RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 DEPDC5O75140 1603 aa11.7□□□□□ -0.54
HDAC3-206ENST00000471968 LRP5O75197 1615 aa11.7□□□□□ -0.54
HDAC3-206ENST00000471968 PHLPP1O60346 1717 aa11.69□□□□□ -0.54
HDAC3-206ENST00000471968 MYO5CQ9NQX4 1742 aa11.69□□□□□ -0.54
HDAC3-206ENST00000471968 ITSN2Q9NZM3 1697 aa11.69□□□□□ -0.54
HDAC3-206ENST00000471968 GGT6Q6P531 493 aa11.69□□□□□ -0.54
HDAC3-206ENST00000471968 ARHGAP5Q13017 1502 aa11.69□□□□□ -0.54
HDAC3-206ENST00000471968 TNRQ92752 1358 aa11.68□□□□□ -0.54
HDAC3-206ENST00000471968 XIRP1Q702N8 1843 aaKnown RBP11.68□□□□□ -0.54
HDAC3-206ENST00000471968 AFF2P51816 1311 aa11.67□□□□□ -0.54
HDAC3-206ENST00000471968 SUPT5HO00267 1087 aaKnown RBP11.67□□□□□ -0.54
HDAC3-206ENST00000471968 RBM6P78332 1123 aaKnown RBP11.66□□□□□ -0.54
HDAC3-206ENST00000471968 FBXO31Q5XUX0 539 aaPredicted RBP11.66□□□□□ -0.54
HDAC3-206ENST00000471968 KIDINS220Q9ULH0 1771 aa11.66□□□□□ -0.54
HDAC3-206ENST00000471968 FAM135AQ9P2D6 1515 aa11.65□□□□□ -0.54
HDAC3-206ENST00000471968 SAMD9Q5K651 1589 aa11.64□□□□□ -0.55
HDAC3-206ENST00000471968 QTRT2Q9H974 415 aaKnown RBP11.64□□□□□ -0.55
HDAC3-206ENST00000471968 KDM5DQ9BY66 1539 aa11.64□□□□□ -0.55
HDAC3-206ENST00000471968 LRRC9Q6ZRR7 1453 aa11.63□□□□□ -0.55
HDAC3-206ENST00000471968 UGGT1Q9NYU2 1555 aa11.63□□□□□ -0.55
HDAC3-206ENST00000471968 COL16A1Q07092 1604 aaPredicted RBP11.63□□□□□ -0.55
HDAC3-206ENST00000471968 TMEM94Q12767 1356 aa11.63□□□□□ -0.55
HDAC3-206ENST00000471968 FGD6Q6ZV73 1430 aa11.62□□□□□ -0.55
HDAC3-206ENST00000471968 CCDC125Q86Z20 511 aa11.6□□□□□ -0.55
HDAC3-206ENST00000471968 SLAIN2Q9P270 581 aa11.59□□□□□ -0.55
HDAC3-206ENST00000471968 ZC3H13Q5T200 1668 aaKnown RBP11.59□□□□□ -0.55
HDAC3-206ENST00000471968 RANGAP1P46060 587 aaPredicted RBP11.58□□□□□ -0.56
HDAC3-206ENST00000471968 NGLY1Q96IV0 654 aa11.58□□□□□ -0.56
HDAC3-206ENST00000471968 CEP350Q5VT06 3117 aa11.58□□□□□ -0.56
HDAC3-206ENST00000471968 KIF14Q15058 1648 aa11.57□□□□□ -0.56
HDAC3-206ENST00000471968 ATP7AQ04656 1500 aa11.57□□□□□ -0.56
HDAC3-206ENST00000471968 NLRP1Q9C000 1473 aa11.57□□□□□ -0.56
HDAC3-206ENST00000471968 MAP3K1Q13233 1512 aa11.56□□□□□ -0.56
HDAC3-206ENST00000471968 PSDA5PKW4 1024 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-206ENST00000471968 C8orf37Q96NL8 207 aa11.56□□□□□ -0.56
HDAC3-206ENST00000471968 MIA2Q96PC5 1412 aa11.55□□□□□ -0.56
HDAC3-206ENST00000471968 HRCP23327 699 aa11.55□□□□□ -0.56
HDAC3-206ENST00000471968 NHSL1Q5SYE7 1610 aa11.55□□□□□ -0.56
HDAC3-206ENST00000471968 A2MP01023 1474 aa11.55□□□□□ -0.56
HDAC3-206ENST00000471968 SHPRHQ149N8 1683 aa11.55□□□□□ -0.56
HDAC3-206ENST00000471968 SPAG9O60271 1321 aaKnown RBP11.55□□□□□ -0.56
HDAC3-206ENST00000471968 PLXNC1O60486 1568 aa11.54□□□□□ -0.56
HDAC3-206ENST00000471968 PROSER2Q86WR7 435 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-206ENST00000471968 PZPP20742 1482 aa11.54□□□□□ -0.56
HDAC3-206ENST00000471968 DEFB132Q7Z7B7 95 aa11.53□□□□□ -0.56
HDAC3-206ENST00000471968 NWD1Q149M9 1564 aa11.53□□□□□ -0.56
HDAC3-206ENST00000471968 SAMD9LQ8IVG5 1584 aa11.53□□□□□ -0.56
HDAC3-206ENST00000471968 MSH6P52701 1360 aa11.53□□□□□ -0.56
HDAC3-206ENST00000471968 PRXQ9BXM0 1461 aa11.52□□□□□ -0.56
HDAC3-206ENST00000471968 SCAF11Q99590 1463 aaKnown RBP11.51□□□□□ -0.57
HDAC3-206ENST00000471968 CDC42BPBQ9Y5S2 1711 aa11.5□□□□□ -0.57
HDAC3-206ENST00000471968 C1QTNF8P60827 252 aa11.5□□□□□ -0.57
HDAC3-206ENST00000471968 LTKP29376 864 aa11.49□□□□□ -0.57
HDAC3-206ENST00000471968 CHIC1Q5VXU3 224 aa11.49□□□□□ -0.57
HDAC3-206ENST00000471968 ATP1B4Q9UN42 357 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-206ENST00000471968 CDK11AQ9UQ88 783 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-206ENST00000471968 KCNA6P17658 529 aa11.48□□□□□ -0.57
HDAC3-206ENST00000471968 TXNDC2Q86VQ3 553 aa11.48□□□□□ -0.57
HDAC3-206ENST00000471968 TIAM1Q13009 1591 aa11.48□□□□□ -0.57
HDAC3-206ENST00000471968 BLMP54132 1417 aaPredicted RBP11.47□□□□□ -0.57
HDAC3-206ENST00000471968 ZNF784Q8NCA9 323 aaPredicted RBP11.47□□□□□ -0.57
HDAC3-206ENST00000471968 PRDM15P57071 1507 aaPredicted RBP11.46□□□□□ -0.57
HDAC3-206ENST00000471968 BCL9LQ86UU0 1499 aa11.46□□□□□ -0.57
HDAC3-206ENST00000471968 EHMT2Q96KQ7 1210 aa11.46□□□□□ -0.57
HDAC3-206ENST00000471968 AHDC1Q5TGY3 1603 aaPredicted RBP11.46□□□□□ -0.58
HDAC3-206ENST00000471968 TROQ12816 1431 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-206ENST00000471968 ZNF777Q9ULD5 760 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-206ENST00000471968 PREX2Q70Z35 1606 aa11.45□□□□□ -0.58
HDAC3-206ENST00000471968 CLIP1P30622 1438 aa11.44□□□□□ -0.58
HDAC3-206ENST00000471968 WASHC2CQ9Y4E1 1318 aa11.44□□□□□ -0.58
HDAC3-206ENST00000471968 HNRNPMP52272 730 aaKnown RBP eCLIP11.44□□□□□ -0.58
HDAC3-206ENST00000471968 SF3B2Q13435 895 aaKnown RBP11.44□□□□□ -0.58
HDAC3-206ENST00000471968 DIP2AQ14689 1571 aa11.44□□□□□ -0.58
HDAC3-206ENST00000471968 UTRNP46939 3433 aa11.43□□□□□ -0.58
HDAC3-206ENST00000471968 TRPC5Q9UL62 973 aaPredicted RBP11.43□□□□□ -0.58
HDAC3-206ENST00000471968 SYCP2Q9BX26 1530 aa11.43□□□□□ -0.58
HDAC3-206ENST00000471968 ABCC3O15438 1527 aa11.42□□□□□ -0.58
HDAC3-206ENST00000471968 DCAF8L1A6NGE4 600 aa11.42□□□□□ -0.58
HDAC3-206ENST00000471968 ADAMTS2O95450 1211 aa11.42□□□□□ -0.58
HDAC3-206ENST00000471968 USP21Q9UK80 565 aa11.42□□□□□ -0.58
HDAC3-206ENST00000471968 EID1Q9Y6B2 187 aa11.42□□□□□ -0.58
HDAC3-206ENST00000471968 NCOA2Q15596 1464 aa11.42□□□□□ -0.58
HDAC3-206ENST00000471968 INO80Q9ULG1 1556 aaPredicted RBP11.41□□□□□ -0.58
HDAC3-206ENST00000471968 SLC26A8Q96RN1 970 aa11.4□□□□□ -0.58
HDAC3-206ENST00000471968 NKTRP30414 1462 aaKnown RBP11.39□□□□□ -0.59
HDAC3-206ENST00000471968 KIF3BO15066 747 aa11.39□□□□□ -0.59
HDAC3-206ENST00000471968 KDM5AP29375 1690 aaKnown RBP11.39□□□□□ -0.59
HDAC3-206ENST00000471968 ARHGAP23Q9P227 1491 aa11.38□□□□□ -0.59
HDAC3-206ENST00000471968 R3HDM1Q15032 1099 aaKnown RBP11.38□□□□□ -0.59
HDAC3-206ENST00000471968 UBR1Q8IWV7 1749 aa11.38□□□□□ -0.59
HDAC3-206ENST00000471968 ADGBQ8N7X0 1667 aa11.37□□□□□ -0.59
HDAC3-206ENST00000471968 SLIT1O75093 1534 aa11.37□□□□□ -0.59
HDAC3-206ENST00000471968 SLC34A2O95436 690 aa11.37□□□□□ -0.59
HDAC3-206ENST00000471968 ATRNO75882 1429 aa11.36□□□□□ -0.59
HDAC3-206ENST00000471968 C14orf37Q86TY3 774 aa11.36□□□□□ -0.59
HDAC3-206ENST00000471968 SETD5Q9C0A6 1442 aa11.35□□□□□ -0.59
HDAC3-206ENST00000471968 BRINP3Q76B58 766 aa11.35□□□□□ -0.59
HDAC3-206ENST00000471968 MAST1Q9Y2H9 1570 aa11.34□□□□□ -0.59
HDAC3-206ENST00000471968 DHX29Q7Z478 1369 aaKnown RBP11.34□□□□□ -0.59
HDAC3-206ENST00000471968 LRRC59Q96AG4 307 aaKnown RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms