RNA–Protein interactions for RNA: ENST00000472318.1

SCAF4-205, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 3

Gene SCAF4, Length 796 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-205ENST00000472318 PTPREP23469 700 aa14.08□□□□□ -0.16
SCAF4-205ENST00000472318 PHF14O94880 888 aa14.07□□□□□ -0.16
SCAF4-205ENST00000472318 E2F4Q16254 413 aa14.07□□□□□ -0.16
SCAF4-205ENST00000472318 SCRIBQ14160 1630 aa14.07□□□□□ -0.16
SCAF4-205ENST00000472318 PDIA6Q15084 440 aa14.06□□□□□ -0.16
SCAF4-205ENST00000472318 SLC4A5Q9BY07 1137 aa14.06□□□□□ -0.16
SCAF4-205ENST00000472318 ERCC6Q03468 1493 aa14.06□□□□□ -0.16
SCAF4-205ENST00000472318 ARIH1Q9Y4X5 557 aaPredicted RBP14.05□□□□□ -0.16
SCAF4-205ENST00000472318 TYW1BQ6NUM6 668 aa14.04□□□□□ -0.16
SCAF4-205ENST00000472318 FBXW7Q969H0 707 aa14.04□□□□□ -0.16
SCAF4-205ENST00000472318 WDR70Q9NW82 654 aa14.04□□□□□ -0.16
SCAF4-205ENST00000472318 VPS9D1Q9Y2B5 631 aa14.04□□□□□ -0.16
SCAF4-205ENST00000472318 ZBED2Q9BTP6 218 aa14.01□□□□□ -0.17
SCAF4-205ENST00000472318 EPAS1Q99814 870 aa14□□□□□ -0.17
SCAF4-205ENST00000472318 TSHZ2Q9NRE2 1034 aa14□□□□□ -0.17
SCAF4-205ENST00000472318 SPDYE16A6NNV3 312 aaPredicted RBP13.99□□□□□ -0.17
SCAF4-205ENST00000472318 PPP1R3GB7ZBB8 358 aa13.99□□□□□ -0.17
SCAF4-205ENST00000472318 DDX12PQ92771 950 aa13.96□□□□□ -0.17
SCAF4-205ENST00000472318 BHMG1C9JSJ3 638 aaPredicted RBP13.94□□□□□ -0.18
SCAF4-205ENST00000472318 COL9A1P20849 921 aa13.93□□□□□ -0.18
SCAF4-205ENST00000472318 NBR1Q14596 966 aa13.9□□□□□ -0.18
SCAF4-205ENST00000472318 C6orf132Q5T0Z8 1188 aa13.9□□□□□ -0.18
SCAF4-205ENST00000472318 STAC3Q96MF2 364 aa13.9□□□□□ -0.18
SCAF4-205ENST00000472318 EN1Q05925 392 aaPredicted RBP13.89□□□□□ -0.19
SCAF4-205ENST00000472318 DCAF1Q9Y4B6 1507 aa13.88□□□□□ -0.19
SCAF4-205ENST00000472318 PLCB2Q00722 1185 aa13.87□□□□□ -0.19
SCAF4-205ENST00000472318 PROX2Q3B8N5 592 aa13.87□□□□□ -0.19
SCAF4-205ENST00000472318 RBM33Q96EV2 1170 aaKnown RBP13.87□□□□□ -0.19
SCAF4-205ENST00000472318 HCSTQ9UBK5 93 aa13.87□□□□□ -0.19
SCAF4-205ENST00000472318 NBPF3Q9H094 633 aa13.86□□□□□ -0.19
SCAF4-205ENST00000472318 ZCCHC6Q5VYS8 1495 aaKnown RBP13.86□□□□□ -0.19
SCAF4-205ENST00000472318 KCTD12Q96CX2 325 aaKnown RBP13.85□□□□□ -0.19
SCAF4-205ENST00000472318 RABGEF1Q9UJ41 708 aa13.85□□□□□ -0.19
SCAF4-205ENST00000472318 MRPL50Q8N5N7 158 aaKnown RBP13.83□□□□□ -0.2
SCAF4-205ENST00000472318 KCNV2Q8TDN2 545 aa13.83□□□□□ -0.2
SCAF4-205ENST00000472318 MAP3K7O43318 606 aa13.82□□□□□ -0.2
SCAF4-205ENST00000472318 TSR1Q2NL82 804 aaKnown RBP13.81□□□□□ -0.2
SCAF4-205ENST00000472318 ONECUT3O60422 494 aaPredicted RBP13.8□□□□□ -0.2
SCAF4-205ENST00000472318 PRIM1P49642 420 aaKnown RBP13.8□□□□□ -0.2
SCAF4-205ENST00000472318 ARHGEF1Q92888 912 aaKnown RBP13.8□□□□□ -0.2
SCAF4-205ENST00000472318 GRXCR2A6NFK2 248 aa13.79□□□□□ -0.2
SCAF4-205ENST00000472318 NESP48681 1621 aa13.79□□□□□ -0.2
SCAF4-205ENST00000472318 TRIM6-TRIM34B2RNG4 842 aa13.77□□□□□ -0.21
SCAF4-205ENST00000472318 OSBPP22059 807 aa13.77□□□□□ -0.21
SCAF4-205ENST00000472318 THSD4Q6ZMP0 1018 aa13.76□□□□□ -0.21
SCAF4-205ENST00000472318 GOLGA8CPA6NN73 597 aa13.75□□□□□ -0.21
SCAF4-205ENST00000472318 LAPTM4BQ86VI4 370 aa13.75□□□□□ -0.21
SCAF4-205ENST00000472318 WNT2BQ93097 391 aa13.75□□□□□ -0.21
SCAF4-205ENST00000472318 KIAA1468Q9P260 1216 aa13.75□□□□□ -0.21
SCAF4-205ENST00000472318 P3H3Q8IVL6 736 aa13.73□□□□□ -0.21
SCAF4-205ENST00000472318 NCAPD3P42695 1498 aa13.72□□□□□ -0.21
SCAF4-205ENST00000472318 THOC2Q8NI27 1593 aaKnown RBP13.71□□□□□ -0.21
SCAF4-205ENST00000472318 CERKQ8TCT0 537 aa13.71□□□□□ -0.21
SCAF4-205ENST00000472318 TSKSQ9UJT2 592 aa13.7□□□□□ -0.22
SCAF4-205ENST00000472318 PTPN5P54829 565 aa13.69□□□□□ -0.22
SCAF4-205ENST00000472318 ANKK1Q8NFD2 765 aa13.68□□□□□ -0.22
SCAF4-205ENST00000472318 CDHR5Q9HBB8 845 aa13.68□□□□□ -0.22
SCAF4-205ENST00000472318 SEPT9Q9UHD8 586 aaPredicted RBP13.68□□□□□ -0.22
SCAF4-205ENST00000472318 CDCA7LQ96GN5 454 aa13.67□□□□□ -0.22
SCAF4-205ENST00000472318 PLA2G2EQ9NZK7 142 aa13.67□□□□□ -0.22
SCAF4-205ENST00000472318 MLLT3P42568 568 aaPredicted RBP13.66□□□□□ -0.22
SCAF4-205ENST00000472318 PRSS12P56730 875 aa13.66□□□□□ -0.22
SCAF4-205ENST00000472318 FAM98CQ17RN3 349 aaKnown RBP13.66□□□□□ -0.22
SCAF4-205ENST00000472318 ZFRQ96KR1 1074 aaKnown RBP13.66□□□□□ -0.22
SCAF4-205ENST00000472318 PACS2Q86VP3 889 aa13.64□□□□□ -0.23
SCAF4-205ENST00000472318 RBM27Q9P2N5 1060 aaKnown RBP13.64□□□□□ -0.23
SCAF4-205ENST00000472318 FAM198AQ9UFP1 575 aa13.63□□□□□ -0.23
SCAF4-205ENST00000472318 SOWAHBA6NEL2 793 aa13.62□□□□□ -0.23
SCAF4-205ENST00000472318 BCAMP50895 628 aa13.6□□□□□ -0.23
SCAF4-205ENST00000472318 NPDC1Q9NQX5 325 aaPredicted RBP13.6□□□□□ -0.23
SCAF4-205ENST00000472318 SMARCA2P51531 1590 aa13.59□□□□□ -0.23
SCAF4-205ENST00000472318 HAP1P54257 671 aaPredicted RBP13.59□□□□□ -0.23
SCAF4-205ENST00000472318 ATAD2BQ9ULI0 1458 aa13.59□□□□□ -0.23
SCAF4-205ENST00000472318 NBPF26B4DH59 902 aa13.57□□□□□ -0.24
SCAF4-205ENST00000472318 TTC13Q8NBP0 860 aa13.57□□□□□ -0.24
SCAF4-205ENST00000472318 C3orf80F5H4A9 247 aa13.56□□□□□ -0.24
SCAF4-205ENST00000472318 SEMA3EO15041 775 aa13.54□□□□□ -0.24
SCAF4-205ENST00000472318 TATDN2Q93075 761 aa13.54□□□□□ -0.24
SCAF4-205ENST00000472318 SMAPO00193 183 aa13.53□□□□□ -0.24
SCAF4-205ENST00000472318 LRCH3Q96II8 777 aa13.53□□□□□ -0.24
SCAF4-205ENST00000472318 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.53□□□□□ -0.24
SCAF4-205ENST00000472318 IFFO2Q5TF58 517 aa13.52□□□□□ -0.25
SCAF4-205ENST00000472318 PADI6Q6TGC4 694 aa13.52□□□□□ -0.25
SCAF4-205ENST00000472318 NYAP1Q6ZVC0 841 aa13.52□□□□□ -0.25
SCAF4-205ENST00000472318 PNMA3Q9UL41 463 aa13.52□□□□□ -0.25
SCAF4-205ENST00000472318 WBP1LQ9NX94 342 aa13.51□□□□□ -0.25
SCAF4-205ENST00000472318 PTGDRQ13258 359 aa13.5□□□□□ -0.25
SCAF4-205ENST00000472318 KDM2AQ9Y2K7 1162 aa13.5□□□□□ -0.25
SCAF4-205ENST00000472318 NUDT18Q6ZVK8 323 aa13.49□□□□□ -0.25
SCAF4-205ENST00000472318 TSR3Q9UJK0 312 aaKnown RBP13.49□□□□□ -0.25
SCAF4-205ENST00000472318 BAZ1AQ9NRL2 1556 aaPredicted RBP13.49□□□□□ -0.25
SCAF4-205ENST00000472318 HMGXB3Q12766 1538 aa13.49□□□□□ -0.25
SCAF4-205ENST00000472318 HPS5Q9UPZ3 1129 aa13.48□□□□□ -0.25
SCAF4-205ENST00000472318 TESPA1A2RU30 521 aaPredicted RBP13.47□□□□□ -0.25
SCAF4-205ENST00000472318 SAMD7Q7Z3H4 446 aa13.47□□□□□ -0.25
SCAF4-205ENST00000472318 KIF21AQ7Z4S6 1674 aa13.45□□□□□ -0.26
SCAF4-205ENST00000472318 ITGBL1O95965 494 aaPredicted RBP13.45□□□□□ -0.26
SCAF4-205ENST00000472318 PDS5BQ9NTI5 1447 aa13.45□□□□□ -0.26
SCAF4-205ENST00000472318 LAMC3Q9Y6N6 1575 aa13.45□□□□□ -0.26
SCAF4-205ENST00000472318 NUTM2FA1L443 756 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms