RNA–Protein interactions for RNA: ENST00000442971.1

SSXP3-201, Transcript of SSX family pseudogene 3, humanhuman

BASIC

Gene SSXP3, Length 1,300 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSXP3-201ENST00000442971 IQGAP1P46940 1657 aa13.07□□□□□ -0.32
SSXP3-201ENST00000442971 DEPDC5O75140 1603 aa13.07□□□□□ -0.32
SSXP3-201ENST00000442971 EFCAB2Q5VUJ9 269 aa13.07□□□□□ -0.32
SSXP3-201ENST00000442971 MLH3Q9UHC1 1453 aa13.06□□□□□ -0.32
SSXP3-201ENST00000442971 RBM6P78332 1123 aaKnown RBP13.06□□□□□ -0.32
SSXP3-201ENST00000442971 P3H3Q8IVL6 736 aa13.06□□□□□ -0.32
SSXP3-201ENST00000442971 CCDC125Q86Z20 511 aa13.05□□□□□ -0.32
SSXP3-201ENST00000442971 NUP153P49790 1475 aaKnown RBP13.03□□□□□ -0.32
SSXP3-201ENST00000442971 ABCC1P33527 1531 aa13.03□□□□□ -0.32
SSXP3-201ENST00000442971 AFF2P51816 1311 aa13.03□□□□□ -0.32
SSXP3-201ENST00000442971 EP400Q96L91 3159 aa13.02□□□□□ -0.32
SSXP3-201ENST00000442971 THEMISQ8N1K5 641 aaPredicted RBP13.02□□□□□ -0.33
SSXP3-201ENST00000442971 NHSL1Q5SYE7 1610 aa13.02□□□□□ -0.33
SSXP3-201ENST00000442971 QTRT2Q9H974 415 aaKnown RBP13.01□□□□□ -0.33
SSXP3-201ENST00000442971 ITSN2Q9NZM3 1697 aa13.01□□□□□ -0.33
SSXP3-201ENST00000442971 FGD6Q6ZV73 1430 aa13□□□□□ -0.33
SSXP3-201ENST00000442971 COL16A1Q07092 1604 aaPredicted RBP12.99□□□□□ -0.33
SSXP3-201ENST00000442971 KDM5DQ9BY66 1539 aa12.99□□□□□ -0.33
SSXP3-201ENST00000442971 LRRC9Q6ZRR7 1453 aa12.99□□□□□ -0.33
SSXP3-201ENST00000442971 SLC34A2O95436 690 aa12.99□□□□□ -0.33
SSXP3-201ENST00000442971 C1QTNF8P60827 252 aa12.99□□□□□ -0.33
SSXP3-201ENST00000442971 HRCP23327 699 aa12.97□□□□□ -0.33
SSXP3-201ENST00000442971 MAPK8IP2Q13387 824 aaPredicted RBP12.97□□□□□ -0.33
SSXP3-201ENST00000442971 NGLY1Q96IV0 654 aa12.96□□□□□ -0.33
SSXP3-201ENST00000442971 MYO5CQ9NQX4 1742 aa12.96□□□□□ -0.33
SSXP3-201ENST00000442971 CEP350Q5VT06 3117 aa12.95□□□□□ -0.34
SSXP3-201ENST00000442971 TNRQ92752 1358 aa12.95□□□□□ -0.34
SSXP3-201ENST00000442971 SHPRHQ149N8 1683 aa12.94□□□□□ -0.34
SSXP3-201ENST00000442971 PPP4R3CPQ6ZMV5 832 aa12.94□□□□□ -0.34
SSXP3-201ENST00000442971 KIDINS220Q9ULH0 1771 aa12.94□□□□□ -0.34
SSXP3-201ENST00000442971 NWD1Q149M9 1564 aa12.94□□□□□ -0.34
SSXP3-201ENST00000442971 FAM135AQ9P2D6 1515 aa12.94□□□□□ -0.34
SSXP3-201ENST00000442971 ZC3H13Q5T200 1668 aaKnown RBP12.94□□□□□ -0.34
SSXP3-201ENST00000442971 TMEM94Q12767 1356 aa12.93□□□□□ -0.34
SSXP3-201ENST00000442971 PSDA5PKW4 1024 aaPredicted RBP12.92□□□□□ -0.34
SSXP3-201ENST00000442971 ZNF784Q8NCA9 323 aaPredicted RBP12.92□□□□□ -0.34
SSXP3-201ENST00000442971 UGGT1Q9NYU2 1555 aa12.92□□□□□ -0.34
SSXP3-201ENST00000442971 SLAIN2Q9P270 581 aa12.91□□□□□ -0.34
SSXP3-201ENST00000442971 FBXO31Q5XUX0 539 aaPredicted RBP12.9□□□□□ -0.34
SSXP3-201ENST00000442971 GGT6Q6P531 493 aa12.9□□□□□ -0.34
SSXP3-201ENST00000442971 PCDH10Q9P2E7 1040 aa12.89□□□□□ -0.35
SSXP3-201ENST00000442971 ATP7AQ04656 1500 aa12.89□□□□□ -0.35
SSXP3-201ENST00000442971 ARHGAP5Q13017 1502 aa12.89□□□□□ -0.35
SSXP3-201ENST00000442971 DEFB132Q7Z7B7 95 aa12.88□□□□□ -0.35
SSXP3-201ENST00000442971 BCL9LQ86UU0 1499 aa12.88□□□□□ -0.35
SSXP3-201ENST00000442971 MAP3K1Q13233 1512 aa12.87□□□□□ -0.35
SSXP3-201ENST00000442971 C8orf37Q96NL8 207 aa12.87□□□□□ -0.35
SSXP3-201ENST00000442971 KIF14Q15058 1648 aa12.86□□□□□ -0.35
SSXP3-201ENST00000442971 BLMP54132 1417 aaPredicted RBP12.85□□□□□ -0.35
SSXP3-201ENST00000442971 NLRP1Q9C000 1473 aa12.85□□□□□ -0.35
SSXP3-201ENST00000442971 DCAF8L1A6NGE4 600 aa12.85□□□□□ -0.35
SSXP3-201ENST00000442971 PROSER2Q86WR7 435 aaPredicted RBP12.83□□□□□ -0.36
SSXP3-201ENST00000442971 SAMD9Q5K651 1589 aa12.82□□□□□ -0.36
SSXP3-201ENST00000442971 MSH6P52701 1360 aa12.81□□□□□ -0.36
SSXP3-201ENST00000442971 MIA2Q96PC5 1412 aa12.81□□□□□ -0.36
SSXP3-201ENST00000442971 AHDC1Q5TGY3 1603 aaPredicted RBP12.8□□□□□ -0.36
SSXP3-201ENST00000442971 PLXNC1O60486 1568 aa12.79□□□□□ -0.36
SSXP3-201ENST00000442971 SF3B2Q13435 895 aaKnown RBP12.79□□□□□ -0.36
SSXP3-201ENST00000442971 PZPP20742 1482 aa12.78□□□□□ -0.36
SSXP3-201ENST00000442971 TIAM1Q13009 1591 aa12.78□□□□□ -0.36
SSXP3-201ENST00000442971 DIP2AQ14689 1571 aa12.78□□□□□ -0.36
SSXP3-201ENST00000442971 EHMT2Q96KQ7 1210 aa12.78□□□□□ -0.36
SSXP3-201ENST00000442971 SCAF11Q99590 1463 aaKnown RBP12.78□□□□□ -0.36
SSXP3-201ENST00000442971 A2MP01023 1474 aa12.77□□□□□ -0.37
SSXP3-201ENST00000442971 KCNA6P17658 529 aa12.76□□□□□ -0.37
SSXP3-201ENST00000442971 TRPC5Q9UL62 973 aaPredicted RBP12.76□□□□□ -0.37
SSXP3-201ENST00000442971 ABCC3O15438 1527 aa12.75□□□□□ -0.37
SSXP3-201ENST00000442971 PRDM15P57071 1507 aaPredicted RBP12.75□□□□□ -0.37
SSXP3-201ENST00000442971 CDC42BPBQ9Y5S2 1711 aa12.75□□□□□ -0.37
SSXP3-201ENST00000442971 SAMD9LQ8IVG5 1584 aa12.74□□□□□ -0.37
SSXP3-201ENST00000442971 SPAG9O60271 1321 aaKnown RBP12.73□□□□□ -0.37
SSXP3-201ENST00000442971 LTKP29376 864 aa12.73□□□□□ -0.37
SSXP3-201ENST00000442971 USP21Q9UK80 565 aa12.73□□□□□ -0.37
SSXP3-201ENST00000442971 ADGBQ8N7X0 1667 aa12.72□□□□□ -0.37
SSXP3-201ENST00000442971 CAPN15O75808 1086 aa12.72□□□□□ -0.37
SSXP3-201ENST00000442971 R3HDM1Q15032 1099 aaKnown RBP12.72□□□□□ -0.37
SSXP3-201ENST00000442971 TXNDC2Q86VQ3 553 aa12.72□□□□□ -0.37
SSXP3-201ENST00000442971 CNKSR2Q8WXI2 1034 aa12.72□□□□□ -0.37
SSXP3-201ENST00000442971 KDM5AP29375 1690 aaKnown RBP12.7□□□□□ -0.38
SSXP3-201ENST00000442971 RTEL1-TNFRSF6BF6WH68 1400 aa12.69□□□□□ -0.38
SSXP3-201ENST00000442971 ATRNO75882 1429 aa12.68□□□□□ -0.38
SSXP3-201ENST00000442971 NKTRP30414 1462 aaKnown RBP12.68□□□□□ -0.38
SSXP3-201ENST00000442971 ADAMTS2O95450 1211 aa12.67□□□□□ -0.38
SSXP3-201ENST00000442971 SETD5Q9C0A6 1442 aa12.66□□□□□ -0.38
SSXP3-201ENST00000442971 GIGYF1O75420 1035 aaPredicted RBP12.66□□□□□ -0.38
SSXP3-201ENST00000442971 NCOA2Q15596 1464 aa12.66□□□□□ -0.38
SSXP3-201ENST00000442971 UNC13BO14795 1591 aa12.66□□□□□ -0.38
SSXP3-201ENST00000442971 CAMTA1Q9Y6Y1 1673 aa12.66□□□□□ -0.38
SSXP3-201ENST00000442971 UBR1Q8IWV7 1749 aa12.65□□□□□ -0.38
SSXP3-201ENST00000442971 ARHGAP23Q9P227 1491 aa12.65□□□□□ -0.38
SSXP3-201ENST00000442971 UTRNP46939 3433 aa12.65□□□□□ -0.39
SSXP3-201ENST00000442971 BAG6P46379 1132 aa12.64□□□□□ -0.39
SSXP3-201ENST00000442971 CDK11AQ9UQ88 783 aaPredicted RBP12.64□□□□□ -0.39
SSXP3-201ENST00000442971 EID1Q9Y6B2 187 aa12.64□□□□□ -0.39
SSXP3-201ENST00000442971 SLIT1O75093 1534 aa12.64□□□□□ -0.39
SSXP3-201ENST00000442971 PREX2Q70Z35 1606 aa12.64□□□□□ -0.39
SSXP3-201ENST00000442971 NINLQ9Y2I6 1382 aa12.63□□□□□ -0.39
SSXP3-201ENST00000442971 FNBP4Q8N3X1 1017 aaPredicted RBP12.63□□□□□ -0.39
SSXP3-201ENST00000442971 LRRC59Q96AG4 307 aaKnown RBP12.63□□□□□ -0.39
SSXP3-201ENST00000442971 WASHC2CQ9Y4E1 1318 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms