RNA–Protein interactions for RNA: ENST00000438964.6

ACTN1-204, Transcript of actinin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene ACTN1, Length 3,043 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-204ENST00000438964 NUP155O75694 1391 aa17.44■□□□□ 0.38
ACTN1-204ENST00000438964 CUL7Q14999 1698 aa17.44■□□□□ 0.38
ACTN1-204ENST00000438964 KDM2BQ8NHM5 1336 aa17.44■□□□□ 0.38
ACTN1-204ENST00000438964 PDE3BQ13370 1112 aa17.44■□□□□ 0.38
ACTN1-204ENST00000438964 ARID4BQ4LE39 1312 aaPredicted RBP17.43■□□□□ 0.38
ACTN1-204ENST00000438964 GAPVD1Q14C86 1478 aa17.43■□□□□ 0.38
ACTN1-204ENST00000438964 DNMBPQ6XZF7 1577 aa17.43■□□□□ 0.38
ACTN1-204ENST00000438964 KIAA1107Q9UPP5 1409 aa17.42■□□□□ 0.38
ACTN1-204ENST00000438964 CC2D2AQ9P2K1 1620 aa17.42■□□□□ 0.38
ACTN1-204ENST00000438964 BCAR3O75815 825 aa17.41■□□□□ 0.38
ACTN1-204ENST00000438964 MBD5Q9P267 1494 aa17.41■□□□□ 0.38
ACTN1-204ENST00000438964 CENPQQ7L2Z9 268 aaPredicted RBP17.41■□□□□ 0.38
ACTN1-204ENST00000438964 PER1O15534 1290 aaPredicted RBP17.39■□□□□ 0.38
ACTN1-204ENST00000438964 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.38■□□□□ 0.375e-7■□□□□ 10.3
ACTN1-204ENST00000438964 SPINK5Q9NQ38 1064 aaPredicted RBP17.38■□□□□ 0.37
ACTN1-204ENST00000438964 PDS5BQ9NTI5 1447 aa17.38■□□□□ 0.37
ACTN1-204ENST00000438964 FAM43AQ8N2R8 423 aa17.38■□□□□ 0.37
ACTN1-204ENST00000438964 PLEKHH1Q9ULM0 1364 aa17.38■□□□□ 0.37
ACTN1-204ENST00000438964 PRG4Q92954 1404 aaPredicted RBP17.37■□□□□ 0.37
ACTN1-204ENST00000438964 IGHDP01880 384 aa17.37■□□□□ 0.37
ACTN1-204ENST00000438964 ROCK1Q13464 1354 aa17.37■□□□□ 0.37
ACTN1-204ENST00000438964 PARD3Q8TEW0 1356 aa17.37■□□□□ 0.37
ACTN1-204ENST00000438964 NAP1L5Q96NT1 182 aaPredicted RBP17.37■□□□□ 0.37
ACTN1-204ENST00000438964 RSPH6AQ9H0K4 717 aa17.37■□□□□ 0.37
ACTN1-204ENST00000438964 DUSP27Q5VZP5 1158 aa17.36■□□□□ 0.37
ACTN1-204ENST00000438964 PANK2Q9BZ23 570 aa17.36■□□□□ 0.37
ACTN1-204ENST00000438964 DISP3Q9P2K9 1392 aa17.35■□□□□ 0.37
ACTN1-204ENST00000438964 KIF14Q15058 1648 aa17.35■□□□□ 0.37
ACTN1-204ENST00000438964 URB2Q14146 1524 aaKnown RBP17.35■□□□□ 0.37
ACTN1-204ENST00000438964 WDR43Q15061 677 aaKnown RBP eCLIP17.34■□□□□ 0.37
ACTN1-204ENST00000438964 LAMC3Q9Y6N6 1575 aa17.34■□□□□ 0.37
ACTN1-204ENST00000438964 KIAA0586Q9BVV6 1533 aa17.33■□□□□ 0.36
ACTN1-204ENST00000438964 RALGAPBQ86X10 1494 aa17.32■□□□□ 0.36
ACTN1-204ENST00000438964 DNMT1P26358 1616 aaKnown RBP17.32■□□□□ 0.36
ACTN1-204ENST00000438964 VSIG10Q8N0Z9 540 aa17.31■□□□□ 0.36
ACTN1-204ENST00000438964 PANK1Q8TE04 598 aa17.31■□□□□ 0.36
ACTN1-204ENST00000438964 DMRT2Q9Y5R5 561 aa17.31■□□□□ 0.36
ACTN1-204ENST00000438964 USP19O94966 1318 aa17.31■□□□□ 0.36
ACTN1-204ENST00000438964 ANKRD50Q9ULJ7 1429 aa17.31■□□□□ 0.36
ACTN1-204ENST00000438964 COG6Q9Y2V7 657 aa17.31■□□□□ 0.36
ACTN1-204ENST00000438964 NEUROD2Q15784 382 aa17.3■□□□□ 0.36
ACTN1-204ENST00000438964 HNRNPMP52272 730 aaKnown RBP eCLIP17.3■□□□□ 0.361e-6■■■■□ 24.2
ACTN1-204ENST00000438964 GOLGA2Q08379 1002 aa17.3■□□□□ 0.36
ACTN1-204ENST00000438964 CAMSAP2Q08AD1 1489 aa17.29■□□□□ 0.36
ACTN1-204ENST00000438964 CANXP27824 592 aaKnown RBP17.29■□□□□ 0.36
ACTN1-204ENST00000438964 APAF1O14727 1248 aa17.29■□□□□ 0.36
ACTN1-204ENST00000438964 PKNOX2Q96KN3 472 aa17.28■□□□□ 0.36
ACTN1-204ENST00000438964 BCL2L13Q9BXK5 485 aa17.28■□□□□ 0.36
ACTN1-204ENST00000438964 TNNQ9UQP3 1299 aa17.27■□□□□ 0.35
ACTN1-204ENST00000438964 WDR62O43379 1518 aa17.26■□□□□ 0.35
ACTN1-204ENST00000438964 ANKRD30AQ9BXX3 1397 aa17.26■□□□□ 0.35
ACTN1-204ENST00000438964 XRCC6P12956 609 aaKnown RBP eCLIP17.25■□□□□ 0.35
ACTN1-204ENST00000438964 PPP2R1AP30153 589 aa17.25■□□□□ 0.35
ACTN1-204ENST00000438964 TESK2Q96S53 571 aa17.24■□□□□ 0.35
ACTN1-204ENST00000438964 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.24■□□□□ 0.35
ACTN1-204ENST00000438964 CLUAP1Q96AJ1 413 aa17.24■□□□□ 0.35
ACTN1-204ENST00000438964 FBLN2P98095 1184 aa17.23■□□□□ 0.35
ACTN1-204ENST00000438964 BLMP54132 1417 aaPredicted RBP17.23■□□□□ 0.35
ACTN1-204ENST00000438964 KNSTRNQ9Y448 316 aa17.23■□□□□ 0.35
ACTN1-204ENST00000438964 UHRF1BP1Q6BDS2 1440 aa17.22■□□□□ 0.35
ACTN1-204ENST00000438964 RRP7AQ9Y3A4 280 aaKnown RBP17.22■□□□□ 0.35
ACTN1-204ENST00000438964 NUP153P49790 1475 aaKnown RBP17.22■□□□□ 0.35
ACTN1-204ENST00000438964 IQGAP2Q13576 1575 aa17.22■□□□□ 0.35
ACTN1-204ENST00000438964 TSPY4P0CV99 314 aa17.21■□□□□ 0.35
ACTN1-204ENST00000438964 TSPY10P0CW01 314 aa17.21■□□□□ 0.35
ACTN1-204ENST00000438964 TNNT2P45379 298 aaPredicted RBP17.21■□□□□ 0.34
ACTN1-204ENST00000438964 SLFN5Q08AF3 891 aa17.21■□□□□ 0.34
ACTN1-204ENST00000438964 PNNQ9H307 717 aaKnown RBP17.21■□□□□ 0.34
ACTN1-204ENST00000438964 BECN1Q14457 450 aa17.2■□□□□ 0.34
ACTN1-204ENST00000438964 ZMYM4Q5VZL5 1548 aa17.2■□□□□ 0.34
ACTN1-204ENST00000438964 TBC1D2Q9BYX2 928 aa17.2■□□□□ 0.34
ACTN1-204ENST00000438964 ZMYND15Q9H091 742 aa17.19■□□□□ 0.34
ACTN1-204ENST00000438964 TMF1P82094 1093 aa17.19■□□□□ 0.34
ACTN1-204ENST00000438964 GOLGA6L3A6NEY3 463 aa17.18■□□□□ 0.34
ACTN1-204ENST00000438964 GPATCH8Q9UKJ3 1502 aaKnown RBP17.17■□□□□ 0.34
ACTN1-204ENST00000438964 E9PCH4 1651 aa17.17■□□□□ 0.34
ACTN1-204ENST00000438964 ZNF608Q9ULD9 1512 aaPredicted RBP17.17■□□□□ 0.34
ACTN1-204ENST00000438964 PLB1Q6P1J6 1458 aa17.16■□□□□ 0.34
ACTN1-204ENST00000438964 ANTXR1Q9H6X2 564 aa17.15■□□□□ 0.34
ACTN1-204ENST00000438964 HSP90AA2PQ14568 343 aaPredicted RBP17.15■□□□□ 0.34
ACTN1-204ENST00000438964 L1TD1Q5T7N2 865 aaKnown RBP17.15■□□□□ 0.34
ACTN1-204ENST00000438964 MFAP1P55081 439 aaKnown RBP17.14■□□□□ 0.33
ACTN1-204ENST00000438964 ERBINQ96RT1 1412 aa17.14■□□□□ 0.33
ACTN1-204ENST00000438964 PRAG1Q86YV5 1406 aa17.14■□□□□ 0.33
ACTN1-204ENST00000438964 CCDC144AA2RUR9 1427 aa17.13■□□□□ 0.33
ACTN1-204ENST00000438964 ZNF521Q96K83 1311 aa17.13■□□□□ 0.33
ACTN1-204ENST00000438964 PCDHB15Q9Y5E8 787 aa17.13■□□□□ 0.33
ACTN1-204ENST00000438964 C9orf84Q5VXU9 1444 aa17.13■□□□□ 0.33
ACTN1-204ENST00000438964 RLBP1P12271 317 aa17.13■□□□□ 0.33
ACTN1-204ENST00000438964 FOXD4L1Q9NU39 408 aa17.13■□□□□ 0.33
ACTN1-204ENST00000438964 HSP90AA1P07900 732 aaKnown RBP17.12■□□□□ 0.33
ACTN1-204ENST00000438964 UPF2Q9HAU5 1272 aaKnown RBP17.11■□□□□ 0.33
ACTN1-204ENST00000438964 PDZRN3Q9UPQ7 1066 aa17.11■□□□□ 0.33
ACTN1-204ENST00000438964 MAGI2Q86UL8 1455 aa17.11■□□□□ 0.33
ACTN1-204ENST00000438964 ERBB4Q15303 1308 aa17.1■□□□□ 0.33
ACTN1-204ENST00000438964 TROQ12816 1431 aaPredicted RBP17.1■□□□□ 0.33
ACTN1-204ENST00000438964 MCM4P33991 863 aa17.1■□□□□ 0.33
ACTN1-204ENST00000438964 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
ACTN1-204ENST00000438964 COL17A1Q9UMD9 1497 aaPredicted RBP17.1■□□□□ 0.33
ACTN1-204ENST00000438964 KIF21AQ7Z4S6 1674 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms