RNA–Protein interactions for RNA: ENST00000464001.1

ITGB1-208, Transcript of integrin subunit beta 1, humanhuman

TSL 2

Gene ITGB1, Length 316 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-208ENST00000464001 DDX12PQ92771 950 aa11.7□□□□□ -0.54
ITGB1-208ENST00000464001 ZBED2Q9BTP6 218 aa11.69□□□□□ -0.54
ITGB1-208ENST00000464001 PPP1R3GB7ZBB8 358 aa11.68□□□□□ -0.54
ITGB1-208ENST00000464001 PLCB2Q00722 1185 aa11.65□□□□□ -0.54
ITGB1-208ENST00000464001 C6orf132Q5T0Z8 1188 aa11.65□□□□□ -0.54
ITGB1-208ENST00000464001 NBR1Q14596 966 aa11.64□□□□□ -0.55
ITGB1-208ENST00000464001 RBM33Q96EV2 1170 aaKnown RBP11.64□□□□□ -0.55
ITGB1-208ENST00000464001 BHMG1C9JSJ3 638 aaPredicted RBP11.62□□□□□ -0.55
ITGB1-208ENST00000464001 COL9A1P20849 921 aa11.62□□□□□ -0.55
ITGB1-208ENST00000464001 HCSTQ9UBK5 93 aa11.62□□□□□ -0.55
ITGB1-208ENST00000464001 NBPF3Q9H094 633 aa11.61□□□□□ -0.55
ITGB1-208ENST00000464001 GRXCR2A6NFK2 248 aa11.6□□□□□ -0.55
ITGB1-208ENST00000464001 MAP3K7O43318 606 aa11.6□□□□□ -0.55
ITGB1-208ENST00000464001 EN1Q05925 392 aaPredicted RBP11.6□□□□□ -0.55
ITGB1-208ENST00000464001 MRPL50Q8N5N7 158 aaKnown RBP11.6□□□□□ -0.55
ITGB1-208ENST00000464001 KCTD12Q96CX2 325 aaKnown RBP11.6□□□□□ -0.55
ITGB1-208ENST00000464001 GOLGA8CPA6NN73 597 aa11.59□□□□□ -0.55
ITGB1-208ENST00000464001 ARHGEF1Q92888 912 aaKnown RBP11.59□□□□□ -0.55
ITGB1-208ENST00000464001 RABGEF1Q9UJ41 708 aa11.59□□□□□ -0.55
ITGB1-208ENST00000464001 ONECUT3O60422 494 aaPredicted RBP11.57□□□□□ -0.56
ITGB1-208ENST00000464001 PROX2Q3B8N5 592 aa11.57□□□□□ -0.56
ITGB1-208ENST00000464001 KCNV2Q8TDN2 545 aa11.55□□□□□ -0.56
ITGB1-208ENST00000464001 TSR1Q2NL82 804 aaKnown RBP11.54□□□□□ -0.56
ITGB1-208ENST00000464001 P3H3Q8IVL6 736 aa11.53□□□□□ -0.56
ITGB1-208ENST00000464001 KIAA1468Q9P260 1216 aa11.53□□□□□ -0.56
ITGB1-208ENST00000464001 TRIM6-TRIM34B2RNG4 842 aa11.52□□□□□ -0.57
ITGB1-208ENST00000464001 WNT2BQ93097 391 aa11.52□□□□□ -0.57
ITGB1-208ENST00000464001 OSBPP22059 807 aa11.51□□□□□ -0.57
ITGB1-208ENST00000464001 LAPTM4BQ86VI4 370 aa11.51□□□□□ -0.57
ITGB1-208ENST00000464001 CERKQ8TCT0 537 aa11.51□□□□□ -0.57
ITGB1-208ENST00000464001 HAP1P54257 671 aaPredicted RBP11.49□□□□□ -0.57
ITGB1-208ENST00000464001 PTPN5P54829 565 aa11.49□□□□□ -0.57
ITGB1-208ENST00000464001 PRIM1P49642 420 aaKnown RBP11.48□□□□□ -0.57
ITGB1-208ENST00000464001 THSD4Q6ZMP0 1018 aa11.48□□□□□ -0.57
ITGB1-208ENST00000464001 PACS2Q86VP3 889 aa11.48□□□□□ -0.57
ITGB1-208ENST00000464001 ANKK1Q8NFD2 765 aa11.47□□□□□ -0.57
ITGB1-208ENST00000464001 PRSS12P56730 875 aa11.45□□□□□ -0.58
ITGB1-208ENST00000464001 CDCA7LQ96GN5 454 aa11.44□□□□□ -0.58
ITGB1-208ENST00000464001 TSKSQ9UJT2 592 aa11.44□□□□□ -0.58
ITGB1-208ENST00000464001 FAM98CQ17RN3 349 aaKnown RBP11.43□□□□□ -0.58
ITGB1-208ENST00000464001 ZFRQ96KR1 1074 aaKnown RBP11.43□□□□□ -0.58
ITGB1-208ENST00000464001 SEPT9Q9UHD8 586 aaPredicted RBP11.43□□□□□ -0.58
ITGB1-208ENST00000464001 MLLT3P42568 568 aaPredicted RBP11.42□□□□□ -0.58
ITGB1-208ENST00000464001 CDHR5Q9HBB8 845 aa11.42□□□□□ -0.58
ITGB1-208ENST00000464001 PLA2G2EQ9NZK7 142 aa11.42□□□□□ -0.58
ITGB1-208ENST00000464001 RBM27Q9P2N5 1060 aaKnown RBP11.39□□□□□ -0.59
ITGB1-208ENST00000464001 SOWAHBA6NEL2 793 aa11.38□□□□□ -0.59
ITGB1-208ENST00000464001 NBPF26B4DH59 902 aa11.37□□□□□ -0.59
ITGB1-208ENST00000464001 BCAMP50895 628 aa11.36□□□□□ -0.59
ITGB1-208ENST00000464001 FAM198AQ9UFP1 575 aa11.36□□□□□ -0.59
ITGB1-208ENST00000464001 SEMA3EO15041 775 aa11.35□□□□□ -0.59
ITGB1-208ENST00000464001 TATDN2Q93075 761 aa11.35□□□□□ -0.59
ITGB1-208ENST00000464001 LRCH3Q96II8 777 aa11.35□□□□□ -0.59
ITGB1-208ENST00000464001 NPDC1Q9NQX5 325 aaPredicted RBP11.35□□□□□ -0.59
ITGB1-208ENST00000464001 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.35□□□□□ -0.59
ITGB1-208ENST00000464001 PNMA3Q9UL41 463 aa11.35□□□□□ -0.59
ITGB1-208ENST00000464001 SMAPO00193 183 aa11.33□□□□□ -0.6
ITGB1-208ENST00000464001 PADI6Q6TGC4 694 aa11.32□□□□□ -0.6
ITGB1-208ENST00000464001 NYAP1Q6ZVC0 841 aa11.32□□□□□ -0.6
ITGB1-208ENST00000464001 VSIG10Q8N0Z9 540 aa11.32□□□□□ -0.6
ITGB1-208ENST00000464001 KDM2AQ9Y2K7 1162 aa11.32□□□□□ -0.6
ITGB1-208ENST00000464001 SMYD5Q6GMV2 418 aa11.31□□□□□ -0.6
ITGB1-208ENST00000464001 NUDT18Q6ZVK8 323 aa11.31□□□□□ -0.6
ITGB1-208ENST00000464001 TTC13Q8NBP0 860 aa11.31□□□□□ -0.6
ITGB1-208ENST00000464001 NUTM2FA1L443 756 aa11.3□□□□□ -0.6
ITGB1-208ENST00000464001 TSR3Q9UJK0 312 aaKnown RBP11.3□□□□□ -0.6
ITGB1-208ENST00000464001 HDGFP51858 240 aaKnown RBP11.29□□□□□ -0.6
ITGB1-208ENST00000464001 PTGDRQ13258 359 aa11.29□□□□□ -0.6
ITGB1-208ENST00000464001 WBP1LQ9NX94 342 aa11.29□□□□□ -0.6
ITGB1-208ENST00000464001 HPS5Q9UPZ3 1129 aa11.29□□□□□ -0.6
ITGB1-208ENST00000464001 TESPA1A2RU30 521 aaPredicted RBP11.28□□□□□ -0.6
ITGB1-208ENST00000464001 C3orf80F5H4A9 247 aa11.28□□□□□ -0.6
ITGB1-208ENST00000464001 SAMD7Q7Z3H4 446 aa11.27□□□□□ -0.61
ITGB1-208ENST00000464001 IFFO2Q5TF58 517 aa11.26□□□□□ -0.61
ITGB1-208ENST00000464001 PPP4CP60510 307 aa11.25□□□□□ -0.61
ITGB1-208ENST00000464001 FCHSD2O94868 740 aa11.24□□□□□ -0.61
ITGB1-208ENST00000464001 EYA1Q99502 592 aa11.21□□□□□ -0.61
ITGB1-208ENST00000464001 ITGBL1O95965 494 aaPredicted RBP11.2□□□□□ -0.62
ITGB1-208ENST00000464001 SLC4A3P48751 1232 aa11.19□□□□□ -0.62
ITGB1-208ENST00000464001 RBM26Q5T8P6 1007 aaKnown RBP11.19□□□□□ -0.62
ITGB1-208ENST00000464001 RBM46Q8TBY0 533 aaKnown RBP11.19□□□□□ -0.62
ITGB1-208ENST00000464001 NECTIN2Q92692 538 aa11.19□□□□□ -0.62
ITGB1-208ENST00000464001 RNF40O75150 1001 aa11.18□□□□□ -0.62
ITGB1-208ENST00000464001 SWT1Q5T5J6 900 aaKnown RBP11.18□□□□□ -0.62
ITGB1-208ENST00000464001 SLF2Q8IX21 1173 aa11.17□□□□□ -0.62
ITGB1-208ENST00000464001 KCNC4Q03721 635 aa11.16□□□□□ -0.62
ITGB1-208ENST00000464001 HIC1Q14526 733 aa11.16□□□□□ -0.62
ITGB1-208ENST00000464001 ADGRG1Q9Y653 693 aa11.16□□□□□ -0.62
ITGB1-208ENST00000464001 DNAJB2P25686 324 aa11.15□□□□□ -0.62
ITGB1-208ENST00000464001 A0A0G2JS52 829 aa11.14□□□□□ -0.63
ITGB1-208ENST00000464001 TULP1O00294 542 aaPredicted RBP11.12□□□□□ -0.63
ITGB1-208ENST00000464001 OATP04181 439 aa11.11□□□□□ -0.63
ITGB1-208ENST00000464001 FAM161AQ3B820 660 aa11.11□□□□□ -0.63
ITGB1-208ENST00000464001 RCCD1A6NED2 376 aa11.1□□□□□ -0.63
ITGB1-208ENST00000464001 GNPATO15228 680 aa11.1□□□□□ -0.63
ITGB1-208ENST00000464001 RGS20O76081 388 aa11.1□□□□□ -0.63
ITGB1-208ENST00000464001 TMEM134Q9H6X4 195 aa11.09□□□□□ -0.63
ITGB1-208ENST00000464001 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.08□□□□□ -0.64
ITGB1-208ENST00000464001 APLP1P51693 650 aa11.08□□□□□ -0.64
ITGB1-208ENST00000464001 GPIHBP1Q8IV16 184 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms