RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 CNTLNQ9NXG0 1405 aa22.06■■□□□ 1.12
SQSTM1-205ENST00000464493 EIF2AK4Q9P2K8 1649 aaKnown RBP22.06■■□□□ 1.12
SQSTM1-205ENST00000464493 ROCK1Q13464 1354 aa22.05■■□□□ 1.12
SQSTM1-205ENST00000464493 CEBPAP49715 358 aaPredicted RBP22.04■■□□□ 1.12
SQSTM1-205ENST00000464493 WASHC2CQ9Y4E1 1318 aa22.02■■□□□ 1.12
SQSTM1-205ENST00000464493 CLTCQ00610 1675 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-205ENST00000464493 RNF17Q9BXT8 1623 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-205ENST00000464493 ZMYM3Q14202 1370 aa22■■□□□ 1.11
SQSTM1-205ENST00000464493 ANKRD50Q9ULJ7 1429 aa21.99■■□□□ 1.11
SQSTM1-205ENST00000464493 MROH2AA6NES4 1674 aa21.99■■□□□ 1.11
SQSTM1-205ENST00000464493 C3P01024 1663 aa21.98■■□□□ 1.11
SQSTM1-205ENST00000464493 FAM135AQ9P2D6 1515 aa21.97■■□□□ 1.11
SQSTM1-205ENST00000464493 KDM5DQ9BY66 1539 aa21.96■■□□□ 1.11
SQSTM1-205ENST00000464493 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.96■■□□□ 1.11
SQSTM1-205ENST00000464493 MROH1Q8NDA8 1641 aa21.95■■□□□ 1.1
SQSTM1-205ENST00000464493 DEPDC5O75140 1603 aa21.93■■□□□ 1.1
SQSTM1-205ENST00000464493 KANK1Q14678 1352 aa21.92■■□□□ 1.1
SQSTM1-205ENST00000464493 SETD1BQ9UPS6 1966 aaKnown RBP21.92■■□□□ 1.1
SQSTM1-205ENST00000464493 ABCC3O15438 1527 aa21.91■■□□□ 1.1
SQSTM1-205ENST00000464493 PRDM15P57071 1507 aaPredicted RBP21.91■■□□□ 1.1
SQSTM1-205ENST00000464493 ZC3H13Q5T200 1668 aaKnown RBP21.9■■□□□ 1.1
SQSTM1-205ENST00000464493 NPATQ14207 1427 aa21.89■■□□□ 1.09
SQSTM1-205ENST00000464493 CEP152O94986 1710 aa21.87■■□□□ 1.09
SQSTM1-205ENST00000464493 NAIPQ13075 1403 aa21.87■■□□□ 1.09
SQSTM1-205ENST00000464493 PZPP20742 1482 aa21.85■■□□□ 1.09
SQSTM1-205ENST00000464493 FBXO31Q5XUX0 539 aaPredicted RBP21.85■■□□□ 1.09
SQSTM1-205ENST00000464493 VWDEQ8N2E2 1590 aa21.85■■□□□ 1.09
SQSTM1-205ENST00000464493 HFM1A2PYH4 1435 aa21.84■■□□□ 1.09
SQSTM1-205ENST00000464493 PREX1Q8TCU6 1659 aa21.84■■□□□ 1.09
SQSTM1-205ENST00000464493 CAMSAP1Q5T5Y3 1602 aa21.84■■□□□ 1.09
SQSTM1-205ENST00000464493 LMTK3Q96Q04 1460 aa21.83■■□□□ 1.09
SQSTM1-205ENST00000464493 GCC2Q8IWJ2 1684 aa21.82■■□□□ 1.08
SQSTM1-205ENST00000464493 UHRF1BP1Q6BDS2 1440 aa21.82■■□□□ 1.08
SQSTM1-205ENST00000464493 UNC13BO14795 1591 aa21.82■■□□□ 1.08
SQSTM1-205ENST00000464493 LMTK2Q8IWU2 1503 aa21.81■■□□□ 1.08
SQSTM1-205ENST00000464493 ARHGAP31Q2M1Z3 1444 aa21.8■■□□□ 1.08
SQSTM1-205ENST00000464493 NUP155O75694 1391 aa21.79■■□□□ 1.08
SQSTM1-205ENST00000464493 CFAP65Q6ZU64 1925 aaKnown RBP21.79■■□□□ 1.08
SQSTM1-205ENST00000464493 TNRQ92752 1358 aa21.78■■□□□ 1.08
SQSTM1-205ENST00000464493 HSPA2P54652 639 aa21.77■■□□□ 1.08
SQSTM1-205ENST00000464493 ERVK-7P63135 1459 aa21.75■■□□□ 1.07
SQSTM1-205ENST00000464493 SPATA31D1Q6ZQQ2 1576 aa21.74■■□□□ 1.07
SQSTM1-205ENST00000464493 IQGAP3Q86VI3 1631 aa21.74■■□□□ 1.07
SQSTM1-205ENST00000464493 EFCAB6Q5THR3 1501 aa21.74■■□□□ 1.07
SQSTM1-205ENST00000464493 MYO3AQ8NEV4 1616 aa21.73■■□□□ 1.07
SQSTM1-205ENST00000464493 TET3O43151 1660 aa21.73■■□□□ 1.07
SQSTM1-205ENST00000464493 TRIM52Q96A61 297 aa21.71■■□□□ 1.07
SQSTM1-205ENST00000464493 SETD5Q9C0A6 1442 aa21.7■■□□□ 1.06
SQSTM1-205ENST00000464493 RPRD2Q5VT52 1461 aaKnown RBP21.7■■□□□ 1.06
SQSTM1-205ENST00000464493 A2ML1A8K2U0 1454 aa21.69■■□□□ 1.06
SQSTM1-205ENST00000464493 NLRP1Q9C000 1473 aa21.69■■□□□ 1.06
SQSTM1-205ENST00000464493 CEP170BQ9Y4F5 1589 aaPredicted RBP21.69■■□□□ 1.06
SQSTM1-205ENST00000464493 ZNF142P52746 1687 aaPredicted RBP21.69■■□□□ 1.06
SQSTM1-205ENST00000464493 E9PCH4 1651 aa21.66■■□□□ 1.06
SQSTM1-205ENST00000464493 NOS1P29475 1434 aa21.65■■□□□ 1.06
SQSTM1-205ENST00000464493 ACIN1Q9UKV3 1341 aaKnown RBP21.64■■□□□ 1.05
SQSTM1-205ENST00000464493 THEMISQ8N1K5 641 aaPredicted RBP21.62■■□□□ 1.05
SQSTM1-205ENST00000464493 SLC4A1APQ9BWU0 796 aaKnown RBP21.62■■□□□ 1.05
SQSTM1-205ENST00000464493 RAB3GAP2Q9H2M9 1393 aa21.61■■□□□ 1.05
SQSTM1-205ENST00000464493 SYNMO15061 1565 aa21.61■■□□□ 1.05
SQSTM1-205ENST00000464493 UGGT1Q9NYU2 1555 aa21.61■■□□□ 1.05
SQSTM1-205ENST00000464493 IDI1Q13907 227 aa21.61■■□□□ 1.05
SQSTM1-205ENST00000464493 SLC52A1Q9NWF4 448 aa21.61■■□□□ 1.05
SQSTM1-205ENST00000464493 PKD2Q13563 968 aa21.59■■□□□ 1.05
SQSTM1-205ENST00000464493 STRCQ7RTU9 1775 aa21.58■■□□□ 1.04
SQSTM1-205ENST00000464493 STAG3Q9UJ98 1225 aa21.57■■□□□ 1.04
SQSTM1-205ENST00000464493 PLA2R1Q13018 1463 aa21.57■■□□□ 1.04
SQSTM1-205ENST00000464493 HRCP23327 699 aa21.56■■□□□ 1.04
SQSTM1-205ENST00000464493 MPHOSPH9Q99550 1183 aa21.56■■□□□ 1.04
SQSTM1-205ENST00000464493 DMRT2Q9Y5R5 561 aa21.56■■□□□ 1.04
SQSTM1-205ENST00000464493 NCKAP5LQ9HCH0 1330 aa21.55■■□□□ 1.04
SQSTM1-205ENST00000464493 PIK3C2BO00750 1634 aa21.55■■□□□ 1.04
SQSTM1-205ENST00000464493 UBR1Q8IWV7 1749 aa21.55■■□□□ 1.04
SQSTM1-205ENST00000464493 TRIM26Q12899 539 aaPredicted RBP21.54■■□□□ 1.04
SQSTM1-205ENST00000464493 PTPRTO14522 1441 aa21.54■■□□□ 1.04
SQSTM1-205ENST00000464493 SPHKAPQ2M3C7 1700 aa21.52■■□□□ 1.04
SQSTM1-205ENST00000464493 ANKLE2Q86XL3 938 aa21.52■■□□□ 1.04
SQSTM1-205ENST00000464493 KDM5AP29375 1690 aaKnown RBP21.51■■□□□ 1.03
SQSTM1-205ENST00000464493 FOXD1Q16676 465 aa21.49■■□□□ 1.03
SQSTM1-205ENST00000464493 CHGAP10645 457 aaKnown RBP21.48■■□□□ 1.03
SQSTM1-205ENST00000464493 ADGRB3O60242 1522 aa21.48■■□□□ 1.03
SQSTM1-205ENST00000464493 TMEM2Q9UHN6 1383 aa21.47■■□□□ 1.03
SQSTM1-205ENST00000464493 TRPM2O94759 1503 aa21.46■■□□□ 1.03
SQSTM1-205ENST00000464493 POLR1AO95602 1720 aaPredicted RBP21.46■■□□□ 1.03
SQSTM1-205ENST00000464493 ARHGAP23Q9P227 1491 aa21.45■■□□□ 1.03
SQSTM1-205ENST00000464493 SLIT1O75093 1534 aa21.45■■□□□ 1.02
SQSTM1-205ENST00000464493 TMEM131LA2VDJ0 1609 aa21.45■■□□□ 1.02
SQSTM1-205ENST00000464493 TXNDC2Q86VQ3 553 aa21.45■■□□□ 1.02
SQSTM1-205ENST00000464493 EID1Q9Y6B2 187 aa21.45■■□□□ 1.02
SQSTM1-205ENST00000464493 LTKP29376 864 aa21.44■■□□□ 1.02
SQSTM1-205ENST00000464493 MYO5BQ9ULV0 1848 aa21.43■■□□□ 1.02
SQSTM1-205ENST00000464493 CLTCL1P53675 1640 aa21.41■■□□□ 1.02
SQSTM1-205ENST00000464493 NEURL4Q96JN8 1562 aa21.41■■□□□ 1.02
SQSTM1-205ENST00000464493 MED14O60244 1454 aa21.41■■□□□ 1.02
SQSTM1-205ENST00000464493 SCAF11Q99590 1463 aaKnown RBP21.41■■□□□ 1.02
SQSTM1-205ENST00000464493 HDGFP51858 240 aaKnown RBP21.4■■□□□ 1.02
SQSTM1-205ENST00000464493 NPHP4O75161 1426 aaPredicted RBP21.39■■□□□ 1.02
SQSTM1-205ENST00000464493 KIF1BO60333 1816 aa21.37■■□□□ 1.01
SQSTM1-205ENST00000464493 RIMS2Q9UQ26 1411 aa21.37■■□□□ 1.01
SQSTM1-205ENST00000464493 ZNF326Q5BKZ1 582 aaKnown RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms