RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 SSR1P43307 286 aaKnown RBP2.76□□□□□ -1.97
USP53-202ENST00000450251 MNS1Q8NEH6 495 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 ZNF622Q969S3 477 aaKnown RBP eCLIP2.76□□□□□ -1.97
USP53-202ENST00000450251 KRTAP17-1Q9BYP8 105 aa2.76□□□□□ -1.97
USP53-202ENST00000450251 PES1O00541 588 aaKnown RBP2.75□□□□□ -1.97
USP53-202ENST00000450251 CLCN1P35523 988 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 FAM193AP78312 1265 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 NFKBIBQ15653 356 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 C14orf37Q86TY3 774 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 ACBD3Q9H3P7 528 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 ARGLU1Q9NWB6 273 aaPredicted RBP2.75□□□□□ -1.97
USP53-202ENST00000450251 WASHC2CQ9Y4E1 1318 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 FRAT1Q92837 279 aaPredicted RBP2.75□□□□□ -1.97
USP53-202ENST00000450251 WASHC2AQ641Q2 1341 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 WDR43Q15061 677 aaKnown RBP eCLIP2.75□□□□□ -1.97
USP53-202ENST00000450251 BBXQ8WY36 941 aaPredicted RBP2.75□□□□□ -1.97
USP53-202ENST00000450251 PDE4AP27815 886 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 FAM107BQ9H098 131 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 CCDC9Q9Y3X0 531 aaKnown RBP2.75□□□□□ -1.97
USP53-202ENST00000450251 NINLQ9Y2I6 1382 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 UTP14CQ5TAP6 766 aaKnown RBP2.75□□□□□ -1.97
USP53-202ENST00000450251 FAM13BQ9NYF5 915 aa2.75□□□□□ -1.97
USP53-202ENST00000450251 C1QBPQ07021 282 aaKnown RBP2.74□□□□□ -1.97
USP53-202ENST00000450251 ZRSR1Q15695 479 aaKnown RBP2.74□□□□□ -1.97
USP53-202ENST00000450251 SASS6Q6UVJ0 657 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 PMFBP1Q8TBY8 1022 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 CHMP5Q9NZZ3 219 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 DNMBPQ6XZF7 1577 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 NUP160Q12769 1436 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 SETD5Q9C0A6 1442 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 CLSTN1O94985 981 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 DEF6Q9H4E7 631 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 NAP1L2Q9ULW6 460 aaPredicted RBP2.74□□□□□ -1.97
USP53-202ENST00000450251 FHAD1B1AJZ9 1412 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 MAPKBP1O60336 1514 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 GOLGA6L4A6NEF3 574 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 FTSJ3Q8IY81 847 aaKnown RBP2.74□□□□□ -1.97
USP53-202ENST00000450251 SMG6Q86US8 1419 aaKnown RBP2.74□□□□□ -1.97
USP53-202ENST00000450251 AK7Q96M32 723 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 BRPF3Q9ULD4 1205 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 ATP1B4Q9UN42 357 aaPredicted RBP2.74□□□□□ -1.97
USP53-202ENST00000450251 CCNB3Q8WWL7 1395 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 CCDC144AA2RUR9 1427 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 PLEKHH2Q8IVE3 1493 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 SHROOM2Q13796 1616 aa2.74□□□□□ -1.97
USP53-202ENST00000450251 TPM4P67936 248 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 ZNF219Q9P2Y4 722 aaPredicted RBP2.73□□□□□ -1.97
USP53-202ENST00000450251 RDXP35241 583 aaKnown RBP2.73□□□□□ -1.97
USP53-202ENST00000450251 NBPF1Q3BBV0 1214 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 OSCARQ8IYS5 282 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 GRWD1Q9BQ67 446 aaKnown RBP eCLIP2.73□□□□□ -1.97
USP53-202ENST00000450251 ESPNB1AK53 854 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 CCP110O43303 1012 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 MCCP23508 829 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 MNX1P50219 401 aaPredicted RBP2.73□□□□□ -1.97
USP53-202ENST00000450251 HAP1P54257 671 aaPredicted RBP2.73□□□□□ -1.97
USP53-202ENST00000450251 HS1BP3Q53T59 392 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 ZSCAN30Q86W11 494 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 PRIMPOLQ96LW4 560 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 TIGD1Q96MW7 591 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 ANKRD30AQ9BXX3 1397 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 UQCRHLA0A096LP55 91 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 UQCRHP07919 91 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 RALBP1Q15311 655 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 KIAA1211Q6ZU35 1233 aa2.73□□□□□ -1.97
USP53-202ENST00000450251 CCDC94Q9BW85 323 aaPredicted RBP2.73□□□□□ -1.97
USP53-202ENST00000450251 CGNQ9P2M7 1197 aaKnown RBP2.73□□□□□ -1.97
USP53-202ENST00000450251 PATL2C9JE40 543 aaKnown RBP2.72□□□□□ -1.97
USP53-202ENST00000450251 NEFHP12036 1026 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 PAIP2Q9BPZ3 127 aaKnown RBP2.72□□□□□ -1.97
USP53-202ENST00000450251 RCAN3Q9UKA8 241 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 KNSTRNQ9Y448 316 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 TARBP1Q13395 1621 aaKnown RBP2.72□□□□□ -1.97
USP53-202ENST00000450251 VGFO15240 615 aaPredicted RBP2.72□□□□□ -1.97
USP53-202ENST00000450251 CNTLNQ9NXG0 1405 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 DHX57Q6P158 1386 aaKnown RBP2.72□□□□□ -1.97
USP53-202ENST00000450251 PLEKHG5O94827 1062 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 LIG1P18858 919 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 EVX2Q03828 476 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 LEKR1Q6ZMV7 388 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 ARHGEF11O15085 1522 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 GLI2P10070 1586 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 ABCA10Q8WWZ4 1543 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 TPM1P09493 284 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 NASPP49321 788 aaPredicted RBP2.72□□□□□ -1.97
USP53-202ENST00000450251 NGEFQ8N5V2 710 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 ERCC4Q92889 916 aaPredicted RBP2.72□□□□□ -1.97
USP53-202ENST00000450251 SLKQ9H2G2 1235 aaPredicted RBP2.72□□□□□ -1.97
USP53-202ENST00000450251 CIZ1Q9ULV3 898 aaPredicted RBP2.72□□□□□ -1.97
USP53-202ENST00000450251 R3HCC1Q9Y3T6 440 aaKnown RBP2.72□□□□□ -1.97
USP53-202ENST00000450251 KIF21BO75037 1637 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 SETSIPP0DME0 302 aa2.72□□□□□ -1.97
USP53-202ENST00000450251 DRC7Q8IY82 874 aa2.71□□□□□ -1.98
USP53-202ENST00000450251 DDX11Q96FC9 970 aa2.71□□□□□ -1.98
USP53-202ENST00000450251 GRPEL1Q9HAV7 217 aa2.71□□□□□ -1.98
USP53-202ENST00000450251 FANCD2Q9BXW9 1451 aa2.71□□□□□ -1.98
USP53-202ENST00000450251 RRP1P56182 461 aaKnown RBP2.71□□□□□ -1.98
USP53-202ENST00000450251 RABEP1Q15276 862 aa2.71□□□□□ -1.98
USP53-202ENST00000450251 CDCA8Q53HL2 280 aa2.71□□□□□ -1.98
USP53-202ENST00000450251 TXLNBQ8N3L3 684 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms