RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 RIMS1Q86UR5 1692 aaKnown RBP29.95■■■□□ 2.38
COL9A3-204ENST00000463487 FAM135AQ9P2D6 1515 aa29.91■■■□□ 2.38
COL9A3-204ENST00000463487 RNF17Q9BXT8 1623 aaKnown RBP29.9■■■□□ 2.38
COL9A3-204ENST00000463487 PTPRMP28827 1452 aa29.9■■■□□ 2.38
COL9A3-204ENST00000463487 ANKRD50Q9ULJ7 1429 aa29.89■■■□□ 2.38
COL9A3-204ENST00000463487 KDM5DQ9BY66 1539 aa29.84■■■□□ 2.37
COL9A3-204ENST00000463487 WASHC2CQ9Y4E1 1318 aa29.83■■■□□ 2.37
COL9A3-204ENST00000463487 MROH2AA6NES4 1674 aa29.82■■■□□ 2.36
COL9A3-204ENST00000463487 KANK1Q14678 1352 aa29.82■■■□□ 2.36
COL9A3-204ENST00000463487 CLTCQ00610 1675 aaKnown RBP29.81■■■□□ 2.36
COL9A3-204ENST00000463487 ZC3H13Q5T200 1668 aaKnown RBP29.8■■■□□ 2.36
COL9A3-204ENST00000463487 PRDM15P57071 1507 aaPredicted RBP29.8■■■□□ 2.36
COL9A3-204ENST00000463487 DEPDC5O75140 1603 aa29.79■■■□□ 2.36
COL9A3-204ENST00000463487 HFM1A2PYH4 1435 aa29.77■■■□□ 2.36
COL9A3-204ENST00000463487 MROH1Q8NDA8 1641 aa29.76■■■□□ 2.35
COL9A3-204ENST00000463487 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.76■■■□□ 2.352e-7■□□□□ 10.2
COL9A3-204ENST00000463487 GCC2Q8IWJ2 1684 aa29.76■■■□□ 2.35
COL9A3-204ENST00000463487 PLPPR3Q6T4P5 718 aa29.75■■■□□ 2.35
COL9A3-204ENST00000463487 ZMYM3Q14202 1370 aa29.75■■■□□ 2.35
COL9A3-204ENST00000463487 C3P01024 1663 aa29.73■■■□□ 2.35
COL9A3-204ENST00000463487 NAIPQ13075 1403 aa29.73■■■□□ 2.35
COL9A3-204ENST00000463487 ABCC3O15438 1527 aa29.72■■■□□ 2.35
COL9A3-204ENST00000463487 CEBPAP49715 358 aaPredicted RBP29.69■■■□□ 2.34
COL9A3-204ENST00000463487 UNC13BO14795 1591 aa29.69■■■□□ 2.34
COL9A3-204ENST00000463487 CEP152O94986 1710 aa29.67■■■□□ 2.34
COL9A3-204ENST00000463487 NPATQ14207 1427 aa29.66■■■□□ 2.34
COL9A3-204ENST00000463487 VWDEQ8N2E2 1590 aa29.64■■■□□ 2.34
COL9A3-204ENST00000463487 CAMSAP1Q5T5Y3 1602 aa29.64■■■□□ 2.34
COL9A3-204ENST00000463487 PZPP20742 1482 aa29.64■■■□□ 2.34
COL9A3-204ENST00000463487 LMTK2Q8IWU2 1503 aa29.64■■■□□ 2.34
COL9A3-204ENST00000463487 ACIN1Q9UKV3 1341 aaKnown RBP29.62■■■□□ 2.33
COL9A3-204ENST00000463487 SETD1BQ9UPS6 1966 aaKnown RBP29.6■■■□□ 2.33
COL9A3-204ENST00000463487 NUP155O75694 1391 aa29.6■■■□□ 2.33
COL9A3-204ENST00000463487 ARHGAP31Q2M1Z3 1444 aa29.59■■■□□ 2.33
COL9A3-204ENST00000463487 IQGAP3Q86VI3 1631 aa29.57■■■□□ 2.32
COL9A3-204ENST00000463487 PREX1Q8TCU6 1659 aa29.56■■■□□ 2.32
COL9A3-204ENST00000463487 SETD5Q9C0A6 1442 aa29.56■■■□□ 2.32
COL9A3-204ENST00000463487 UHRF1BP1Q6BDS2 1440 aa29.55■■■□□ 2.32
COL9A3-204ENST00000463487 TET3O43151 1660 aa29.55■■■□□ 2.32
COL9A3-204ENST00000463487 EFCAB6Q5THR3 1501 aa29.55■■■□□ 2.32
COL9A3-204ENST00000463487 TRIM52Q96A61 297 aa29.53■■■□□ 2.32
COL9A3-204ENST00000463487 TNRQ92752 1358 aa29.52■■■□□ 2.32
COL9A3-204ENST00000463487 RPRD2Q5VT52 1461 aaKnown RBP29.51■■■□□ 2.31
COL9A3-204ENST00000463487 FBXO31Q5XUX0 539 aaPredicted RBP29.5■■■□□ 2.31
COL9A3-204ENST00000463487 ERVK-7P63135 1459 aa29.49■■■□□ 2.31
COL9A3-204ENST00000463487 SPATA31D1Q6ZQQ2 1576 aa29.48■■■□□ 2.31
COL9A3-204ENST00000463487 TRIM26Q12899 539 aaPredicted RBP29.48■■■□□ 2.31
COL9A3-204ENST00000463487 LMTK3Q96Q04 1460 aa29.46■■■□□ 2.31
COL9A3-204ENST00000463487 MYO3AQ8NEV4 1616 aa29.45■■■□□ 2.31
COL9A3-204ENST00000463487 NLRP1Q9C000 1473 aa29.43■■■□□ 2.3
COL9A3-204ENST00000463487 RAB3GAP2Q9H2M9 1393 aa29.43■■■□□ 2.3
COL9A3-204ENST00000463487 CFAP65Q6ZU64 1925 aaKnown RBP29.42■■■□□ 2.3
COL9A3-204ENST00000463487 SLC4A1APQ9BWU0 796 aaKnown RBP29.39■■■□□ 2.3
COL9A3-204ENST00000463487 E9PCH4 1651 aa29.39■■■□□ 2.3
COL9A3-204ENST00000463487 ZNF142P52746 1687 aaPredicted RBP29.39■■■□□ 2.3
COL9A3-204ENST00000463487 CEP170BQ9Y4F5 1589 aaPredicted RBP29.39■■■□□ 2.29
COL9A3-204ENST00000463487 A2ML1A8K2U0 1454 aa29.38■■■□□ 2.29
COL9A3-204ENST00000463487 HRCP23327 699 aa29.38■■■□□ 2.29
COL9A3-204ENST00000463487 NOS1P29475 1434 aa29.37■■■□□ 2.29
COL9A3-204ENST00000463487 SLC52A1Q9NWF4 448 aa29.32■■■□□ 2.28
COL9A3-204ENST00000463487 PKD2Q13563 968 aa29.31■■■□□ 2.28
COL9A3-204ENST00000463487 SYNMO15061 1565 aa29.3■■■□□ 2.28
COL9A3-204ENST00000463487 UGGT1Q9NYU2 1555 aa29.3■■■□□ 2.28
COL9A3-204ENST00000463487 HSPA2P54652 639 aa29.29■■■□□ 2.28
COL9A3-204ENST00000463487 THEMISQ8N1K5 641 aaPredicted RBP29.28■■■□□ 2.28
COL9A3-204ENST00000463487 MPHOSPH9Q99550 1183 aa29.28■■■□□ 2.28
COL9A3-204ENST00000463487 STAG3Q9UJ98 1225 aa29.28■■■□□ 2.28
COL9A3-204ENST00000463487 SPHKAPQ2M3C7 1700 aa29.26■■■□□ 2.27
COL9A3-204ENST00000463487 PTPRTO14522 1441 aa29.23■■■□□ 2.27
COL9A3-204ENST00000463487 PLA2R1Q13018 1463 aa29.23■■■□□ 2.27
COL9A3-204ENST00000463487 IDI1Q13907 227 aa29.22■■■□□ 2.27
COL9A3-204ENST00000463487 KDM5AP29375 1690 aaKnown RBP29.21■■■□□ 2.27
COL9A3-204ENST00000463487 PIK3C2BO00750 1634 aa29.21■■■□□ 2.27
COL9A3-204ENST00000463487 UBR1Q8IWV7 1749 aa29.2■■■□□ 2.26
COL9A3-204ENST00000463487 TRPM2O94759 1503 aa29.2■■■□□ 2.26
COL9A3-204ENST00000463487 ADGRB3O60242 1522 aa29.18■■■□□ 2.26
COL9A3-204ENST00000463487 DMRT2Q9Y5R5 561 aa29.15■■■□□ 2.26
COL9A3-204ENST00000463487 CHGAP10645 457 aaKnown RBP29.13■■■□□ 2.25
COL9A3-204ENST00000463487 FOXD1Q16676 465 aa29.12■■■□□ 2.25
COL9A3-204ENST00000463487 ANKLE2Q86XL3 938 aa29.12■■■□□ 2.25
COL9A3-204ENST00000463487 EID1Q9Y6B2 187 aa29.1■■■□□ 2.25
COL9A3-204ENST00000463487 CCDC144AA2RUR9 1427 aa29.1■■■□□ 2.25
COL9A3-204ENST00000463487 TMEM2Q9UHN6 1383 aa29.08■■■□□ 2.25
COL9A3-204ENST00000463487 SLIT1O75093 1534 aa29.08■■■□□ 2.25
COL9A3-204ENST00000463487 TMEM131LA2VDJ0 1609 aa29.08■■■□□ 2.25
COL9A3-204ENST00000463487 CLTCL1P53675 1640 aa29.08■■■□□ 2.25
COL9A3-204ENST00000463487 POLR1AO95602 1720 aaPredicted RBP29.08■■■□□ 2.25
COL9A3-204ENST00000463487 STRCQ7RTU9 1775 aa29.08■■■□□ 2.25
COL9A3-204ENST00000463487 HDGFP51858 240 aaKnown RBP29.07■■■□□ 2.24
COL9A3-204ENST00000463487 ARHGAP23Q9P227 1491 aa29.05■■■□□ 2.24
COL9A3-204ENST00000463487 NCKAP5LQ9HCH0 1330 aa29.05■■■□□ 2.24
COL9A3-204ENST00000463487 KIF1BO60333 1816 aa29.05■■■□□ 2.24
COL9A3-204ENST00000463487 SCAF11Q99590 1463 aaKnown RBP29.04■■■□□ 2.24
COL9A3-204ENST00000463487 TXNDC2Q86VQ3 553 aa29.02■■■□□ 2.24
COL9A3-204ENST00000463487 PCGF6Q9BYE7 350 aa29.02■■■□□ 2.24
COL9A3-204ENST00000463487 MYO5BQ9ULV0 1848 aa29.01■■■□□ 2.23
COL9A3-204ENST00000463487 ZNF326Q5BKZ1 582 aaKnown RBP29■■■□□ 2.23
COL9A3-204ENST00000463487 ABCF1Q8NE71 845 aaKnown RBP eCLIP29■■■□□ 2.23
COL9A3-204ENST00000463487 PPP1R15AO75807 674 aaPredicted RBP28.98■■■□□ 2.23
COL9A3-204ENST00000463487 MED14O60244 1454 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms