RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 BCL2L12Q9HB09 334 aa5.34□□□□□ -1.55
VPS13A-208ENST00000423463 FBXW7Q969H0 707 aa5.33□□□□□ -1.56
VPS13A-208ENST00000423463 EPAS1Q99814 870 aa5.33□□□□□ -1.56
VPS13A-208ENST00000423463 KRTAP3-3Q9BYR6 98 aa5.33□□□□□ -1.56
VPS13A-208ENST00000423463 KRTAP3-2Q9BYR7 98 aa5.33□□□□□ -1.56
VPS13A-208ENST00000423463 COL9A1P20849 921 aa5.33□□□□□ -1.56
VPS13A-208ENST00000423463 C6orf132Q5T0Z8 1188 aa5.33□□□□□ -1.56
VPS13A-208ENST00000423463 NUTM2FA1L443 756 aa5.32□□□□□ -1.56
VPS13A-208ENST00000423463 DMRTA1Q5VZB9 504 aa5.32□□□□□ -1.56
VPS13A-208ENST00000423463 PTPREP23469 700 aa5.32□□□□□ -1.56
VPS13A-208ENST00000423463 LMOD2Q6P5Q4 547 aa5.32□□□□□ -1.56
VPS13A-208ENST00000423463 ARHGAP33O14559 1287 aa5.31□□□□□ -1.56
VPS13A-208ENST00000423463 PROX2Q3B8N5 592 aa5.31□□□□□ -1.56
VPS13A-208ENST00000423463 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.31□□□□□ -1.56
VPS13A-208ENST00000423463 SMYD5Q6GMV2 418 aa5.31□□□□□ -1.56
VPS13A-208ENST00000423463 ANKRD13DQ6ZTN6 518 aa5.3□□□□□ -1.56
VPS13A-208ENST00000423463 LSM11P83369 360 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS13A-208ENST00000423463 KCNH8Q96L42 1107 aa5.3□□□□□ -1.56
VPS13A-208ENST00000423463 NPDC1Q9NQX5 325 aaPredicted RBP5.3□□□□□ -1.56
VPS13A-208ENST00000423463 TULP1O00294 542 aaPredicted RBP5.29□□□□□ -1.56
VPS13A-208ENST00000423463 GPIHBP1Q8IV16 184 aa5.29□□□□□ -1.56
VPS13A-208ENST00000423463 PPP1R3GB7ZBB8 358 aa5.29□□□□□ -1.56
VPS13A-208ENST00000423463 PBX2P40425 430 aa5.28□□□□□ -1.56
VPS13A-208ENST00000423463 PTGDRQ13258 359 aa5.28□□□□□ -1.56
VPS13A-208ENST00000423463 GPR37O15354 613 aa5.28□□□□□ -1.56
VPS13A-208ENST00000423463 ZBED2Q9BTP6 218 aa5.28□□□□□ -1.56
VPS13A-208ENST00000423463 FECHP22830 423 aa5.27□□□□□ -1.57
VPS13A-208ENST00000423463 FAM161AQ3B820 660 aa5.27□□□□□ -1.57
VPS13A-208ENST00000423463 ADGRD1Q6QNK2 874 aa5.26□□□□□ -1.57
VPS13A-208ENST00000423463 PADI6Q6TGC4 694 aa5.26□□□□□ -1.57
VPS13A-208ENST00000423463 CDCA7LQ96GN5 454 aa5.26□□□□□ -1.57
VPS13A-208ENST00000423463 TSKSQ9UJT2 592 aa5.26□□□□□ -1.57
VPS13A-208ENST00000423463 C3orf80F5H4A9 247 aa5.26□□□□□ -1.57
VPS13A-208ENST00000423463 FAM198AQ9UFP1 575 aa5.26□□□□□ -1.57
VPS13A-208ENST00000423463 SMAPO00193 183 aa5.25□□□□□ -1.57
VPS13A-208ENST00000423463 VPS9D1Q9Y2B5 631 aa5.25□□□□□ -1.57
VPS13A-208ENST00000423463 SEPT9Q9UHD8 586 aaPredicted RBP5.25□□□□□ -1.57
VPS13A-208ENST00000423463 FCHSD2O94868 740 aa5.25□□□□□ -1.57
VPS13A-208ENST00000423463 PRSS12P56730 875 aa5.24□□□□□ -1.57
VPS13A-208ENST00000423463 TRIM6-TRIM34B2RNG4 842 aa5.24□□□□□ -1.57
VPS13A-208ENST00000423463 ZC3H15Q8WU90 426 aaKnown RBP5.24□□□□□ -1.57
VPS13A-208ENST00000423463 KIAA1468Q9P260 1216 aa5.24□□□□□ -1.57
VPS13A-208ENST00000423463 GNPATO15228 680 aa5.23□□□□□ -1.57
VPS13A-208ENST00000423463 HIC1Q14526 733 aa5.23□□□□□ -1.57
VPS13A-208ENST00000423463 CERKQ8TCT0 537 aa5.23□□□□□ -1.57
VPS13A-208ENST00000423463 HRO43593 1189 aa5.22□□□□□ -1.57
VPS13A-208ENST00000423463 NLRP7Q8WX94 980 aa5.22□□□□□ -1.57
VPS13A-208ENST00000423463 NUDT18Q6ZVK8 323 aa5.21□□□□□ -1.58
VPS13A-208ENST00000423463 RABGEF1Q9UJ41 708 aa5.21□□□□□ -1.58
VPS13A-208ENST00000423463 TK2O00142 265 aa5.21□□□□□ -1.58
VPS13A-208ENST00000423463 PNMA3Q9UL41 463 aa5.21□□□□□ -1.58
VPS13A-208ENST00000423463 BHMG1C9JSJ3 638 aaPredicted RBP5.2□□□□□ -1.58
VPS13A-208ENST00000423463 TPRNQ4KMQ1 711 aa5.2□□□□□ -1.58
VPS13A-208ENST00000423463 SPNS2Q8IVW8 549 aa5.2□□□□□ -1.58
VPS13A-208ENST00000423463 TTC13Q8NBP0 860 aa5.2□□□□□ -1.58
VPS13A-208ENST00000423463 SLC4A5Q9BY07 1137 aa5.2□□□□□ -1.58
VPS13A-208ENST00000423463 RBM27Q9P2N5 1060 aaKnown RBP5.2□□□□□ -1.58
VPS13A-208ENST00000423463 ZMYND10O75800 440 aa5.19□□□□□ -1.58
VPS13A-208ENST00000423463 PRKCSHP14314 528 aaPredicted RBP5.19□□□□□ -1.58
VPS13A-208ENST00000423463 PACS2Q86VP3 889 aa5.19□□□□□ -1.58
VPS13A-208ENST00000423463 MRPL50Q8N5N7 158 aaKnown RBP5.19□□□□□ -1.58
VPS13A-208ENST00000423463 TATDN2Q93075 761 aa5.19□□□□□ -1.58
VPS13A-208ENST00000423463 NBPF3Q9H094 633 aa5.19□□□□□ -1.58
VPS13A-208ENST00000423463 PCDH10Q9P2E7 1040 aa5.19□□□□□ -1.58
VPS13A-208ENST00000423463 ADGRG1Q9Y653 693 aa5.19□□□□□ -1.58
VPS13A-208ENST00000423463 NBPF26B4DH59 902 aa5.18□□□□□ -1.58
VPS13A-208ENST00000423463 PHOX2BQ99453 314 aa5.18□□□□□ -1.58
VPS13A-208ENST00000423463 CCDC102AQ96A19 550 aa5.18□□□□□ -1.58
VPS13A-208ENST00000423463 MAP2K5Q13163 448 aa5.17□□□□□ -1.58
VPS13A-208ENST00000423463 KRI1Q8N9T8 703 aaKnown RBP5.17□□□□□ -1.58
VPS13A-208ENST00000423463 STAC3Q96MF2 364 aa5.17□□□□□ -1.58
VPS13A-208ENST00000423463 SLC24A3Q9HC58 644 aa5.17□□□□□ -1.58
VPS13A-208ENST00000423463 IGSF5Q9NSI5 407 aa5.17□□□□□ -1.58
VPS13A-208ENST00000423463 METTL3Q86U44 580 aaKnown RBP5.17□□□□□ -1.58
VPS13A-208ENST00000423463 KCTD12Q96CX2 325 aaKnown RBP5.17□□□□□ -1.58
VPS13A-208ENST00000423463 MYT1LQ9UL68 1186 aa5.17□□□□□ -1.58
VPS13A-208ENST00000423463 ONECUT3O60422 494 aaPredicted RBP5.17□□□□□ -1.58
VPS13A-208ENST00000423463 BARGINQ6ZT62 677 aa5.17□□□□□ -1.58
VPS13A-208ENST00000423463 ZFRQ96KR1 1074 aaKnown RBP5.17□□□□□ -1.58
VPS13A-208ENST00000423463 IRF6O14896 467 aa5.16□□□□□ -1.58
VPS13A-208ENST00000423463 RNF40O75150 1001 aa5.16□□□□□ -1.58
VPS13A-208ENST00000423463 FAM98CQ17RN3 349 aaKnown RBP5.16□□□□□ -1.58
VPS13A-208ENST00000423463 PXYLP1Q8TE99 480 aa5.16□□□□□ -1.58
VPS13A-208ENST00000423463 EYA1Q99502 592 aa5.16□□□□□ -1.58
VPS13A-208ENST00000423463 GOLGA8CPA6NN73 597 aa5.15□□□□□ -1.58
VPS13A-208ENST00000423463 BCAMP50895 628 aa5.15□□□□□ -1.58
VPS13A-208ENST00000423463 SAMD7Q7Z3H4 446 aa5.15□□□□□ -1.58
VPS13A-208ENST00000423463 RCCD1A6NED2 376 aa5.15□□□□□ -1.59
VPS13A-208ENST00000423463 MMRN1Q13201 1228 aa5.15□□□□□ -1.59
VPS13A-208ENST00000423463 RBM46Q8TBY0 533 aaKnown RBP5.15□□□□□ -1.59
VPS13A-208ENST00000423463 WNT2BQ93097 391 aa5.15□□□□□ -1.59
VPS13A-208ENST00000423463 PLSCR2Q9NRY7 297 aa5.15□□□□□ -1.59
VPS13A-208ENST00000423463 RNF166Q96A37 237 aaPredicted RBP5.14□□□□□ -1.59
VPS13A-208ENST00000423463 MINK1Q8N4C8 1332 aaPredicted RBP5.14□□□□□ -1.59
VPS13A-208ENST00000423463 SWT1Q5T5J6 900 aaKnown RBP5.13□□□□□ -1.59
VPS13A-208ENST00000423463 CCDC180Q9P1Z9 1646 aa5.13□□□□□ -1.59
VPS13A-208ENST00000423463 OATP04181 439 aa5.13□□□□□ -1.59
VPS13A-208ENST00000423463 PTPN5P54829 565 aa5.13□□□□□ -1.59
VPS13A-208ENST00000423463 DNAJB2P25686 324 aa5.12□□□□□ -1.59
VPS13A-208ENST00000423463 MDM2Q00987 491 aaPredicted RBP5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms