240 615 aaPredicted RBP18.8■□□□□ 0.6
HDAC6-220ENST00000477528 RPRD2Q5VT52 1461 aaKnown RBP18.8■□□□□ 0.6
HDAC6-220ENST00000477528 CCDC141Q6ZP82 1450 aa18.8■□□□□ 0.6
HDAC6-220ENST00000477528 KIF14Q15058 1648 aa18.8■□□□□ 0.6
HDAC6-220ENST00000477528 NUTM2DQ5VT03 806 aaPredicted RBP18.8■□□□□ 0.6
HDAC6-220ENST00000477528 C14orf37Q86TY3 774 aa18.8■□□□□ 0.6
HDAC6-220ENST00000477528 NBPF1Q3BBV0 1214 aa18.78■□□□□ 0.6
HDAC6-220ENST00000477528 TCOF1Q13428 1488 aaKnown RBP18.76■□□□□ 0.59
HDAC6-220ENST00000477528 ADAMTS12P58397 1594 aa18.76■□□□□ 0.59
HDAC6-220ENST00000477528 EXOC6Q8TAG9 804 aa18.76■□□□□ 0.59
HDAC6-220ENST00000477528 RAPGEF6Q8TEU7 1601 aa18.75■□□□□ 0.59
HDAC6-220ENST00000477528 ANP32BQ92688 251 aaKnown RBP18.75■□□□□ 0.59
HDAC6-220ENST00000477528 CENPJQ9HC77 1338 aaPredicted RBP18.75■□□□□ 0.59
HDAC6-220ENST00000477528 CCDC184Q52MB2 194 aa18.75■□□□□ 0.59
HDAC6-220ENST00000477528 EVC2Q86UK5 1308 aa18.75■□□□□ 0.59
HDAC6-220ENST00000477528 C11orf95C9JLR9 678 aaPredicted RBP18.74■□□□□ 0.59
HDAC6-220ENST00000477528 GPATCH8Q9UKJ3 1502 aaKnown RBP18.74■□□□□ 0.59
HDAC6-220ENST00000477528 EIF5BO60841 1220 aaKnown RBP18.74■□□□□ 0.59
HDAC6-220ENST00000477528 CGNL1Q0VF96 1302 aa18.74■□□□□ 0.59
HDAC6-220ENST00000477528 NUP153P49790 1475 aaKnown RBP18.73■□□□□ 0.59
HDAC6-220ENST00000477528 IPO8O15397 1037 aaKnown RBP18.73■□□□□ 0.59
HDAC6-220ENST00000477528 NGEFQ8N5V2 710 aa18.73■□□□□ 0.59
HDAC6-220ENST00000477528 IPO9Q96P70 1041 aaKnown RBP18.72■□□□□ 0.59
HDAC6-220ENST00000477528 E9PSI1 815 aa18.72■□□□□ 0.59
HDAC6-220ENST00000477528 PNISRQ8TF01 805 aaKnown RBP18.72■□□□□ 0.59
HDAC6-220ENST00000477528 ZBTB7CA1YPR0 619 aa18.71■□□□□ 0.59
HDAC6-220ENST00000477528 PLIN1O60240 522 aa18.71■□□□□ 0.59
HDAC6-220ENST00000477528 CALD1Q05682 793 aaKnown RBP18.71■□□□□ 0.59
HDAC6-220ENST00000477528 FANCIQ9NVI1 1328 aa18.7■□□□□ 0.58
HDAC6-220ENST00000477528 RWDD1Q9H446 243 aaPredicted RBP18.7■□□□□ 0.58
HDAC6-220ENST00000477528 WDR62O43379 1518 aa18.7■□□□□ 0.58
HDAC6-220ENST00000477528 ABCA5Q8WWZ7 1642 aa18.69■□□□□ 0.58
HDAC6-220ENST00000477528 APAF1O14727 1248 aa18.69■□□□□ 0.58
HDAC6-220ENST00000477528 PMFBP1Q8TBY8 1022 aa18.69■□□□□ 0.58
HDAC6-220ENST00000477528 HAP1P54257 671 aaPredicted RBP18.68■□□□□ 0.58
HDAC6-220ENST00000477528 KIF21AQ7Z4S6 1674 aa18.68■□□□□ 0.58
HDAC6-220ENST00000477528 CRBNQ96SW2 442 aa18.68■□□□□ 0.58
HDAC6-220ENST00000477528 KIAA0556O60303 1618 aa18.68■□□□□ 0.58
HDAC6-220ENST00000477528 CENPQQ7L2Z9 268 aaPredicted RBP18.67■□□□□ 0.58
HDAC6-220ENST00000477528 CFAP70Q5T0N1 1121 aa18.66■□□□□ 0.58
HDAC6-220ENST00000477528 ERBINQ96RT1 1412 aa18.66■□□□□ 0.58
HDAC6-220ENST00000477528 CASC1Q6TDU7 716 aa18.66■□□□□ 0.58
HDAC6-220ENST00000477528 RRP7AQ9Y3A4 280 aaKnown RBP18.65■□□□□ 0.58
HDAC6-220ENST00000477528 SCAPERQ9BY12 1400 aa18.65■□□□□ 0.58
HDAC6-220ENST00000477528 SAMD9Q5K651 1589 aa18.65■□□□□ 0.58
HDAC6-220ENST00000477528 SMC4Q9NTJ3 1288 aa18.65■□□□□ 0.58
HDAC6-220ENST00000477528 SMG6Q86US8 1419 aaKnown RBP18.64■□□□□ 0.57
HDAC6-220ENST00000477528 ADAMTS8Q9UP79 889 aa18.64■□□□□ 0.57
HDAC6-220ENST00000477528 ITSN2Q9NZM3 1697 aa18.64■□□□□ 0.57
HDAC6-220ENST00000477528 ITPRIPQ8IWB1 547 aa18.63■□□□□ 0.57
HDAC6-220ENST00000477528 PDE4AP27815 886 aa18.63■□□□□ 0.57
HDAC6-220ENST00000477528 PPP2R1AP30153 589 aa18.63■□□□□ 0.57
HDAC6-220ENST00000477528 ARXQ96QS3 562 aa18.63■□□□□ 0.57
HDAC6-220ENST00000477528 PLEKHG5O94827 1062 aa18.62■□□□□ 0.57
HDAC6-220ENST00000477528 ATP10BO94823 1461 aa18.61■□□□□ 0.57
HDAC6-220ENST00000477528 CYB5RLQ6IPT4 315 aa18.61■□□□□ 0.57
HDAC6-220ENST00000477528 SOX12O15370 315 aa18.61■□□□□ 0.57
HDAC6-220ENST00000477528 CLUAP1Q96AJ1 413 aa18.6■□□□□ 0.57
HDAC6-220ENST00000477528 GOLGA6L22H0YM25 854 aa18.6■□□□□ 0.57
HDAC6-220ENST00000477528 MINK1Q8N4C8 1332 aaPredicted RBP18.59■□□□□ 0.57
HDAC6-220ENST00000477528 DEKP35659 375 aaKnown RBP18.59■□□□□ 0.57
HDAC6-220ENST00000477528 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.58■□□□□ 0.57
HDAC6-220ENST00000477528 CDCA7LQ96GN5 454 aa18.58■□□□□ 0.56
HDAC6-220ENST00000477528 RUNDC1Q96C34 613 aa18.57■□□□□ 0.56
HDAC6-220ENST00000477528 PBRM1Q86U86 1689 aa18.57■□□□□ 0.56
HDAC6-220ENST00000477528 RTF1Q92541 710 aaKnown RBP18.57■□□□□ 0.56
HDAC6-220ENST00000477528 TMEM132EQ6IEE7 984 aa18.56■□□□□ 0.56
HDAC6-220ENST00000477528 LMOD3Q0VAK6 560 aa18.55■□□□□ 0.56
HDAC6-220ENST00000477528 DISP1Q96F81 1524 aa18.55■□□□□ 0.56
HDAC6-220ENST00000477528 FAM161AQ3B820 660 aa18.55■□□□□ 0.56
HDAC6-220ENST00000477528 HSCBQ8IWL3 235 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms