RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 KCNK17Q96T54 332 aa8.83□□□□□ -1
HMGB1-204ENST00000399489 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.82□□□□□ -1
HMGB1-204ENST00000399489 CADPS2Q86UW7 1296 aa8.82□□□□□ -1
HMGB1-204ENST00000399489 PSEN2P49810 448 aa8.81□□□□□ -1
HMGB1-204ENST00000399489 JPH4Q96JJ6 628 aa8.81□□□□□ -1
HMGB1-204ENST00000399489 ANO8Q9HCE9 1232 aaPredicted RBP8.81□□□□□ -1
HMGB1-204ENST00000399489 PTPREP23469 700 aa8.8□□□□□ -1
HMGB1-204ENST00000399489 FOSBP53539 338 aa8.8□□□□□ -1
HMGB1-204ENST00000399489 BCL2L12Q9HB09 334 aa8.8□□□□□ -1
HMGB1-204ENST00000399489 ZDHHC16Q969W1 377 aa8.79□□□□□ -1
HMGB1-204ENST00000399489 CFAP44Q96MT7 982 aa8.79□□□□□ -1
HMGB1-204ENST00000399489 PAXIP1Q6ZW49 1069 aaPredicted RBP8.78□□□□□ -1
HMGB1-204ENST00000399489 WFS1O76024 890 aa8.77□□□□□ -1
HMGB1-204ENST00000399489 KRTAP9-2Q9BYQ4 174 aa8.77□□□□□ -1
HMGB1-204ENST00000399489 EMILIN3Q9NT22 766 aa8.77□□□□□ -1
HMGB1-204ENST00000399489 WDR70Q9NW82 654 aa8.76□□□□□ -1.01
HMGB1-204ENST00000399489 POTECB2RU33 542 aa8.75□□□□□ -1.01
HMGB1-204ENST00000399489 CAMK2BQ13554 666 aa8.74□□□□□ -1.01
HMGB1-204ENST00000399489 KRTAP1-3Q8IUG1 177 aa8.74□□□□□ -1.01
HMGB1-204ENST00000399489 FBXW7Q969H0 707 aa8.74□□□□□ -1.01
HMGB1-204ENST00000399489 SLC4A5Q9BY07 1137 aa8.74□□□□□ -1.01
HMGB1-204ENST00000399489 KRTAP9-6A0A140TA67 174 aa8.74□□□□□ -1.01
HMGB1-204ENST00000399489 FAM181BA6NEQ2 426 aa8.73□□□□□ -1.01
HMGB1-204ENST00000399489 KCNC4Q03721 635 aa8.73□□□□□ -1.01
HMGB1-204ENST00000399489 TYW1BQ6NUM6 668 aa8.73□□□□□ -1.01
HMGB1-204ENST00000399489 WNT2BQ93097 391 aa8.73□□□□□ -1.01
HMGB1-204ENST00000399489 VPS9D1Q9Y2B5 631 aa8.73□□□□□ -1.01
HMGB1-204ENST00000399489 GOLGA8CPA6NN73 597 aa8.72□□□□□ -1.01
HMGB1-204ENST00000399489 PHF14O94880 888 aa8.72□□□□□ -1.01
HMGB1-204ENST00000399489 DPYSL4O14531 572 aa8.71□□□□□ -1.01
HMGB1-204ENST00000399489 EPAS1Q99814 870 aa8.71□□□□□ -1.01
HMGB1-204ENST00000399489 ADAM33Q9BZ11 813 aa8.71□□□□□ -1.01
HMGB1-204ENST00000399489 PRKD2Q9BZL6 878 aa8.71□□□□□ -1.02
HMGB1-204ENST00000399489 V9GY48 417 aaPredicted RBP8.71□□□□□ -1.02
HMGB1-204ENST00000399489 PDZRN3Q9UPQ7 1066 aa8.7□□□□□ -1.02
HMGB1-204ENST00000399489 NBPF3Q9H094 633 aa8.69□□□□□ -1.02
HMGB1-204ENST00000399489 PCDHGA10Q9Y5H3 936 aa8.69□□□□□ -1.02
HMGB1-204ENST00000399489 XP32Q5T750 250 aa8.68□□□□□ -1.02
HMGB1-204ENST00000399489 ZBED2Q9BTP6 218 aa8.68□□□□□ -1.02
HMGB1-204ENST00000399489 SPDYE16A6NNV3 312 aaPredicted RBP8.68□□□□□ -1.02
HMGB1-204ENST00000399489 PPP1R3GB7ZBB8 358 aa8.68□□□□□ -1.02
HMGB1-204ENST00000399489 MRPL50Q8N5N7 158 aaKnown RBP8.68□□□□□ -1.02
HMGB1-204ENST00000399489 E2F4Q16254 413 aa8.67□□□□□ -1.02
HMGB1-204ENST00000399489 BHMG1C9JSJ3 638 aaPredicted RBP8.64□□□□□ -1.03
HMGB1-204ENST00000399489 PDIA6Q15084 440 aa8.63□□□□□ -1.03
HMGB1-204ENST00000399489 DDX12PQ92771 950 aa8.63□□□□□ -1.03
HMGB1-204ENST00000399489 RBM33Q96EV2 1170 aaKnown RBP8.62□□□□□ -1.03
HMGB1-204ENST00000399489 RABGEF1Q9UJ41 708 aa8.62□□□□□ -1.03
HMGB1-204ENST00000399489 MYT1Q01538 1121 aa8.61□□□□□ -1.03
HMGB1-204ENST00000399489 C6orf132Q5T0Z8 1188 aa8.61□□□□□ -1.03
HMGB1-204ENST00000399489 ONECUT3O60422 494 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-204ENST00000399489 NBR1Q14596 966 aa8.6□□□□□ -1.03
HMGB1-204ENST00000399489 NYAP1Q6ZVC0 841 aa8.6□□□□□ -1.03
HMGB1-204ENST00000399489 MAP3K7O43318 606 aa8.59□□□□□ -1.03
HMGB1-204ENST00000399489 COL9A1P20849 921 aa8.59□□□□□ -1.03
HMGB1-204ENST00000399489 NFX1Q12986 1120 aaKnown RBP8.59□□□□□ -1.03
HMGB1-204ENST00000399489 PSMG3-AS1Q96PY0 264 aa8.59□□□□□ -1.03
HMGB1-204ENST00000399489 ARIH1Q9Y4X5 557 aaPredicted RBP8.59□□□□□ -1.03
HMGB1-204ENST00000399489 LAPTM4BQ86VI4 370 aa8.58□□□□□ -1.04
HMGB1-204ENST00000399489 ANKK1Q8NFD2 765 aa8.58□□□□□ -1.04
HMGB1-204ENST00000399489 PROX2Q3B8N5 592 aa8.57□□□□□ -1.04
HMGB1-204ENST00000399489 EN1Q05925 392 aaPredicted RBP8.57□□□□□ -1.04
HMGB1-204ENST00000399489 KIAA1468Q9P260 1216 aa8.56□□□□□ -1.04
HMGB1-204ENST00000399489 GRXCR2A6NFK2 248 aa8.55□□□□□ -1.04
HMGB1-204ENST00000399489 TRIM6-TRIM34B2RNG4 842 aa8.54□□□□□ -1.04
HMGB1-204ENST00000399489 DGAT1O75907 488 aa8.54□□□□□ -1.04
HMGB1-204ENST00000399489 CERKQ8TCT0 537 aa8.54□□□□□ -1.04
HMGB1-204ENST00000399489 PACS2Q86VP3 889 aa8.54□□□□□ -1.04
HMGB1-204ENST00000399489 TSHZ2Q9NRE2 1034 aa8.51□□□□□ -1.05
HMGB1-204ENST00000399489 FAM98CQ17RN3 349 aaKnown RBP8.5□□□□□ -1.05
HMGB1-204ENST00000399489 ZFRQ96KR1 1074 aaKnown RBP8.5□□□□□ -1.05
HMGB1-204ENST00000399489 TSR1Q2NL82 804 aaKnown RBP8.49□□□□□ -1.05
HMGB1-204ENST00000399489 PKDCCQ504Y2 493 aa8.49□□□□□ -1.05
HMGB1-204ENST00000399489 SEPT9Q9UHD8 586 aaPredicted RBP8.49□□□□□ -1.05
HMGB1-204ENST00000399489 ARHGEF1Q92888 912 aaKnown RBP8.49□□□□□ -1.05
HMGB1-204ENST00000399489 SOWAHBA6NEL2 793 aa8.48□□□□□ -1.05
HMGB1-204ENST00000399489 PRSS12P56730 875 aa8.47□□□□□ -1.05
HMGB1-204ENST00000399489 P3H3Q8IVL6 736 aa8.47□□□□□ -1.05
HMGB1-204ENST00000399489 LRCH3Q96II8 777 aa8.47□□□□□ -1.05
HMGB1-204ENST00000399489 NBPF26B4DH59 902 aa8.46□□□□□ -1.05
HMGB1-204ENST00000399489 BCAMP50895 628 aa8.46□□□□□ -1.05
HMGB1-204ENST00000399489 CDCA7LQ96GN5 454 aa8.46□□□□□ -1.05
HMGB1-204ENST00000399489 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.46□□□□□ -1.05
HMGB1-204ENST00000399489 HDGFP51858 240 aaKnown RBP8.45□□□□□ -1.06
HMGB1-204ENST00000399489 OSBPP22059 807 aa8.44□□□□□ -1.06
HMGB1-204ENST00000399489 TSKSQ9UJT2 592 aa8.44□□□□□ -1.06
HMGB1-204ENST00000399489 TSR3Q9UJK0 312 aaKnown RBP8.43□□□□□ -1.06
HMGB1-204ENST00000399489 LCE3BQ5TA77 95 aa8.43□□□□□ -1.06
HMGB1-204ENST00000399489 RBM27Q9P2N5 1060 aaKnown RBP8.43□□□□□ -1.06
HMGB1-204ENST00000399489 PNMA3Q9UL41 463 aa8.43□□□□□ -1.06
HMGB1-204ENST00000399489 HPS5Q9UPZ3 1129 aa8.42□□□□□ -1.06
HMGB1-204ENST00000399489 PPP4CP60510 307 aa8.4□□□□□ -1.06
HMGB1-204ENST00000399489 KCNV2Q8TDN2 545 aa8.4□□□□□ -1.06
HMGB1-204ENST00000399489 TATDN2Q93075 761 aa8.4□□□□□ -1.06
HMGB1-204ENST00000399489 SLC4A3P48751 1232 aa8.4□□□□□ -1.07
HMGB1-204ENST00000399489 PRIM1P49642 420 aaKnown RBP8.4□□□□□ -1.07
HMGB1-204ENST00000399489 KCTD17Q8N5Z5 321 aa8.4□□□□□ -1.07
HMGB1-204ENST00000399489 CDHR5Q9HBB8 845 aa8.4□□□□□ -1.07
HMGB1-204ENST00000399489 KRTAP4-8A0A0G2JLE6 195 aa8.39□□□□□ -1.07
HMGB1-204ENST00000399489 PLCB2Q00722 1185 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms