RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 PLXNC1O60486 1568 aa16.31■□□□□ 0.2
VTA1-203ENST00000452973 ST20-MTHFSA0A0A6YYL1 179 aa16.3■□□□□ 0.2
VTA1-203ENST00000452973 KIF3BO15066 747 aa16.3■□□□□ 0.2
VTA1-203ENST00000452973 CCDC184Q52MB2 194 aa16.29■□□□□ 0.2
VTA1-203ENST00000452973 ERBINQ96RT1 1412 aa16.29■□□□□ 0.2
VTA1-203ENST00000452973 PLA2R1Q13018 1463 aa16.29■□□□□ 0.2
VTA1-203ENST00000452973 ROCK2O75116 1388 aaKnown RBP16.29■□□□□ 0.2
VTA1-203ENST00000452973 ADGRL1O94910 1474 aa16.28■□□□□ 0.2
VTA1-203ENST00000452973 NBPF1Q3BBV0 1214 aa16.28■□□□□ 0.2
VTA1-203ENST00000452973 UNC13BO14795 1591 aa16.27■□□□□ 0.2
VTA1-203ENST00000452973 PRKRIP1Q9H875 184 aaPredicted RBP16.27■□□□□ 0.2
VTA1-203ENST00000452973 HNRNPUQ00839 825 aaKnown RBP eCLIP16.27■□□□□ 0.19
VTA1-203ENST00000452973 UHRF1BP1Q6BDS2 1440 aa16.26■□□□□ 0.19
VTA1-203ENST00000452973 FAM9BQ8IZU0 186 aa16.25■□□□□ 0.19
VTA1-203ENST00000452973 RALGAPBQ86X10 1494 aa16.25■□□□□ 0.19
VTA1-203ENST00000452973 MRS2Q9HD23 443 aa16.24■□□□□ 0.19
VTA1-203ENST00000452973 ZFYVE16Q7Z3T8 1539 aa16.23■□□□□ 0.19
VTA1-203ENST00000452973 IQGAP3Q86VI3 1631 aa16.23■□□□□ 0.19
VTA1-203ENST00000452973 ABCA9Q8IUA7 1624 aa16.23■□□□□ 0.19
VTA1-203ENST00000452973 CYB5RLQ6IPT4 315 aa16.23■□□□□ 0.19
VTA1-203ENST00000452973 RTEL1-TNFRSF6BF6WH68 1400 aa16.22■□□□□ 0.19
VTA1-203ENST00000452973 BCORL1Q5H9F3 1711 aa16.22■□□□□ 0.19
VTA1-203ENST00000452973 SUPT16HQ9Y5B9 1047 aaKnown RBP16.22■□□□□ 0.19
VTA1-203ENST00000452973 ARAP3Q8WWN8 1544 aa16.22■□□□□ 0.19
VTA1-203ENST00000452973 KDM5CP41229 1560 aa16.22■□□□□ 0.19
VTA1-203ENST00000452973 ATP7AQ04656 1500 aa16.21■□□□□ 0.19
VTA1-203ENST00000452973 CD109Q6YHK3 1445 aa16.21■□□□□ 0.19
VTA1-203ENST00000452973 A2MP01023 1474 aa16.2■□□□□ 0.18
VTA1-203ENST00000452973 PRAG1Q86YV5 1406 aa16.2■□□□□ 0.18
VTA1-203ENST00000452973 KANK1Q14678 1352 aa16.19■□□□□ 0.18
VTA1-203ENST00000452973 BCANQ96GW7 911 aa16.18■□□□□ 0.18
VTA1-203ENST00000452973 MAGI2Q86UL8 1455 aa16.18■□□□□ 0.18
VTA1-203ENST00000452973 GGT6Q6P531 493 aa16.17■□□□□ 0.18
VTA1-203ENST00000452973 RAPGEF3O95398 923 aa16.17■□□□□ 0.18
VTA1-203ENST00000452973 DHX29Q7Z478 1369 aaKnown RBP16.16■□□□□ 0.18
VTA1-203ENST00000452973 FKBP8Q14318 412 aa16.16■□□□□ 0.18
VTA1-203ENST00000452973 SENP3-EIF4A1A0A087X0R7 540 aa16.15■□□□□ 0.18
VTA1-203ENST00000452973 INO80Q9ULG1 1556 aaPredicted RBP16.13■□□□□ 0.17
VTA1-203ENST00000452973 E9PCH4 1651 aa16.13■□□□□ 0.17
VTA1-203ENST00000452973 CHGAP10645 457 aaKnown RBP16.13■□□□□ 0.17
VTA1-203ENST00000452973 POLR1AO95602 1720 aaPredicted RBP16.13■□□□□ 0.17
VTA1-203ENST00000452973 ARID4BQ4LE39 1312 aaPredicted RBP16.12■□□□□ 0.17
VTA1-203ENST00000452973 ATP10AO60312 1499 aa16.12■□□□□ 0.17
VTA1-203ENST00000452973 ZNF518AQ6AHZ1 1483 aa16.12■□□□□ 0.17
VTA1-203ENST00000452973 TRPM1Q7Z4N2 1603 aa16.1■□□□□ 0.17
VTA1-203ENST00000452973 NEFLP07196 543 aa16.1■□□□□ 0.17
VTA1-203ENST00000452973 KIDINS220Q9ULH0 1771 aa16.08■□□□□ 0.16
VTA1-203ENST00000452973 TMC1Q8TDI8 760 aa16.07■□□□□ 0.16
VTA1-203ENST00000452973 UGGT1Q9NYU2 1555 aa16.07■□□□□ 0.16
VTA1-203ENST00000452973 POGZQ7Z3K3 1410 aa16.06■□□□□ 0.16
VTA1-203ENST00000452973 TESK2Q96S53 571 aa16.06■□□□□ 0.16
VTA1-203ENST00000452973 DISP3Q9P2K9 1392 aa16.06■□□□□ 0.16
VTA1-203ENST00000452973 WASHC2CQ9Y4E1 1318 aa16.06■□□□□ 0.16
VTA1-203ENST00000452973 GPRASP1Q5JY77 1395 aa16.05■□□□□ 0.16
VTA1-203ENST00000452973 TRPM2O94759 1503 aa16.05■□□□□ 0.16
VTA1-203ENST00000452973 DEPDC5O75140 1603 aa16.05■□□□□ 0.16
VTA1-203ENST00000452973 PTPRTO14522 1441 aa16.05■□□□□ 0.16
VTA1-203ENST00000452973 CLTCL1P53675 1640 aa16.05■□□□□ 0.16
VTA1-203ENST00000452973 IRX6P78412 446 aaPredicted RBP16.04■□□□□ 0.16
VTA1-203ENST00000452973 TMF1P82094 1093 aa16.04■□□□□ 0.16
VTA1-203ENST00000452973 SPHKAPQ2M3C7 1700 aa16.04■□□□□ 0.16
VTA1-203ENST00000452973 TET3O43151 1660 aa16.04■□□□□ 0.16
VTA1-203ENST00000452973 CFAP65Q6ZU64 1925 aaKnown RBP16.04■□□□□ 0.16
VTA1-203ENST00000452973 FAM69CQ0P6D2 419 aa16.03■□□□□ 0.16
VTA1-203ENST00000452973 CC2D1BQ5T0F9 858 aaKnown RBP16.03■□□□□ 0.16
VTA1-203ENST00000452973 SENP3Q9H4L4 574 aaPredicted RBP16.03■□□□□ 0.16
VTA1-203ENST00000452973 CFAP70Q5T0N1 1121 aa16.02■□□□□ 0.16
VTA1-203ENST00000452973 MROH1Q8NDA8 1641 aa16.02■□□□□ 0.15
VTA1-203ENST00000452973 PRDM15P57071 1507 aaPredicted RBP16.01■□□□□ 0.15
VTA1-203ENST00000452973 PANK3Q9H999 370 aa16.01■□□□□ 0.15
VTA1-203ENST00000452973 EIF2AK4Q9P2K8 1649 aaKnown RBP16.01■□□□□ 0.15
VTA1-203ENST00000452973 ADGRF5Q8IZF2 1346 aa16.01■□□□□ 0.15
VTA1-203ENST00000452973 VWDEQ8N2E2 1590 aa16■□□□□ 0.15
VTA1-203ENST00000452973 NUTM2DQ5VT03 806 aaPredicted RBP15.99■□□□□ 0.15
VTA1-203ENST00000452973 MLH3Q9UHC1 1453 aa15.99■□□□□ 0.15
VTA1-203ENST00000452973 CFAP74Q9C0B2 1584 aa15.98■□□□□ 0.15
VTA1-203ENST00000452973 PELP1Q8IZL8 1130 aaKnown RBP15.98■□□□□ 0.15
VTA1-203ENST00000452973 HECW2Q9P2P5 1572 aa15.98■□□□□ 0.15
VTA1-203ENST00000452973 CEP152O94986 1710 aa15.97■□□□□ 0.15
VTA1-203ENST00000452973 PPRC1Q5VV67 1664 aaKnown RBP15.97■□□□□ 0.15
VTA1-203ENST00000452973 MADDQ8WXG6 1647 aa15.97■□□□□ 0.15
VTA1-203ENST00000452973 EFCAB6Q5THR3 1501 aa15.96■□□□□ 0.15
VTA1-203ENST00000452973 COL17A1Q9UMD9 1497 aaPredicted RBP15.96■□□□□ 0.15
VTA1-203ENST00000452973 MYBBP1AQ9BQG0 1328 aaKnown RBP15.96■□□□□ 0.15
VTA1-203ENST00000452973 RALBP1Q15311 655 aa15.96■□□□□ 0.15
VTA1-203ENST00000452973 ZBED9Q6R2W3 1325 aa15.96■□□□□ 0.15
VTA1-203ENST00000452973 PER1O15534 1290 aaPredicted RBP15.96■□□□□ 0.15
VTA1-203ENST00000452973 PNISRQ8TF01 805 aaKnown RBP15.96■□□□□ 0.15
VTA1-203ENST00000452973 NEO1Q92859 1461 aa15.96■□□□□ 0.15
VTA1-203ENST00000452973 KTN1Q86UP2 1357 aaKnown RBP15.96■□□□□ 0.14
VTA1-203ENST00000452973 FRMPD1Q5SYB0 1578 aa15.96■□□□□ 0.14
VTA1-203ENST00000452973 NPATQ14207 1427 aa15.95■□□□□ 0.14
VTA1-203ENST00000452973 SALL2Q9Y467 1007 aaPredicted RBP15.95■□□□□ 0.14
VTA1-203ENST00000452973 STAC3Q96MF2 364 aa15.95■□□□□ 0.14
VTA1-203ENST00000452973 ABCA6Q8N139 1617 aa15.95■□□□□ 0.14
VTA1-203ENST00000452973 YEATS2Q9ULM3 1422 aa15.94■□□□□ 0.14
VTA1-203ENST00000452973 RIMBP3CA6NJZ7 1639 aa15.92■□□□□ 0.14
VTA1-203ENST00000452973 RIMBP3BA6NNM3 1639 aa15.92■□□□□ 0.14
VTA1-203ENST00000452973 RNF17Q9BXT8 1623 aaKnown RBP15.92■□□□□ 0.14
VTA1-203ENST00000452973 RIMBP3Q9UFD9 1639 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms