RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 GTF2E1P29083 439 aaPredicted RBP10.74□□□□□ -0.69
PTPN3-204ENST00000446349 KIAA2012Q0VF49 1180 aa10.74□□□□□ -0.69
PTPN3-204ENST00000446349 MIA2Q96PC5 1412 aa10.74□□□□□ -0.69
PTPN3-204ENST00000446349 COG3Q96JB2 828 aa10.74□□□□□ -0.69
PTPN3-204ENST00000446349 ISY1Q9ULR0 285 aaKnown RBP10.74□□□□□ -0.69
PTPN3-204ENST00000446349 CSPP1Q1MSJ5 1256 aa10.73□□□□□ -0.69
PTPN3-204ENST00000446349 POGZQ7Z3K3 1410 aa10.73□□□□□ -0.69
PTPN3-204ENST00000446349 KIF15Q9NS87 1388 aa10.72□□□□□ -0.69
PTPN3-204ENST00000446349 HSPA5P11021 654 aaKnown RBP10.72□□□□□ -0.69
PTPN3-204ENST00000446349 FAM69CQ0P6D2 419 aa10.72□□□□□ -0.69
PTPN3-204ENST00000446349 MEX3CQ5U5Q3 659 aaKnown RBP10.72□□□□□ -0.69
PTPN3-204ENST00000446349 NLRP13Q86W25 1043 aa10.72□□□□□ -0.69
PTPN3-204ENST00000446349 HSP90B1P14625 803 aaKnown RBP10.72□□□□□ -0.69
PTPN3-204ENST00000446349 EFCAB5A4FU69 1503 aa10.72□□□□□ -0.69
PTPN3-204ENST00000446349 ATF3P18847 181 aa10.71□□□□□ -0.69
PTPN3-204ENST00000446349 AMOTL1Q8IY63 956 aa10.7□□□□□ -0.7
PTPN3-204ENST00000446349 SCAPERQ9BY12 1400 aa10.7□□□□□ -0.7
PTPN3-204ENST00000446349 DHX57Q6P158 1386 aaKnown RBP10.7□□□□□ -0.7
PTPN3-204ENST00000446349 SUPT16HQ9Y5B9 1047 aaKnown RBP10.7□□□□□ -0.7
PTPN3-204ENST00000446349 TPM4P67936 248 aa10.7□□□□□ -0.7
PTPN3-204ENST00000446349 RRBP1Q9P2E9 1410 aaKnown RBP10.7□□□□□ -0.7
PTPN3-204ENST00000446349 ERICH3Q5RHP9 1530 aa10.69□□□□□ -0.7
PTPN3-204ENST00000446349 SYAP1Q96A49 352 aaPredicted RBP10.69□□□□□ -0.7
PTPN3-204ENST00000446349 NOL10Q9BSC4 688 aaKnown RBP10.69□□□□□ -0.7
PTPN3-204ENST00000446349 ROCK1Q13464 1354 aa10.69□□□□□ -0.7
PTPN3-204ENST00000446349 NEXNQ0ZGT2 675 aa10.68□□□□□ -0.7
PTPN3-204ENST00000446349 FYCO1Q9BQS8 1478 aa10.68□□□□□ -0.7
PTPN3-204ENST00000446349 DNTTIP2Q5QJE6 756 aaKnown RBP10.68□□□□□ -0.7
PTPN3-204ENST00000446349 ZNF330Q9Y3S2 320 aaPredicted RBP10.68□□□□□ -0.7
PTPN3-204ENST00000446349 ARHGAP5Q13017 1502 aa10.68□□□□□ -0.7
PTPN3-204ENST00000446349 CC2D2AQ9P2K1 1620 aa10.68□□□□□ -0.7
PTPN3-204ENST00000446349 PSME1Q06323 249 aa10.68□□□□□ -0.7
PTPN3-204ENST00000446349 TTC5Q8N0Z6 440 aa10.67□□□□□ -0.7
PTPN3-204ENST00000446349 TULP1O00294 542 aaPredicted RBP10.67□□□□□ -0.7
PTPN3-204ENST00000446349 SMC4Q9NTJ3 1288 aa10.67□□□□□ -0.7
PTPN3-204ENST00000446349 LAMC3Q9Y6N6 1575 aa10.67□□□□□ -0.7
PTPN3-204ENST00000446349 DDX58O95786 925 aaKnown RBP10.67□□□□□ -0.7
PTPN3-204ENST00000446349 TEFQ10587 303 aa10.67□□□□□ -0.7
PTPN3-204ENST00000446349 CHMP3Q9Y3E7 222 aa10.67□□□□□ -0.7
PTPN3-204ENST00000446349 RGS3P49796 1198 aa10.67□□□□□ -0.7
PTPN3-204ENST00000446349 FRAT2O75474 233 aaPredicted RBP10.66□□□□□ -0.7
PTPN3-204ENST00000446349 USP35Q9P2H5 1018 aa10.66□□□□□ -0.7
PTPN3-204ENST00000446349 CLSTN1O94985 981 aa10.66□□□□□ -0.7
PTPN3-204ENST00000446349 GBP4Q96PP9 640 aa10.66□□□□□ -0.7
PTPN3-204ENST00000446349 HECW1Q76N89 1606 aa10.66□□□□□ -0.7
PTPN3-204ENST00000446349 IRX6P78412 446 aaPredicted RBP10.65□□□□□ -0.7
PTPN3-204ENST00000446349 ITPRIPQ8IWB1 547 aa10.65□□□□□ -0.7
PTPN3-204ENST00000446349 NBR1Q14596 966 aa10.65□□□□□ -0.7
PTPN3-204ENST00000446349 RCAN3Q9UKA8 241 aa10.65□□□□□ -0.71
PTPN3-204ENST00000446349 KANK4Q5T7N3 995 aaPredicted RBP10.64□□□□□ -0.71
PTPN3-204ENST00000446349 CFTRP13569 1480 aa10.63□□□□□ -0.71
PTPN3-204ENST00000446349 GPRASP1Q5JY77 1395 aa10.63□□□□□ -0.71
PTPN3-204ENST00000446349 TRAK1Q9UPV9 953 aa10.63□□□□□ -0.71
PTPN3-204ENST00000446349 MYBBP1AQ9BQG0 1328 aaKnown RBP10.63□□□□□ -0.71
PTPN3-204ENST00000446349 TRIM34Q9BYJ4 488 aa10.63□□□□□ -0.71
PTPN3-204ENST00000446349 DNMBPQ6XZF7 1577 aa10.63□□□□□ -0.71
PTPN3-204ENST00000446349 CASKIN1Q8WXD9 1431 aa10.62□□□□□ -0.71
PTPN3-204ENST00000446349 CENPJQ9HC77 1338 aaPredicted RBP10.62□□□□□ -0.71
PTPN3-204ENST00000446349 THEMISQ8N1K5 641 aaPredicted RBP10.62□□□□□ -0.71
PTPN3-204ENST00000446349 TCERG1O14776 1098 aaKnown RBP10.62□□□□□ -0.71
PTPN3-204ENST00000446349 CUL7Q14999 1698 aa10.61□□□□□ -0.71
PTPN3-204ENST00000446349 L3MBTL2Q969R5 705 aa10.61□□□□□ -0.71
PTPN3-204ENST00000446349 IGF1RP08069 1367 aa10.61□□□□□ -0.71
PTPN3-204ENST00000446349 EHBP1L1Q8N3D4 1523 aa10.61□□□□□ -0.71
PTPN3-204ENST00000446349 CPLX2Q6PUV4 134 aaKnown RBP10.61□□□□□ -0.71
PTPN3-204ENST00000446349 AAMPQ13685 434 aa10.61□□□□□ -0.71
PTPN3-204ENST00000446349 SMG6Q86US8 1419 aaKnown RBP10.6□□□□□ -0.71
PTPN3-204ENST00000446349 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.6□□□□□ -0.718e-7■■■□□ 18.1
PTPN3-204ENST00000446349 SUPT6HQ7KZ85 1726 aaKnown RBP10.6□□□□□ -0.71
PTPN3-204ENST00000446349 RUFY2Q8WXA3 655 aa10.59□□□□□ -0.71
PTPN3-204ENST00000446349 RAPGEF4Q8WZA2 1011 aa10.59□□□□□ -0.71
PTPN3-204ENST00000446349 PHF14O94880 888 aa10.59□□□□□ -0.71
PTPN3-204ENST00000446349 E9PSI1 815 aa10.59□□□□□ -0.71
PTPN3-204ENST00000446349 CTDP1Q9Y5B0 961 aaPredicted RBP10.59□□□□□ -0.71
PTPN3-204ENST00000446349 HFM1A2PYH4 1435 aa10.59□□□□□ -0.71
PTPN3-204ENST00000446349 SYNE3Q6ZMZ3 975 aa10.58□□□□□ -0.72
PTPN3-204ENST00000446349 TRIM6-TRIM34B2RNG4 842 aa10.58□□□□□ -0.72
PTPN3-204ENST00000446349 HSP90AB4PQ58FF6 505 aa10.58□□□□□ -0.72
PTPN3-204ENST00000446349 ST18O60284 1047 aa10.58□□□□□ -0.72
PTPN3-204ENST00000446349 AKAP17AQ02040 695 aaKnown RBP10.58□□□□□ -0.72
PTPN3-204ENST00000446349 PRG4Q92954 1404 aaPredicted RBP10.58□□□□□ -0.72
PTPN3-204ENST00000446349 PLCB2Q00722 1185 aa10.58□□□□□ -0.72
PTPN3-204ENST00000446349 SLC52A1Q9NWF4 448 aa10.58□□□□□ -0.72
PTPN3-204ENST00000446349 KIF16BQ96L93 1317 aa10.57□□□□□ -0.72
PTPN3-204ENST00000446349 LTV1Q96GA3 475 aaPredicted RBP10.57□□□□□ -0.72
PTPN3-204ENST00000446349 RAD54L2Q9Y4B4 1467 aa10.57□□□□□ -0.72
PTPN3-204ENST00000446349 DRC7Q8IY82 874 aa10.57□□□□□ -0.72
PTPN3-204ENST00000446349 FGD6Q6ZV73 1430 aa10.57□□□□□ -0.72
PTPN3-204ENST00000446349 ATP6V1DQ9Y5K8 247 aa10.57□□□□□ -0.72
PTPN3-204ENST00000446349 TOP2BQ02880 1626 aa10.57□□□□□ -0.72
PTPN3-204ENST00000446349 MARCH6O60337 910 aa10.57□□□□□ -0.72
PTPN3-204ENST00000446349 SF3B2Q13435 895 aaKnown RBP10.56□□□□□ -0.72
PTPN3-204ENST00000446349 SLC4A10Q6U841 1118 aa10.56□□□□□ -0.72
PTPN3-204ENST00000446349 DIAPH1O60610 1272 aaKnown RBP10.56□□□□□ -0.72
PTPN3-204ENST00000446349 ANKRD50Q9ULJ7 1429 aa10.56□□□□□ -0.72
PTPN3-204ENST00000446349 API5Q9BZZ5 524 aaKnown RBP10.56□□□□□ -0.72
PTPN3-204ENST00000446349 USP47Q96K76 1375 aa10.55□□□□□ -0.72
PTPN3-204ENST00000446349 MSH5O43196 834 aa10.55□□□□□ -0.72
PTPN3-204ENST00000446349 CEP89Q96ST8 783 aa10.55□□□□□ -0.72
PTPN3-204ENST00000446349 TCEAL9Q9UHQ7 104 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms