RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	NCOA2	Q15596	1464 aa		13.79	□□□□□ -0.2
RFX3-209	ENST00000451859	PLEKHH2	Q8IVE3	1493 aa		13.79	□□□□□ -0.2
RFX3-209	ENST00000451859	LMTK3	Q96Q04	1460 aa		13.79	□□□□□ -0.2
RFX3-209	ENST00000451859	PREX1	Q8TCU6	1659 aa		13.79	□□□□□ -0.2
RFX3-209	ENST00000451859	SPAG9	O60271	1321 aa	Known RBP	13.78	□□□□□ -0.2
RFX3-209	ENST00000451859	ADGB	Q8N7X0	1667 aa		13.77	□□□□□ -0.21
RFX3-209	ENST00000451859	ZNF644	Q9H582	1327 aa	Predicted RBP	13.77	□□□□□ -0.21
RFX3-209	ENST00000451859	CEBPA	P49715	358 aa	Predicted RBP	13.76	□□□□□ -0.21
RFX3-209	ENST00000451859	AGL	P35573	1532 aa		13.75	□□□□□ -0.21
RFX3-209	ENST00000451859	KIAA1107	Q9UPP5	1409 aa		13.75	□□□□□ -0.21
RFX3-209	ENST00000451859	SETD1B	Q9UPS6	1966 aa	Known RBP	13.75	□□□□□ -0.21
RFX3-209	ENST00000451859	HSPA2	P54652	639 aa		13.75	□□□□□ -0.21
RFX3-209	ENST00000451859	CLTC	Q00610	1675 aa	Known RBP	13.75	□□□□□ -0.21
RFX3-209	ENST00000451859	CAMSAP2	Q08AD1	1489 aa		13.74	□□□□□ -0.21
RFX3-209	ENST00000451859	LRRC9	Q6ZRR7	1453 aa		13.74	□□□□□ -0.21
RFX3-209	ENST00000451859	ESF1	Q9H501	851 aa	Known RBP	13.73	□□□□□ -0.21
RFX3-209	ENST00000451859	PLXNC1	O60486	1568 aa		13.72	□□□□□ -0.21
RFX3-209	ENST00000451859	SPDYE2B	A6NHP3	402 aa		13.71	□□□□□ -0.21
RFX3-209	ENST00000451859	SPDYE6	P0CI01	402 aa		13.71	□□□□□ -0.21
RFX3-209	ENST00000451859	SPDYE2	Q495Y8	402 aa		13.71	□□□□□ -0.21
RFX3-209	ENST00000451859	A2M	P01023	1474 aa		13.71	□□□□□ -0.21
RFX3-209	ENST00000451859	MBD5	Q9P267	1494 aa		13.71	□□□□□ -0.21
RFX3-209	ENST00000451859	MROH2A	A6NES4	1674 aa		13.71	□□□□□ -0.21
RFX3-209	ENST00000451859	ATXN8OS	P0DMR3	200 aa		13.7	□□□□□ -0.22
RFX3-209	ENST00000451859	CCDC141	Q6ZP82	1450 aa		13.69	□□□□□ -0.22
RFX3-209	ENST00000451859	KANK4	Q5T7N3	995 aa	Predicted RBP	13.69	□□□□□ -0.22
RFX3-209	ENST00000451859	MAP3K1	Q13233	1512 aa		13.68	□□□□□ -0.22
RFX3-209	ENST00000451859	ARHGEF5	Q12774	1597 aa		13.66	□□□□□ -0.22
RFX3-209	ENST00000451859	UHRF1BP1	Q6BDS2	1440 aa		13.66	□□□□□ -0.22
RFX3-209	ENST00000451859	ILDR1	Q86SU0	546 aa	Predicted RBP	13.66	□□□□□ -0.22
RFX3-209	ENST00000451859	STRC	Q7RTU9	1775 aa		13.66	□□□□□ -0.22
RFX3-209	ENST00000451859	CNTLN	Q9NXG0	1405 aa		13.65	□□□□□ -0.22
RFX3-209	ENST00000451859	GGT6	Q6P531	493 aa		13.65	□□□□□ -0.22
RFX3-209	ENST00000451859	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.64	□□□□□ -0.23
RFX3-209	ENST00000451859	CROCC2	H7BZ55	1655 aa		13.63	□□□□□ -0.23
RFX3-209	ENST00000451859	PRKAR2A	P13861	404 aa	Known RBP	13.63	□□□□□ -0.23
RFX3-209	ENST00000451859	MYOM3	Q5VTT5	1437 aa		13.63	□□□□□ -0.23
RFX3-209	ENST00000451859	MYO3A	Q8NEV4	1616 aa		13.62	□□□□□ -0.23
RFX3-209	ENST00000451859	CFAP65	Q6ZU64	1925 aa	Known RBP	13.62	□□□□□ -0.23
RFX3-209	ENST00000451859	PTPN23	Q9H3S7	1636 aa		13.61	□□□□□ -0.23
RFX3-209	ENST00000451859	MAST1	Q9Y2H9	1570 aa		13.6	□□□□□ -0.23
RFX3-209	ENST00000451859	ZMYM3	Q14202	1370 aa		13.59	□□□□□ -0.23
RFX3-209	ENST00000451859	DHX29	Q7Z478	1369 aa	Known RBP	13.59	□□□□□ -0.23
RFX3-209	ENST00000451859	KIF3B	O15066	747 aa		13.59	□□□□□ -0.23
RFX3-209	ENST00000451859	TSPY4	P0CV99	314 aa		13.59	□□□□□ -0.23
RFX3-209	ENST00000451859	TSPY10	P0CW01	314 aa		13.59	□□□□□ -0.23
RFX3-209	ENST00000451859	MKRN4P	Q13434	485 aa	Predicted RBP	13.59	□□□□□ -0.23
RFX3-209	ENST00000451859	ZNF142	P52746	1687 aa	Predicted RBP	13.59	□□□□□ -0.23
RFX3-209	ENST00000451859	CEP152	O94986	1710 aa		13.59	□□□□□ -0.23
RFX3-209	ENST00000451859	MIA2	Q96PC5	1412 aa		13.58	□□□□□ -0.24
RFX3-209	ENST00000451859	C19orf67	A6NJJ6	358 aa		13.58	□□□□□ -0.24
RFX3-209	ENST00000451859	RSPH4A	Q5TD94	716 aa		13.57	□□□□□ -0.24
RFX3-209	ENST00000451859	NPAT	Q14207	1427 aa		13.56	□□□□□ -0.24
RFX3-209	ENST00000451859	KDM5D	Q9BY66	1539 aa		13.56	□□□□□ -0.24
RFX3-209	ENST00000451859	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.56	□□□□□ -0.24
RFX3-209	ENST00000451859	CAMSAP1	Q5T5Y3	1602 aa		13.56	□□□□□ -0.24
RFX3-209	ENST00000451859	RNF17	Q9BXT8	1623 aa	Known RBP	13.56	□□□□□ -0.24
RFX3-209	ENST00000451859	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.55	□□□□□ -0.24
RFX3-209	ENST00000451859	DNMT1	P26358	1616 aa	Known RBP	13.55	□□□□□ -0.24
RFX3-209	ENST00000451859	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.55	□□□□□ -0.24
RFX3-209	ENST00000451859	CLEC11A	Q9Y240	323 aa		13.55	□□□□□ -0.24
RFX3-209	ENST00000451859	PTPRK	Q15262	1439 aa		13.55	□□□□□ -0.24
RFX3-209	ENST00000451859	SSUH2	Q9Y2M2	353 aa		13.54	□□□□□ -0.24
RFX3-209	ENST00000451859	ZC3H13	Q5T200	1668 aa	Known RBP	13.53	□□□□□ -0.24
RFX3-209	ENST00000451859	FGD6	Q6ZV73	1430 aa		13.53	□□□□□ -0.24
RFX3-209	ENST00000451859	POLR1A	O95602	1720 aa	Predicted RBP	13.51	□□□□□ -0.25
RFX3-209	ENST00000451859	MROH1	Q8NDA8	1641 aa		13.51	□□□□□ -0.25
RFX3-209	ENST00000451859	WASHC2C	Q9Y4E1	1318 aa		13.51	□□□□□ -0.25
RFX3-209	ENST00000451859	DUOX2	Q9NRD8	1548 aa		13.5	□□□□□ -0.25
RFX3-209	ENST00000451859	FAM135A	Q9P2D6	1515 aa		13.5	□□□□□ -0.25
RFX3-209	ENST00000451859	SHANK2	Q9UPX8	1470 aa		13.5	□□□□□ -0.25
RFX3-209	ENST00000451859	ABCC5	O15440	1437 aa		13.5	□□□□□ -0.25
RFX3-209	ENST00000451859	DAPK1	P53355	1430 aa		13.5	□□□□□ -0.25
RFX3-209	ENST00000451859	NCOA1	Q15788	1441 aa		13.5	□□□□□ -0.25
RFX3-209	ENST00000451859	PZP	P20742	1482 aa		13.49	□□□□□ -0.25
RFX3-209	ENST00000451859	TCOF1	Q13428	1488 aa	Known RBP	13.49	□□□□□ -0.25
RFX3-209	ENST00000451859	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.49	□□□□□ -0.25
RFX3-209	ENST00000451859	FBXO41	Q8TF61	875 aa		13.49	□□□□□ -0.25
RFX3-209	ENST00000451859	ABCC3	O15438	1527 aa		13.49	□□□□□ -0.25
RFX3-209	ENST00000451859	KIF15	Q9NS87	1388 aa		13.48	□□□□□ -0.25
RFX3-209	ENST00000451859	GABBR2	O75899	941 aa		13.48	□□□□□ -0.25
RFX3-209	ENST00000451859	TNR	Q92752	1358 aa		13.47	□□□□□ -0.25
RFX3-209	ENST00000451859	FAM50A	Q14320	339 aa	Known RBP	13.47	□□□□□ -0.25
RFX3-209	ENST00000451859	RRP7BP	Q9NSQ0	103 aa		13.47	□□□□□ -0.25
RFX3-209	ENST00000451859	CHIC2	Q9UKJ5	165 aa		13.47	□□□□□ -0.25
RFX3-209	ENST00000451859	A2ML1	A8K2U0	1454 aa		13.47	□□□□□ -0.25
RFX3-209	ENST00000451859	NCKAP5L	Q9HCH0	1330 aa		13.46	□□□□□ -0.25
RFX3-209	ENST00000451859	CERK	Q8TCT0	537 aa		13.46	□□□□□ -0.25
RFX3-209	ENST00000451859	ZNF692	Q9BU19	519 aa	Predicted RBP	13.46	□□□□□ -0.25
RFX3-209	ENST00000451859	PTPRT	O14522	1441 aa		13.46	□□□□□ -0.26
RFX3-209	ENST00000451859	DEPDC5	O75140	1603 aa		13.45	□□□□□ -0.26
RFX3-209	ENST00000451859	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.44	□□□□□ -0.26
RFX3-209	ENST00000451859	PRDM15	P57071	1507 aa	Predicted RBP	13.44	□□□□□ -0.26
RFX3-209	ENST00000451859	PLA2R1	Q13018	1463 aa		13.43	□□□□□ -0.26
RFX3-209	ENST00000451859	ERBIN	Q96RT1	1412 aa		13.43	□□□□□ -0.26
RFX3-209	ENST00000451859	ANKRD30A	Q9BXX3	1397 aa		13.42	□□□□□ -0.26
RFX3-209	ENST00000451859	SPATA31D1	Q6ZQQ2	1576 aa		13.41	□□□□□ -0.26
RFX3-209	ENST00000451859	UGGT1	Q9NYU2	1555 aa		13.41	□□□□□ -0.26
RFX3-209	ENST00000451859	CHADL	Q6NUI6	762 aa		13.41	□□□□□ -0.26
RFX3-209	ENST00000451859	LTBP4	Q8N2S1	1624 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms