RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 WRNQ14191 1432 aaPredicted RBP eCLIP4.29□□□□□ -1.72
SYNE1-212ENST00000423061 CSPP1Q1MSJ5 1256 aa4.29□□□□□ -1.72
SYNE1-212ENST00000423061 VPS8Q8N3P4 1428 aa4.28□□□□□ -1.72
SYNE1-212ENST00000423061 PPP1R15AO75807 674 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-212ENST00000423061 NASPP49321 788 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-212ENST00000423061 HSP90AB1P08238 724 aaKnown RBP4.28□□□□□ -1.72
SYNE1-212ENST00000423061 GOLIM4O00461 696 aa4.28□□□□□ -1.72
SYNE1-212ENST00000423061 GRPEL1Q9HAV7 217 aa4.28□□□□□ -1.72
SYNE1-212ENST00000423061 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.28□□□□□ -1.72
SYNE1-212ENST00000423061 ZBTB12Q9Y330 459 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-212ENST00000423061 SRPK2P78362 688 aaKnown RBP4.27□□□□□ -1.73
SYNE1-212ENST00000423061 GOLGA6L22H0YM25 854 aa4.27□□□□□ -1.73
SYNE1-212ENST00000423061 DYNC1I1O14576 645 aa4.27□□□□□ -1.73
SYNE1-212ENST00000423061 MTUS2Q5JR59 1369 aa4.27□□□□□ -1.73
SYNE1-212ENST00000423061 DNAJC2Q99543 621 aaKnown RBP4.27□□□□□ -1.73
SYNE1-212ENST00000423061 MCM4P33991 863 aa4.27□□□□□ -1.73
SYNE1-212ENST00000423061 NPHP1O15259 732 aa4.27□□□□□ -1.73
SYNE1-212ENST00000423061 AXDND1Q5T1B0 1012 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-212ENST00000423061 TMED8Q6PL24 325 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-212ENST00000423061 NGEFQ8N5V2 710 aa4.27□□□□□ -1.73
SYNE1-212ENST00000423061 CHAF1AQ13111 956 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-212ENST00000423061 ZSCAN30Q86W11 494 aa4.26□□□□□ -1.73
SYNE1-212ENST00000423061 LETM1O95202 739 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-212ENST00000423061 SASS6Q6UVJ0 657 aa4.26□□□□□ -1.73
SYNE1-212ENST00000423061 IBSPP21815 317 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-212ENST00000423061 CRBNQ96SW2 442 aa4.26□□□□□ -1.73
SYNE1-212ENST00000423061 KCNG1Q9UIX4 513 aa4.26□□□□□ -1.73
SYNE1-212ENST00000423061 TOP2AP11388 1531 aaKnown RBP4.26□□□□□ -1.73
SYNE1-212ENST00000423061 GBP4Q96PP9 640 aa4.26□□□□□ -1.73
SYNE1-212ENST00000423061 GOLGA6L6A8MZA4 724 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 CCDC184Q52MB2 194 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 UTP14CQ5TAP6 766 aaKnown RBP4.25□□□□□ -1.73
SYNE1-212ENST00000423061 FAM161AQ3B820 660 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 PRR29P0C7W0 189 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 RNF214Q8ND24 703 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 RGS22Q8NE09 1264 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 ABCC8Q09428 1581 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 DDX11L8A8MPP1 907 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 KIF27Q86VH2 1401 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 HMGB1P1B2RPK0 211 aaPredicted RBP4.25□□□□□ -1.73
SYNE1-212ENST00000423061 CCNB3Q8WWL7 1395 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 ARHGAP35Q9NRY4 1499 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 FHAD1B1AJZ9 1412 aa4.25□□□□□ -1.73
SYNE1-212ENST00000423061 JARID2Q92833 1246 aaPredicted RBP4.25□□□□□ -1.73
SYNE1-212ENST00000423061 EP400NLQ6ZTU2 488 aa4.24□□□□□ -1.73
SYNE1-212ENST00000423061 PDCL2Q8N4E4 241 aa4.24□□□□□ -1.73
SYNE1-212ENST00000423061 CCDC66A2RUB6 948 aa4.24□□□□□ -1.73
SYNE1-212ENST00000423061 MLECQ14165 292 aa4.24□□□□□ -1.73
SYNE1-212ENST00000423061 DRC7Q8IY82 874 aa4.24□□□□□ -1.73
SYNE1-212ENST00000423061 C17orf53Q8N3J3 647 aaPredicted RBP4.24□□□□□ -1.73
SYNE1-212ENST00000423061 HSCBQ8IWL3 235 aa4.24□□□□□ -1.73
SYNE1-212ENST00000423061 FAM43BQ6ZT52 329 aaPredicted RBP4.24□□□□□ -1.73
SYNE1-212ENST00000423061 PIK3R5Q8WYR1 880 aa4.24□□□□□ -1.73
SYNE1-212ENST00000423061 IRX5P78411 483 aaPredicted RBP4.24□□□□□ -1.73
SYNE1-212ENST00000423061 CENPJQ9HC77 1338 aaPredicted RBP4.24□□□□□ -1.73
SYNE1-212ENST00000423061 ZNF592Q92610 1267 aa4.24□□□□□ -1.73
SYNE1-212ENST00000423061 GTF2F1P35269 517 aaKnown RBP eCLIP4.24□□□□□ -1.73
SYNE1-212ENST00000423061 NUDCQ9Y266 331 aa4.23□□□□□ -1.73
SYNE1-212ENST00000423061 POLR3GO15318 223 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-212ENST00000423061 CCDC173Q0VFZ6 552 aa4.23□□□□□ -1.73
SYNE1-212ENST00000423061 DRC1Q96MC2 740 aa4.23□□□□□ -1.73
SYNE1-212ENST00000423061 CCDC39Q9UFE4 941 aa4.23□□□□□ -1.73
SYNE1-212ENST00000423061 MPHOSPH10O00566 681 aaKnown RBP4.23□□□□□ -1.73
SYNE1-212ENST00000423061 RSPH14Q9UHP6 348 aa4.23□□□□□ -1.73
SYNE1-212ENST00000423061 KIF3AQ9Y496 699 aa4.23□□□□□ -1.73
SYNE1-212ENST00000423061 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-212ENST00000423061 SKOR2Q2VWA4 1001 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-212ENST00000423061 RGL3Q3MIN7 710 aa4.23□□□□□ -1.73
SYNE1-212ENST00000423061 ERBB4Q15303 1308 aa4.22□□□□□ -1.73
SYNE1-212ENST00000423061 MYCBPQ99417 103 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-212ENST00000423061 KIF20AO95235 890 aa4.22□□□□□ -1.73
SYNE1-212ENST00000423061 MFAP1P55081 439 aaKnown RBP4.22□□□□□ -1.73
SYNE1-212ENST00000423061 TTLL5Q6EMB2 1281 aa4.22□□□□□ -1.73
SYNE1-212ENST00000423061 SKIDA1Q1XH10 827 aa4.22□□□□□ -1.73
SYNE1-212ENST00000423061 DDX49Q9Y6V7 483 aaKnown RBP4.22□□□□□ -1.73
SYNE1-212ENST00000423061 ZNF622Q969S3 477 aaKnown RBP eCLIP4.22□□□□□ -1.73
SYNE1-212ENST00000423061 CHMP5Q9NZZ3 219 aa4.22□□□□□ -1.73
SYNE1-212ENST00000423061 TDO2P48775 406 aa4.22□□□□□ -1.73
SYNE1-212ENST00000423061 TICAM2Q86XR7 235 aa4.22□□□□□ -1.73
SYNE1-212ENST00000423061 CALCOCO1Q9P1Z2 691 aa4.22□□□□□ -1.73
SYNE1-212ENST00000423061 KIF21BO75037 1637 aa4.21□□□□□ -1.73
SYNE1-212ENST00000423061 CALRP27797 417 aaKnown RBP4.21□□□□□ -1.74
SYNE1-212ENST00000423061 WDR43Q15061 677 aaKnown RBP eCLIP4.21□□□□□ -1.74
SYNE1-212ENST00000423061 RNF216Q9NWF9 866 aaPredicted RBP4.21□□□□□ -1.74
SYNE1-212ENST00000423061 DEF6Q9H4E7 631 aa4.21□□□□□ -1.74
SYNE1-212ENST00000423061 HSPA5P11021 654 aaKnown RBP4.21□□□□□ -1.74
SYNE1-212ENST00000423061 LRCH2Q5VUJ6 765 aa4.21□□□□□ -1.74
SYNE1-212ENST00000423061 TRHP20396 242 aaPredicted RBP4.21□□□□□ -1.74
SYNE1-212ENST00000423061 ATP2B3Q16720 1220 aa4.2□□□□□ -1.74
SYNE1-212ENST00000423061 E2F4Q16254 413 aa4.2□□□□□ -1.74
SYNE1-212ENST00000423061 MEX3CQ5U5Q3 659 aaKnown RBP4.2□□□□□ -1.74
SYNE1-212ENST00000423061 ZSCAN20P17040 1043 aaPredicted RBP4.2□□□□□ -1.74
SYNE1-212ENST00000423061 EIF4G2P78344 907 aaKnown RBP eCLIP4.2□□□□□ -1.74
SYNE1-212ENST00000423061 NBPF1Q3BBV0 1214 aa4.2□□□□□ -1.74
SYNE1-212ENST00000423061 WIZO95785 1651 aa4.2□□□□□ -1.74
SYNE1-212ENST00000423061 CNKSR2Q8WXI2 1034 aa4.2□□□□□ -1.74
SYNE1-212ENST00000423061 SETD5Q9C0A6 1442 aa4.2□□□□□ -1.74
SYNE1-212ENST00000423061 RRP1P56182 461 aaKnown RBP4.2□□□□□ -1.74
SYNE1-212ENST00000423061 BIRC2Q13490 618 aa4.2□□□□□ -1.74
SYNE1-212ENST00000423061 TSPYL1Q9H0U9 437 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms