RNA–Protein interactions for RNA: ENST00000448404.5

SF1-211, Transcript of splicing factor 1, humanhuman

TSL 1 (best)

Gene SF1, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-211ENST00000448404 CCDC144AA2RUR9 1427 aa20.36■□□□□ 0.85
SF1-211ENST00000448404 ZCCHC11Q5TAX3 1644 aaKnown RBP20.35■□□□□ 0.85
SF1-211ENST00000448404 DHX29Q7Z478 1369 aaKnown RBP20.35■□□□□ 0.85
SF1-211ENST00000448404 TSHZ2Q9NRE2 1034 aa20.34■□□□□ 0.85
SF1-211ENST00000448404 RSPH4AQ5TD94 716 aa20.34■□□□□ 0.85
SF1-211ENST00000448404 CLASP1Q7Z460 1538 aa20.33■□□□□ 0.85
SF1-211ENST00000448404 PLCH2O75038 1416 aa20.32■□□□□ 0.84
SF1-211ENST00000448404 KDM5CP41229 1560 aa20.32■□□□□ 0.84
SF1-211ENST00000448404 SPAG9O60271 1321 aaKnown RBP20.31■□□□□ 0.84
SF1-211ENST00000448404 MYO5CQ9NQX4 1742 aa20.3■□□□□ 0.84
SF1-211ENST00000448404 KDM5DQ9BY66 1539 aa20.29■□□□□ 0.84
SF1-211ENST00000448404 RALGAPBQ86X10 1494 aa20.29■□□□□ 0.84
SF1-211ENST00000448404 SALL2Q9Y467 1007 aaPredicted RBP20.28■□□□□ 0.84
SF1-211ENST00000448404 UHRF1BP1Q6BDS2 1440 aa20.28■□□□□ 0.84
SF1-211ENST00000448404 A2MP01023 1474 aa20.26■□□□□ 0.83
SF1-211ENST00000448404 KIF3BO15066 747 aa20.24■□□□□ 0.83
SF1-211ENST00000448404 SENP3Q9H4L4 574 aaPredicted RBP20.24■□□□□ 0.83
SF1-211ENST00000448404 PRAG1Q86YV5 1406 aa20.23■□□□□ 0.83
SF1-211ENST00000448404 SCAPERQ9BY12 1400 aa20.22■□□□□ 0.83
SF1-211ENST00000448404 BCL11AQ9H165 835 aa20.21■□□□□ 0.83
SF1-211ENST00000448404 CC2D1BQ5T0F9 858 aaKnown RBP20.21■□□□□ 0.83
SF1-211ENST00000448404 TMC1Q8TDI8 760 aa20.2■□□□□ 0.82
SF1-211ENST00000448404 ABCC1P33527 1531 aa20.2■□□□□ 0.82
SF1-211ENST00000448404 ANP32EQ9BTT0 268 aa20.2■□□□□ 0.82
SF1-211ENST00000448404 DISP3Q9P2K9 1392 aa20.19■□□□□ 0.82
SF1-211ENST00000448404 DUOX2Q9NRD8 1548 aa20.17■□□□□ 0.82
SF1-211ENST00000448404 UHRF1BP1LA0JNW5 1464 aa20.17■□□□□ 0.82
SF1-211ENST00000448404 FANCAO15360 1455 aa20.16■□□□□ 0.82
SF1-211ENST00000448404 UNC13BO14795 1591 aa20.16■□□□□ 0.82
SF1-211ENST00000448404 MAST1Q9Y2H9 1570 aa20.16■□□□□ 0.82
SF1-211ENST00000448404 TESK2Q96S53 571 aa20.16■□□□□ 0.82
SF1-211ENST00000448404 WDR7Q9Y4E6 1490 aa20.16■□□□□ 0.82
SF1-211ENST00000448404 ASXL2Q76L83 1435 aa20.14■□□□□ 0.82
SF1-211ENST00000448404 ZBED9Q6R2W3 1325 aa20.14■□□□□ 0.82
SF1-211ENST00000448404 PNISRQ8TF01 805 aaKnown RBP20.14■□□□□ 0.81
SF1-211ENST00000448404 POLR1AO95602 1720 aaPredicted RBP20.13■□□□□ 0.81
SF1-211ENST00000448404 PLXNC1O60486 1568 aa20.13■□□□□ 0.81
SF1-211ENST00000448404 ERBINQ96RT1 1412 aa20.12■□□□□ 0.81
SF1-211ENST00000448404 B4GALNT3Q6L9W6 998 aa20.12■□□□□ 0.81
SF1-211ENST00000448404 PANK3Q9H999 370 aa20.12■□□□□ 0.81
SF1-211ENST00000448404 IQGAP3Q86VI3 1631 aa20.12■□□□□ 0.81
SF1-211ENST00000448404 OSCARQ8IYS5 282 aa20.11■□□□□ 0.81
SF1-211ENST00000448404 ADGRL1O94910 1474 aa20.1■□□□□ 0.81
SF1-211ENST00000448404 TRPM1Q7Z4N2 1603 aa20.1■□□□□ 0.81
SF1-211ENST00000448404 CHGAP10645 457 aaKnown RBP20.1■□□□□ 0.81
SF1-211ENST00000448404 UGGT1Q9NYU2 1555 aa20.1■□□□□ 0.81
SF1-211ENST00000448404 ZFYVE16Q7Z3T8 1539 aa20.09■□□□□ 0.81
SF1-211ENST00000448404 GGT6Q6P531 493 aa20.09■□□□□ 0.81
SF1-211ENST00000448404 PER1O15534 1290 aaPredicted RBP20.07■□□□□ 0.8
SF1-211ENST00000448404 RAPGEF3O95398 923 aa20.06■□□□□ 0.8
SF1-211ENST00000448404 NUTM2DQ5VT03 806 aaPredicted RBP20.06■□□□□ 0.8
SF1-211ENST00000448404 ATP10AO60312 1499 aa20.06■□□□□ 0.8
SF1-211ENST00000448404 NPM1P06748 294 aaKnown RBP eCLIP20.06■□□□□ 0.8
SF1-211ENST00000448404 ARID4BQ4LE39 1312 aaPredicted RBP20.05■□□□□ 0.8
SF1-211ENST00000448404 CFAP70Q5T0N1 1121 aa20.05■□□□□ 0.8
SF1-211ENST00000448404 MAGI2Q86UL8 1455 aa20.05■□□□□ 0.8
SF1-211ENST00000448404 E9PCH4 1651 aa20.05■□□□□ 0.8
SF1-211ENST00000448404 MYBBP1AQ9BQG0 1328 aaKnown RBP20.03■□□□□ 0.8
SF1-211ENST00000448404 ATP7AQ04656 1500 aa20.03■□□□□ 0.8
SF1-211ENST00000448404 ADGRF5Q8IZF2 1346 aa20.02■□□□□ 0.8
SF1-211ENST00000448404 GPRASP1Q5JY77 1395 aa20.02■□□□□ 0.79
SF1-211ENST00000448404 TMF1P82094 1093 aa20■□□□□ 0.79
SF1-211ENST00000448404 RBM19Q9Y4C8 960 aaKnown RBP20■□□□□ 0.79
SF1-211ENST00000448404 CFAP65Q6ZU64 1925 aaKnown RBP20■□□□□ 0.79
SF1-211ENST00000448404 KTN1Q86UP2 1357 aaKnown RBP19.99■□□□□ 0.79
SF1-211ENST00000448404 CDCA7LQ96GN5 454 aa19.98■□□□□ 0.79
SF1-211ENST00000448404 CLTCL1P53675 1640 aa19.98■□□□□ 0.79
SF1-211ENST00000448404 COL17A1Q9UMD9 1497 aaPredicted RBP19.97■□□□□ 0.79
SF1-211ENST00000448404 RALBP1Q15311 655 aa19.97■□□□□ 0.79
SF1-211ENST00000448404 RTEL1-TNFRSF6BF6WH68 1400 aa19.97■□□□□ 0.79
SF1-211ENST00000448404 PRDM15P57071 1507 aaPredicted RBP19.96■□□□□ 0.79
SF1-211ENST00000448404 NUDCQ9Y266 331 aa19.96■□□□□ 0.79
SF1-211ENST00000448404 CYB5RLQ6IPT4 315 aa19.96■□□□□ 0.79
SF1-211ENST00000448404 KANK1Q14678 1352 aa19.96■□□□□ 0.79
SF1-211ENST00000448404 ABCA9Q8IUA7 1624 aa19.95■□□□□ 0.78
SF1-211ENST00000448404 NLRP13Q86W25 1043 aa19.95■□□□□ 0.78
SF1-211ENST00000448404 CD109Q6YHK3 1445 aa19.95■□□□□ 0.78
SF1-211ENST00000448404 PARD3Q8TEW0 1356 aa19.93■□□□□ 0.78
SF1-211ENST00000448404 TMEM132EQ6IEE7 984 aa19.93■□□□□ 0.78
SF1-211ENST00000448404 PPP4R2Q9NY27 417 aa19.92■□□□□ 0.78
SF1-211ENST00000448404 BRD4O60885 1362 aaPredicted RBP19.92■□□□□ 0.78
SF1-211ENST00000448404 INO80Q9ULG1 1556 aaPredicted RBP19.92■□□□□ 0.78
SF1-211ENST00000448404 PTPRTO14522 1441 aa19.91■□□□□ 0.78
SF1-211ENST00000448404 TRPM2O94759 1503 aa19.9■□□□□ 0.78
SF1-211ENST00000448404 LRPPRCP42704 1394 aaKnown RBP19.9■□□□□ 0.78
SF1-211ENST00000448404 MADDQ8WXG6 1647 aa19.89■□□□□ 0.77
SF1-211ENST00000448404 TRAK1Q9UPV9 953 aa19.89■□□□□ 0.77
SF1-211ENST00000448404 SMG6Q86US8 1419 aaKnown RBP19.89■□□□□ 0.77
SF1-211ENST00000448404 MROH1Q8NDA8 1641 aa19.88■□□□□ 0.77
SF1-211ENST00000448404 SPHKAPQ2M3C7 1700 aa19.88■□□□□ 0.77
SF1-211ENST00000448404 KIDINS220Q9ULH0 1771 aa19.88■□□□□ 0.77
SF1-211ENST00000448404 KNSTRNQ9Y448 316 aa19.88■□□□□ 0.77
SF1-211ENST00000448404 ARAP3Q8WWN8 1544 aa19.87■□□□□ 0.77
SF1-211ENST00000448404 WASHC2CQ9Y4E1 1318 aa19.87■□□□□ 0.77
SF1-211ENST00000448404 ADAMTS8Q9UP79 889 aa19.86■□□□□ 0.77
SF1-211ENST00000448404 SAFB2Q14151 953 aaKnown RBP eCLIP19.85■□□□□ 0.77
SF1-211ENST00000448404 PLIN1O60240 522 aa19.85■□□□□ 0.77
SF1-211ENST00000448404 TNNT2P45379 298 aaPredicted RBP19.84■□□□□ 0.77
SF1-211ENST00000448404 DEPDC5O75140 1603 aa19.84■□□□□ 0.77
SF1-211ENST00000448404 NOS1P29475 1434 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms