RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-209ENST00000451859 NCOA2Q15596 1464 aa13.79□□□□□ -0.2
RFX3-209ENST00000451859 PLEKHH2Q8IVE3 1493 aa13.79□□□□□ -0.2
RFX3-209ENST00000451859 LMTK3Q96Q04 1460 aa13.79□□□□□ -0.2
RFX3-209ENST00000451859 PREX1Q8TCU6 1659 aa13.79□□□□□ -0.2
RFX3-209ENST00000451859 SPAG9O60271 1321 aaKnown RBP13.78□□□□□ -0.2
RFX3-209ENST00000451859 ADGBQ8N7X0 1667 aa13.77□□□□□ -0.21
RFX3-209ENST00000451859 ZNF644Q9H582 1327 aaPredicted RBP13.77□□□□□ -0.21
RFX3-209ENST00000451859 CEBPAP49715 358 aaPredicted RBP13.76□□□□□ -0.21
RFX3-209ENST00000451859 AGLP35573 1532 aa13.75□□□□□ -0.21
RFX3-209ENST00000451859 KIAA1107Q9UPP5 1409 aa13.75□□□□□ -0.21
RFX3-209ENST00000451859 SETD1BQ9UPS6 1966 aaKnown RBP13.75□□□□□ -0.21
RFX3-209ENST00000451859 HSPA2P54652 639 aa13.75□□□□□ -0.21
RFX3-209ENST00000451859 CLTCQ00610 1675 aaKnown RBP13.75□□□□□ -0.21
RFX3-209ENST00000451859 CAMSAP2Q08AD1 1489 aa13.74□□□□□ -0.21
RFX3-209ENST00000451859 LRRC9Q6ZRR7 1453 aa13.74□□□□□ -0.21
RFX3-209ENST00000451859 ESF1Q9H501 851 aaKnown RBP13.73□□□□□ -0.21
RFX3-209ENST00000451859 PLXNC1O60486 1568 aa13.72□□□□□ -0.21
RFX3-209ENST00000451859 SPDYE2BA6NHP3 402 aa13.71□□□□□ -0.21
RFX3-209ENST00000451859 SPDYE6P0CI01 402 aa13.71□□□□□ -0.21
RFX3-209ENST00000451859 SPDYE2Q495Y8 402 aa13.71□□□□□ -0.21
RFX3-209ENST00000451859 A2MP01023 1474 aa13.71□□□□□ -0.21
RFX3-209ENST00000451859 MBD5Q9P267 1494 aa13.71□□□□□ -0.21
RFX3-209ENST00000451859 MROH2AA6NES4 1674 aa13.71□□□□□ -0.21
RFX3-209ENST00000451859 ATXN8OSP0DMR3 200 aa13.7□□□□□ -0.22
RFX3-209ENST00000451859 CCDC141Q6ZP82 1450 aa13.69□□□□□ -0.22
RFX3-209ENST00000451859 KANK4Q5T7N3 995 aaPredicted RBP13.69□□□□□ -0.22
RFX3-209ENST00000451859 MAP3K1Q13233 1512 aa13.68□□□□□ -0.22
RFX3-209ENST00000451859 ARHGEF5Q12774 1597 aa13.66□□□□□ -0.22
RFX3-209ENST00000451859 UHRF1BP1Q6BDS2 1440 aa13.66□□□□□ -0.22
RFX3-209ENST00000451859 ILDR1Q86SU0 546 aaPredicted RBP13.66□□□□□ -0.22
RFX3-209ENST00000451859 STRCQ7RTU9 1775 aa13.66□□□□□ -0.22
RFX3-209ENST00000451859 CNTLNQ9NXG0 1405 aa13.65□□□□□ -0.22
RFX3-209ENST00000451859 GGT6Q6P531 493 aa13.65□□□□□ -0.22
RFX3-209ENST00000451859 RTEL1-TNFRSF6BF6WH68 1400 aa13.64□□□□□ -0.23
RFX3-209ENST00000451859 CROCC2H7BZ55 1655 aa13.63□□□□□ -0.23
RFX3-209ENST00000451859 PRKAR2AP13861 404 aaKnown RBP13.63□□□□□ -0.23
RFX3-209ENST00000451859 MYOM3Q5VTT5 1437 aa13.63□□□□□ -0.23
RFX3-209ENST00000451859 MYO3AQ8NEV4 1616 aa13.62□□□□□ -0.23
RFX3-209ENST00000451859 CFAP65Q6ZU64 1925 aaKnown RBP13.62□□□□□ -0.23
RFX3-209ENST00000451859 PTPN23Q9H3S7 1636 aa13.61□□□□□ -0.23
RFX3-209ENST00000451859 MAST1Q9Y2H9 1570 aa13.6□□□□□ -0.23
RFX3-209ENST00000451859 ZMYM3Q14202 1370 aa13.59□□□□□ -0.23
RFX3-209ENST00000451859 DHX29Q7Z478 1369 aaKnown RBP13.59□□□□□ -0.23
RFX3-209ENST00000451859 KIF3BO15066 747 aa13.59□□□□□ -0.23
RFX3-209ENST00000451859 TSPY4P0CV99 314 aa13.59□□□□□ -0.23
RFX3-209ENST00000451859 TSPY10P0CW01 314 aa13.59□□□□□ -0.23
RFX3-209ENST00000451859 MKRN4PQ13434 485 aaPredicted RBP13.59□□□□□ -0.23
RFX3-209ENST00000451859 ZNF142P52746 1687 aaPredicted RBP13.59□□□□□ -0.23
RFX3-209ENST00000451859 CEP152O94986 1710 aa13.59□□□□□ -0.23
RFX3-209ENST00000451859 MIA2Q96PC5 1412 aa13.58□□□□□ -0.24
RFX3-209ENST00000451859 C19orf67A6NJJ6 358 aa13.58□□□□□ -0.24
RFX3-209ENST00000451859 RSPH4AQ5TD94 716 aa13.57□□□□□ -0.24
RFX3-209ENST00000451859 NPATQ14207 1427 aa13.56□□□□□ -0.24
RFX3-209ENST00000451859 KDM5DQ9BY66 1539 aa13.56□□□□□ -0.24
RFX3-209ENST00000451859 SPDYE1Q8NFV5 336 aaPredicted RBP13.56□□□□□ -0.24
RFX3-209ENST00000451859 CAMSAP1Q5T5Y3 1602 aa13.56□□□□□ -0.24
RFX3-209ENST00000451859 RNF17Q9BXT8 1623 aaKnown RBP13.56□□□□□ -0.24
RFX3-209ENST00000451859 CEP170BQ9Y4F5 1589 aaPredicted RBP13.55□□□□□ -0.24
RFX3-209ENST00000451859 DNMT1P26358 1616 aaKnown RBP13.55□□□□□ -0.24
RFX3-209ENST00000451859 EIF2AK4Q9P2K8 1649 aaKnown RBP13.55□□□□□ -0.24
RFX3-209ENST00000451859 CLEC11AQ9Y240 323 aa13.55□□□□□ -0.24
RFX3-209ENST00000451859 PTPRKQ15262 1439 aa13.55□□□□□ -0.24
RFX3-209ENST00000451859 SSUH2Q9Y2M2 353 aa13.54□□□□□ -0.24
RFX3-209ENST00000451859 ZC3H13Q5T200 1668 aaKnown RBP13.53□□□□□ -0.24
RFX3-209ENST00000451859 FGD6Q6ZV73 1430 aa13.53□□□□□ -0.24
RFX3-209ENST00000451859 POLR1AO95602 1720 aaPredicted RBP13.51□□□□□ -0.25
RFX3-209ENST00000451859 MROH1Q8NDA8 1641 aa13.51□□□□□ -0.25
RFX3-209ENST00000451859 WASHC2CQ9Y4E1 1318 aa13.51□□□□□ -0.25
RFX3-209ENST00000451859 DUOX2Q9NRD8 1548 aa13.5□□□□□ -0.25
RFX3-209ENST00000451859 FAM135AQ9P2D6 1515 aa13.5□□□□□ -0.25
RFX3-209ENST00000451859 SHANK2Q9UPX8 1470 aa13.5□□□□□ -0.25
RFX3-209ENST00000451859 ABCC5O15440 1437 aa13.5□□□□□ -0.25
RFX3-209ENST00000451859 DAPK1P53355 1430 aa13.5□□□□□ -0.25
RFX3-209ENST00000451859 NCOA1Q15788 1441 aa13.5□□□□□ -0.25
RFX3-209ENST00000451859 PZPP20742 1482 aa13.49□□□□□ -0.25
RFX3-209ENST00000451859 TCOF1Q13428 1488 aaKnown RBP13.49□□□□□ -0.25
RFX3-209ENST00000451859 FBXO31Q5XUX0 539 aaPredicted RBP13.49□□□□□ -0.25
RFX3-209ENST00000451859 FBXO41Q8TF61 875 aa13.49□□□□□ -0.25
RFX3-209ENST00000451859 ABCC3O15438 1527 aa13.49□□□□□ -0.25
RFX3-209ENST00000451859 KIF15Q9NS87 1388 aa13.48□□□□□ -0.25
RFX3-209ENST00000451859 GABBR2O75899 941 aa13.48□□□□□ -0.25
RFX3-209ENST00000451859 TNRQ92752 1358 aa13.47□□□□□ -0.25
RFX3-209ENST00000451859 FAM50AQ14320 339 aaKnown RBP13.47□□□□□ -0.25
RFX3-209ENST00000451859 RRP7BPQ9NSQ0 103 aa13.47□□□□□ -0.25
RFX3-209ENST00000451859 CHIC2Q9UKJ5 165 aa13.47□□□□□ -0.25
RFX3-209ENST00000451859 A2ML1A8K2U0 1454 aa13.47□□□□□ -0.25
RFX3-209ENST00000451859 NCKAP5LQ9HCH0 1330 aa13.46□□□□□ -0.25
RFX3-209ENST00000451859 CERKQ8TCT0 537 aa13.46□□□□□ -0.25
RFX3-209ENST00000451859 ZNF692Q9BU19 519 aaPredicted RBP13.46□□□□□ -0.25
RFX3-209ENST00000451859 PTPRTO14522 1441 aa13.46□□□□□ -0.26
RFX3-209ENST00000451859 DEPDC5O75140 1603 aa13.45□□□□□ -0.26
RFX3-209ENST00000451859 PPARGC1BQ86YN6 1023 aaKnown RBP13.44□□□□□ -0.26
RFX3-209ENST00000451859 PRDM15P57071 1507 aaPredicted RBP13.44□□□□□ -0.26
RFX3-209ENST00000451859 PLA2R1Q13018 1463 aa13.43□□□□□ -0.26
RFX3-209ENST00000451859 ERBINQ96RT1 1412 aa13.43□□□□□ -0.26
RFX3-209ENST00000451859 ANKRD30AQ9BXX3 1397 aa13.42□□□□□ -0.26
RFX3-209ENST00000451859 SPATA31D1Q6ZQQ2 1576 aa13.41□□□□□ -0.26
RFX3-209ENST00000451859 UGGT1Q9NYU2 1555 aa13.41□□□□□ -0.26
RFX3-209ENST00000451859 CHADLQ6NUI6 762 aa13.41□□□□□ -0.26
RFX3-209ENST00000451859 LTBP4Q8N2S1 1624 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 820.4 ms