RNA–Protein interactions for RNA: ENST00000449544.5

HCG18-238, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 4,262 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-238	ENST00000449544	AMPH	P49418	695 aa		11.44	□□□□□ -0.58
HCG18-238	ENST00000449544	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
HCG18-238	ENST00000449544	FAM135A	Q9P2D6	1515 aa		11.44	□□□□□ -0.58
HCG18-238	ENST00000449544	STRN4	Q9NRL3	753 aa		11.44	□□□□□ -0.58
HCG18-238	ENST00000449544	TSPOAP1	O95153	1857 aa		11.44	□□□□□ -0.58
HCG18-238	ENST00000449544	TERF2IP	Q9NYB0	399 aa		11.44	□□□□□ -0.58
HCG18-238	ENST00000449544	PBRM1	Q86U86	1689 aa		11.43	□□□□□ -0.58
HCG18-238	ENST00000449544	ZMYM3	Q14202	1370 aa		11.43	□□□□□ -0.58
HCG18-238	ENST00000449544	IDI1	Q13907	227 aa		11.43	□□□□□ -0.58
HCG18-238	ENST00000449544	CFAP53	Q96M91	514 aa		11.43	□□□□□ -0.58
HCG18-238	ENST00000449544	TMF1	P82094	1093 aa		11.43	□□□□□ -0.58
HCG18-238	ENST00000449544	SYTL4	Q96C24	671 aa	Predicted RBP	11.43	□□□□□ -0.58
HCG18-238	ENST00000449544	KIF14	Q15058	1648 aa		11.43	□□□□□ -0.58
HCG18-238	ENST00000449544	XPC	Q01831	940 aa	Predicted RBP	11.42	□□□□□ -0.58
HCG18-238	ENST00000449544	TMEM132E	Q6IEE7	984 aa		11.42	□□□□□ -0.58
HCG18-238	ENST00000449544	DHX57	Q6P158	1386 aa	Known RBP	11.42	□□□□□ -0.58
HCG18-238	ENST00000449544	PRDM11	Q9NQV5	511 aa		11.42	□□□□□ -0.58
HCG18-238	ENST00000449544	UGGT2	Q9NYU1	1516 aa		11.42	□□□□□ -0.58
HCG18-238	ENST00000449544	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.42	□□□□□ -0.58	1e-6	■■■■□ 21.3
HCG18-238	ENST00000449544	SIN3A	Q96ST3	1273 aa		11.42	□□□□□ -0.58
HCG18-238	ENST00000449544	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
HCG18-238	ENST00000449544	AMOTL2	Q9Y2J4	779 aa		11.41	□□□□□ -0.58
HCG18-238	ENST00000449544	CNTLN	Q9NXG0	1405 aa		11.41	□□□□□ -0.58
HCG18-238	ENST00000449544	KIF21B	O75037	1637 aa		11.41	□□□□□ -0.58
HCG18-238	ENST00000449544	BCL11A	Q9H165	835 aa		11.41	□□□□□ -0.58
HCG18-238	ENST00000449544	DHX29	Q7Z478	1369 aa	Known RBP	11.41	□□□□□ -0.58
HCG18-238	ENST00000449544	PDE3B	Q13370	1112 aa		11.41	□□□□□ -0.58
HCG18-238	ENST00000449544	NUTM2G	Q5VZR2	741 aa		11.41	□□□□□ -0.58
HCG18-238	ENST00000449544	PMFBP1	Q8TBY8	1022 aa		11.4	□□□□□ -0.58
HCG18-238	ENST00000449544	ATP10A	O60312	1499 aa		11.4	□□□□□ -0.58
HCG18-238	ENST00000449544	FGD6	Q6ZV73	1430 aa		11.4	□□□□□ -0.58
HCG18-238	ENST00000449544	CCDC141	Q6ZP82	1450 aa		11.4	□□□□□ -0.58
HCG18-238	ENST00000449544	SETD5	Q9C0A6	1442 aa		11.4	□□□□□ -0.58
HCG18-238	ENST00000449544	CERK	Q8TCT0	537 aa		11.4	□□□□□ -0.59
HCG18-238	ENST00000449544	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.39	□□□□□ -0.59
HCG18-238	ENST00000449544	ABCA5	Q8WWZ7	1642 aa		11.39	□□□□□ -0.59
HCG18-238	ENST00000449544	C8orf37	Q96NL8	207 aa		11.39	□□□□□ -0.59
HCG18-238	ENST00000449544	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.39	□□□□□ -0.59
HCG18-238	ENST00000449544	KIAA0556	O60303	1618 aa		11.38	□□□□□ -0.59
HCG18-238	ENST00000449544	NEO1	Q92859	1461 aa		11.38	□□□□□ -0.59
HCG18-238	ENST00000449544	FOXO3	O43524	673 aa		11.37	□□□□□ -0.59
HCG18-238	ENST00000449544	NUDC	Q9Y266	331 aa		11.37	□□□□□ -0.59
HCG18-238	ENST00000449544	A2M	P01023	1474 aa		11.37	□□□□□ -0.59
HCG18-238	ENST00000449544	ANP32C	O43423	234 aa		11.37	□□□□□ -0.59
HCG18-238	ENST00000449544	NLRP6	P59044	892 aa		11.37	□□□□□ -0.59
HCG18-238	ENST00000449544	NUP153	P49790	1475 aa	Known RBP	11.36	□□□□□ -0.59
HCG18-238	ENST00000449544	LRRC9	Q6ZRR7	1453 aa		11.36	□□□□□ -0.59
HCG18-238	ENST00000449544	EIF3A	Q14152	1382 aa	Known RBP	11.36	□□□□□ -0.59
HCG18-238	ENST00000449544	ABTB2	Q8N961	1025 aa		11.36	□□□□□ -0.59
HCG18-238	ENST00000449544	NLRP2	Q9NX02	1062 aa		11.36	□□□□□ -0.59
HCG18-238	ENST00000449544	U2SURP	O15042	1029 aa	Known RBP	11.36	□□□□□ -0.59
HCG18-238	ENST00000449544	WDR43	Q15061	677 aa	Known RBP eCLIP	11.36	□□□□□ -0.59
HCG18-238	ENST00000449544	DISP1	Q96F81	1524 aa		11.36	□□□□□ -0.59
HCG18-238	ENST00000449544	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.35	□□□□□ -0.59
HCG18-238	ENST00000449544	RAPGEF6	Q8TEU7	1601 aa		11.35	□□□□□ -0.59
HCG18-238	ENST00000449544	UHRF1BP1L	A0JNW5	1464 aa		11.35	□□□□□ -0.59
HCG18-238	ENST00000449544	EHBP1L1	Q8N3D4	1523 aa		11.35	□□□□□ -0.59
HCG18-238	ENST00000449544	ERCC6L2	Q5T890	1561 aa		11.35	□□□□□ -0.59
HCG18-238	ENST00000449544	ROCK2	O75116	1388 aa	Known RBP	11.35	□□□□□ -0.59
HCG18-238	ENST00000449544	MIA2	Q96PC5	1412 aa		11.35	□□□□□ -0.59
HCG18-238	ENST00000449544	EVC2	Q86UK5	1308 aa		11.34	□□□□□ -0.59
HCG18-238	ENST00000449544	TRAPPC8	Q9Y2L5	1435 aa		11.34	□□□□□ -0.59
HCG18-238	ENST00000449544	TMX4	Q9H1E5	349 aa	Predicted RBP	11.33	□□□□□ -0.6
HCG18-238	ENST00000449544	PELP1	Q8IZL8	1130 aa	Known RBP	11.33	□□□□□ -0.6
HCG18-238	ENST00000449544	C19orf44	Q9H6X5	657 aa		11.33	□□□□□ -0.6
HCG18-238	ENST00000449544	CANX	P27824	592 aa	Known RBP	11.33	□□□□□ -0.6
HCG18-238	ENST00000449544	PRAM1	Q96QH2	718 aa		11.33	□□□□□ -0.6
HCG18-238	ENST00000449544	MORC1	Q86VD1	984 aa		11.32	□□□□□ -0.6
HCG18-238	ENST00000449544	CFAP70	Q5T0N1	1121 aa		11.32	□□□□□ -0.6
HCG18-238	ENST00000449544	TOM1L2	Q6ZVM7	507 aa		11.32	□□□□□ -0.6
HCG18-238	ENST00000449544	LRRC59	Q96AG4	307 aa	Known RBP	11.32	□□□□□ -0.6
HCG18-238	ENST00000449544	COG3	Q96JB2	828 aa		11.32	□□□□□ -0.6
HCG18-238	ENST00000449544	KDM5B	Q9UGL1	1544 aa		11.31	□□□□□ -0.6
HCG18-238	ENST00000449544	NLRP13	Q86W25	1043 aa		11.3	□□□□□ -0.6
HCG18-238	ENST00000449544	STAC3	Q96MF2	364 aa		11.3	□□□□□ -0.6
HCG18-238	ENST00000449544	ZC3H6	P61129	1189 aa	Known RBP	11.3	□□□□□ -0.6
HCG18-238	ENST00000449544	MAPK8IP3	Q9UPT6	1336 aa		11.3	□□□□□ -0.6
HCG18-238	ENST00000449544	YEATS2	Q9ULM3	1422 aa		11.3	□□□□□ -0.6
HCG18-238	ENST00000449544	ZFYVE16	Q7Z3T8	1539 aa		11.29	□□□□□ -0.6
HCG18-238	ENST00000449544	RAPGEF4	Q8WZA2	1011 aa		11.29	□□□□□ -0.6
HCG18-238	ENST00000449544	RAB3GAP2	Q9H2M9	1393 aa		11.29	□□□□□ -0.6
HCG18-238	ENST00000449544	YTHDC1	Q96MU7	727 aa	Known RBP	11.29	□□□□□ -0.6
HCG18-238	ENST00000449544	RPGRIP1L	Q68CZ1	1315 aa		11.29	□□□□□ -0.6
HCG18-238	ENST00000449544	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.28	□□□□□ -0.6
HCG18-238	ENST00000449544	GTF2E1	P29083	439 aa	Predicted RBP	11.28	□□□□□ -0.6
HCG18-238	ENST00000449544	RTF1	Q92541	710 aa	Known RBP	11.28	□□□□□ -0.6
HCG18-238	ENST00000449544	LRPPRC	P42704	1394 aa	Known RBP	11.28	□□□□□ -0.6
HCG18-238	ENST00000449544	KDM4F	A0A1W2PPD8	638 aa		11.28	□□□□□ -0.6
HCG18-238	ENST00000449544	SALL2	Q9Y467	1007 aa	Predicted RBP	11.27	□□□□□ -0.6
HCG18-238	ENST00000449544	L3MBTL2	Q969R5	705 aa		11.27	□□□□□ -0.61
HCG18-238	ENST00000449544	PHF8	Q9UPP1	1060 aa		11.27	□□□□□ -0.61
HCG18-238	ENST00000449544	CENPJ	Q9HC77	1338 aa	Predicted RBP	11.27	□□□□□ -0.61
HCG18-238	ENST00000449544	KCNA6	P17658	529 aa		11.26	□□□□□ -0.61
HCG18-238	ENST00000449544	FBXO41	Q8TF61	875 aa		11.26	□□□□□ -0.61
HCG18-238	ENST00000449544	SLAIN2	Q9P270	581 aa		11.26	□□□□□ -0.61
HCG18-238	ENST00000449544	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.26	□□□□□ -0.61
HCG18-238	ENST00000449544	NPHP3	Q7Z494	1330 aa		11.26	□□□□□ -0.61
HCG18-238	ENST00000449544	CAMSAP2	Q08AD1	1489 aa		11.26	□□□□□ -0.61
HCG18-238	ENST00000449544	KIAA1107	Q9UPP5	1409 aa		11.25	□□□□□ -0.61
HCG18-238	ENST00000449544	KRT28	Q7Z3Y7	464 aa		11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms