RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PIK3C2GO75747 1445 aa7.28□□□□□ -1.24
SYNE1-220ENST00000471834 IFT140Q96RY7 1462 aa7.27□□□□□ -1.25
SYNE1-220ENST00000471834 NPM1P06748 294 aaKnown RBP eCLIP7.27□□□□□ -1.25
SYNE1-220ENST00000471834 WDR7Q9Y4E6 1490 aa7.27□□□□□ -1.25
SYNE1-220ENST00000471834 TRHP20396 242 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-220ENST00000471834 PLXNC1O60486 1568 aa7.27□□□□□ -1.25
SYNE1-220ENST00000471834 NLRP1Q9C000 1473 aa7.26□□□□□ -1.25
SYNE1-220ENST00000471834 PRAG1Q86YV5 1406 aa7.26□□□□□ -1.25
SYNE1-220ENST00000471834 PTPRTO14522 1441 aa7.26□□□□□ -1.25
SYNE1-220ENST00000471834 TESK2Q96S53 571 aa7.26□□□□□ -1.25
SYNE1-220ENST00000471834 PBRM1Q86U86 1689 aa7.25□□□□□ -1.25
SYNE1-220ENST00000471834 PRKCSHP14314 528 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-220ENST00000471834 FBLN2P98095 1184 aa7.25□□□□□ -1.25
SYNE1-220ENST00000471834 RALBP1Q15311 655 aa7.25□□□□□ -1.25
SYNE1-220ENST00000471834 MAGI1Q96QZ7 1491 aaPredicted RBP7.25□□□□□ -1.25
SYNE1-220ENST00000471834 NOP58Q9Y2X3 529 aaKnown RBP7.24□□□□□ -1.25
SYNE1-220ENST00000471834 NRXN1Q9ULB1 1477 aa7.24□□□□□ -1.25
SYNE1-220ENST00000471834 PAK3O75914 559 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-220ENST00000471834 CDK11AQ9UQ88 783 aaPredicted RBP7.24□□□□□ -1.25
SYNE1-220ENST00000471834 ANKRD50Q9ULJ7 1429 aa7.24□□□□□ -1.25
SYNE1-220ENST00000471834 CDK13Q14004 1512 aaKnown RBP7.24□□□□□ -1.25
SYNE1-220ENST00000471834 USP47Q96K76 1375 aa7.23□□□□□ -1.25
SYNE1-220ENST00000471834 KIF15Q9NS87 1388 aa7.23□□□□□ -1.25
SYNE1-220ENST00000471834 ERCC6Q03468 1493 aa7.23□□□□□ -1.25
SYNE1-220ENST00000471834 SYNMO15061 1565 aa7.23□□□□□ -1.25
SYNE1-220ENST00000471834 TDRD9Q8NDG6 1382 aaKnown RBP7.23□□□□□ -1.25
SYNE1-220ENST00000471834 AAMPQ13685 434 aa7.22□□□□□ -1.25
SYNE1-220ENST00000471834 GRIN2AQ12879 1464 aa7.22□□□□□ -1.25
SYNE1-220ENST00000471834 DCAF8L1A6NGE4 600 aa7.22□□□□□ -1.25
SYNE1-220ENST00000471834 ZNF518AQ6AHZ1 1483 aa7.22□□□□□ -1.25
SYNE1-220ENST00000471834 TRIM52Q96A61 297 aa7.22□□□□□ -1.25
SYNE1-220ENST00000471834 NCOA3Q9Y6Q9 1424 aa7.22□□□□□ -1.25
SYNE1-220ENST00000471834 USP19O94966 1318 aa7.22□□□□□ -1.25
SYNE1-220ENST00000471834 ITSN2Q9NZM3 1697 aa7.21□□□□□ -1.25
SYNE1-220ENST00000471834 EIF3AQ14152 1382 aaKnown RBP7.21□□□□□ -1.25
SYNE1-220ENST00000471834 MYBBP1AQ9BQG0 1328 aaKnown RBP7.21□□□□□ -1.25
SYNE1-220ENST00000471834 RAPGEF6Q8TEU7 1601 aa7.21□□□□□ -1.25
SYNE1-220ENST00000471834 ADGBQ8N7X0 1667 aa7.21□□□□□ -1.26
SYNE1-220ENST00000471834 HNRNPUQ00839 825 aaKnown RBP eCLIP7.21□□□□□ -1.26
SYNE1-220ENST00000471834 NLRP13Q86W25 1043 aa7.21□□□□□ -1.26
SYNE1-220ENST00000471834 RTEL1-TNFRSF6BF6WH68 1400 aa7.21□□□□□ -1.26
SYNE1-220ENST00000471834 NINLQ9Y2I6 1382 aa7.2□□□□□ -1.26
SYNE1-220ENST00000471834 DEKP35659 375 aaKnown RBP7.2□□□□□ -1.26
SYNE1-220ENST00000471834 TRPM1Q7Z4N2 1603 aa7.2□□□□□ -1.26
SYNE1-220ENST00000471834 ADGRL1O94910 1474 aa7.2□□□□□ -1.26
SYNE1-220ENST00000471834 RSPH4AQ5TD94 716 aa7.2□□□□□ -1.26
SYNE1-220ENST00000471834 UBE2Q2Q8WVN8 375 aa7.19□□□□□ -1.26
SYNE1-220ENST00000471834 IQGAP3Q86VI3 1631 aa7.19□□□□□ -1.26
SYNE1-220ENST00000471834 ANKRD30AQ9BXX3 1397 aa7.18□□□□□ -1.26
SYNE1-220ENST00000471834 A2MP01023 1474 aa7.18□□□□□ -1.26
SYNE1-220ENST00000471834 PUS7Q96PZ0 661 aaKnown RBP7.18□□□□□ -1.26
SYNE1-220ENST00000471834 PPM1GO15355 546 aaPredicted RBP7.18□□□□□ -1.26
SYNE1-220ENST00000471834 EIF2AK4Q9P2K8 1649 aaKnown RBP7.18□□□□□ -1.26
SYNE1-220ENST00000471834 MRC2Q9UBG0 1479 aa7.18□□□□□ -1.26
SYNE1-220ENST00000471834 FAM50AQ14320 339 aaKnown RBP7.18□□□□□ -1.26
SYNE1-220ENST00000471834 RRP1P56182 461 aaKnown RBP7.18□□□□□ -1.26
SYNE1-220ENST00000471834 LMTK2Q8IWU2 1503 aa7.17□□□□□ -1.26
SYNE1-220ENST00000471834 ISY1Q9ULR0 285 aaKnown RBP7.17□□□□□ -1.26
SYNE1-220ENST00000471834 MYOM2P54296 1465 aa7.16□□□□□ -1.26
SYNE1-220ENST00000471834 CDC42BPAQ5VT25 1732 aa7.16□□□□□ -1.26
SYNE1-220ENST00000471834 ANTXR1Q9H6X2 564 aa7.16□□□□□ -1.26
SYNE1-220ENST00000471834 DDIT3P35638 169 aa7.16□□□□□ -1.26
SYNE1-220ENST00000471834 KIAA1210Q9ULL0 1709 aa7.16□□□□□ -1.26
SYNE1-220ENST00000471834 PPRC1Q5VV67 1664 aaKnown RBP7.15□□□□□ -1.26
SYNE1-220ENST00000471834 MRS2Q9HD23 443 aa7.15□□□□□ -1.26
SYNE1-220ENST00000471834 FSD2A1L4K1 749 aa7.15□□□□□ -1.26
SYNE1-220ENST00000471834 FAM135AQ9P2D6 1515 aa7.15□□□□□ -1.27
SYNE1-220ENST00000471834 KLHL34Q8N239 644 aa7.15□□□□□ -1.27
SYNE1-220ENST00000471834 IBTKQ9P2D0 1353 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-220ENST00000471834 SHROOM2Q13796 1616 aa7.14□□□□□ -1.27
SYNE1-220ENST00000471834 ERBINQ96RT1 1412 aa7.14□□□□□ -1.27
SYNE1-220ENST00000471834 PDE4AP27815 886 aa7.14□□□□□ -1.27
SYNE1-220ENST00000471834 CLEC17AQ6ZS10 378 aa7.14□□□□□ -1.27
SYNE1-220ENST00000471834 MYO3AQ8NEV4 1616 aa7.14□□□□□ -1.27
SYNE1-220ENST00000471834 USP32Q8NFA0 1604 aa7.13□□□□□ -1.27
SYNE1-220ENST00000471834 C8orf34Q49A92 452 aa7.13□□□□□ -1.27
SYNE1-220ENST00000471834 IQSEC2Q5JU85 1478 aa7.13□□□□□ -1.27
SYNE1-220ENST00000471834 UHRF1BP1LA0JNW5 1464 aa7.13□□□□□ -1.27
SYNE1-220ENST00000471834 ATP10BO94823 1461 aa7.13□□□□□ -1.27
SYNE1-220ENST00000471834 IQGAP1P46940 1657 aa7.13□□□□□ -1.27
SYNE1-220ENST00000471834 DEPDC5O75140 1603 aa7.13□□□□□ -1.27
SYNE1-220ENST00000471834 C9orf84Q5VXU9 1444 aa7.13□□□□□ -1.27
SYNE1-220ENST00000471834 POLR3AO14802 1390 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-220ENST00000471834 SYCP2Q9BX26 1530 aa7.13□□□□□ -1.27
SYNE1-220ENST00000471834 TRPM2O94759 1503 aa7.13□□□□□ -1.27
SYNE1-220ENST00000471834 INO80Q9ULG1 1556 aaPredicted RBP7.13□□□□□ -1.27
SYNE1-220ENST00000471834 AMER1Q5JTC6 1135 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-220ENST00000471834 CENPJQ9HC77 1338 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-220ENST00000471834 PRG4Q92954 1404 aaPredicted RBP7.12□□□□□ -1.27
SYNE1-220ENST00000471834 REREQ9P2R6 1566 aa7.12□□□□□ -1.27
SYNE1-220ENST00000471834 MADDQ8WXG6 1647 aa7.12□□□□□ -1.27
SYNE1-220ENST00000471834 TTC37Q6PGP7 1564 aa7.12□□□□□ -1.27
SYNE1-220ENST00000471834 FAM43AQ8N2R8 423 aa7.11□□□□□ -1.27
SYNE1-220ENST00000471834 ASXL2Q76L83 1435 aa7.11□□□□□ -1.27
SYNE1-220ENST00000471834 FOXD1Q16676 465 aa7.1□□□□□ -1.27
SYNE1-220ENST00000471834 PREX2Q70Z35 1606 aa7.1□□□□□ -1.27
SYNE1-220ENST00000471834 PLEKHH1Q9ULM0 1364 aa7.1□□□□□ -1.27
SYNE1-220ENST00000471834 CGNL1Q0VF96 1302 aa7.1□□□□□ -1.27
SYNE1-220ENST00000471834 DUSP27Q5VZP5 1158 aa7.1□□□□□ -1.27
SYNE1-220ENST00000471834 CCDC136Q96JN2 1154 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms