RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 CLUAP1Q96AJ1 413 aa20.87■□□□□ 0.93
PCDH1-203ENST00000394536 SLKQ9H2G2 1235 aaPredicted RBP20.87■□□□□ 0.93
PCDH1-203ENST00000394536 IQGAP2Q13576 1575 aa20.87■□□□□ 0.93
PCDH1-203ENST00000394536 SAFB2Q14151 953 aaKnown RBP eCLIP20.87■□□□□ 0.93
PCDH1-203ENST00000394536 PLB1Q6P1J6 1458 aa20.86■□□□□ 0.93
PCDH1-203ENST00000394536 BACH2Q9BYV9 841 aa20.86■□□□□ 0.93
PCDH1-203ENST00000394536 RSPH4AQ5TD94 716 aa20.86■□□□□ 0.93
PCDH1-203ENST00000394536 MS4A1P11836 297 aa20.85■□□□□ 0.93
PCDH1-203ENST00000394536 PTPRGP23470 1445 aa20.85■□□□□ 0.93
PCDH1-203ENST00000394536 BECN1Q14457 450 aa20.85■□□□□ 0.93
PCDH1-203ENST00000394536 C9orf84Q5VXU9 1444 aa20.84■□□□□ 0.93
PCDH1-203ENST00000394536 EFCAB2Q5VUJ9 269 aa20.84■□□□□ 0.93
PCDH1-203ENST00000394536 MORC1Q86VD1 984 aa20.84■□□□□ 0.93
PCDH1-203ENST00000394536 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.84■□□□□ 0.93
PCDH1-203ENST00000394536 C20orf194Q5TEA3 1177 aa20.84■□□□□ 0.93
PCDH1-203ENST00000394536 BCL2L13Q9BXK5 485 aa20.84■□□□□ 0.93
PCDH1-203ENST00000394536 KIF3BO15066 747 aa20.83■□□□□ 0.93
PCDH1-203ENST00000394536 HSP90AA1P07900 732 aaKnown RBP20.82■□□□□ 0.92
PCDH1-203ENST00000394536 MAGI3Q5TCQ9 1506 aa20.82■□□□□ 0.92
PCDH1-203ENST00000394536 FTSJ3Q8IY81 847 aaKnown RBP20.82■□□□□ 0.92
PCDH1-203ENST00000394536 IL27Q8NEV9 243 aa20.81■□□□□ 0.92
PCDH1-203ENST00000394536 U2SURPO15042 1029 aaKnown RBP20.81■□□□□ 0.92
PCDH1-203ENST00000394536 CENPQQ7L2Z9 268 aaPredicted RBP20.81■□□□□ 0.92
PCDH1-203ENST00000394536 COG6Q9Y2V7 657 aa20.8■□□□□ 0.92
PCDH1-203ENST00000394536 DHX29Q7Z478 1369 aaKnown RBP20.8■□□□□ 0.92
PCDH1-203ENST00000394536 ZNF608Q9ULD9 1512 aaPredicted RBP20.8■□□□□ 0.92
PCDH1-203ENST00000394536 CAMSAP2Q08AD1 1489 aa20.79■□□□□ 0.92
PCDH1-203ENST00000394536 FAM161AQ3B820 660 aa20.79■□□□□ 0.92
PCDH1-203ENST00000394536 CFAP53Q96M91 514 aa20.79■□□□□ 0.92
PCDH1-203ENST00000394536 NUTM2DQ5VT03 806 aaPredicted RBP20.78■□□□□ 0.92
PCDH1-203ENST00000394536 KIAA0586Q9BVV6 1533 aa20.78■□□□□ 0.92
PCDH1-203ENST00000394536 CTTNBP2Q8WZ74 1663 aa20.78■□□□□ 0.92
PCDH1-203ENST00000394536 PPP2R1AP30153 589 aa20.77■□□□□ 0.91
PCDH1-203ENST00000394536 GGT6Q6P531 493 aa20.76■□□□□ 0.91
PCDH1-203ENST00000394536 SPAG9O60271 1321 aaKnown RBP20.76■□□□□ 0.91
PCDH1-203ENST00000394536 KDM6BO15054 1643 aa20.76■□□□□ 0.91
PCDH1-203ENST00000394536 TRAK1Q9UPV9 953 aa20.76■□□□□ 0.91
PCDH1-203ENST00000394536 TCOF1Q13428 1488 aaKnown RBP20.76■□□□□ 0.91
PCDH1-203ENST00000394536 USP35Q9P2H5 1018 aa20.75■□□□□ 0.91
PCDH1-203ENST00000394536 STAG3Q9UJ98 1225 aa20.74■□□□□ 0.91
PCDH1-203ENST00000394536 LAMC3Q9Y6N6 1575 aa20.74■□□□□ 0.91
PCDH1-203ENST00000394536 NPM1P06748 294 aaKnown RBP eCLIP20.74■□□□□ 0.91
PCDH1-203ENST00000394536 U2AF1L5P0DN76 240 aaPredicted RBP20.74■□□□□ 0.91
PCDH1-203ENST00000394536 U2AF1Q01081 240 aaKnown RBP eCLIP20.74■□□□□ 0.91
PCDH1-203ENST00000394536 BCAR3O75815 825 aa20.73■□□□□ 0.91
PCDH1-203ENST00000394536 NFKBIBQ15653 356 aa20.73■□□□□ 0.91
PCDH1-203ENST00000394536 ARHGEF11O15085 1522 aa20.73■□□□□ 0.91
PCDH1-203ENST00000394536 CENPJQ9HC77 1338 aaPredicted RBP20.73■□□□□ 0.91
PCDH1-203ENST00000394536 GSE1Q14687 1217 aa20.72■□□□□ 0.91
PCDH1-203ENST00000394536 AFAP1Q8N556 730 aa20.72■□□□□ 0.91
PCDH1-203ENST00000394536 PANK1Q8TE04 598 aa20.71■□□□□ 0.91
PCDH1-203ENST00000394536 GPATCH8Q9UKJ3 1502 aaKnown RBP20.7■□□□□ 0.9
PCDH1-203ENST00000394536 STK26Q9P289 416 aa20.7■□□□□ 0.9
PCDH1-203ENST00000394536 NUP153P49790 1475 aaKnown RBP20.7■□□□□ 0.9
PCDH1-203ENST00000394536 MRC2Q9UBG0 1479 aa20.69■□□□□ 0.9
PCDH1-203ENST00000394536 TEX14Q8IWB6 1497 aa20.69■□□□□ 0.9
PCDH1-203ENST00000394536 GZF1Q9H116 711 aaPredicted RBP20.69■□□□□ 0.9
PCDH1-203ENST00000394536 SPATA31E1Q6ZUB1 1445 aa20.69■□□□□ 0.9
PCDH1-203ENST00000394536 CFAP70Q5T0N1 1121 aa20.68■□□□□ 0.9
PCDH1-203ENST00000394536 KANK1Q14678 1352 aa20.67■□□□□ 0.9
PCDH1-203ENST00000394536 SLC24A1O60721 1099 aa20.67■□□□□ 0.9
PCDH1-203ENST00000394536 E9PSI1 815 aa20.66■□□□□ 0.9
PCDH1-203ENST00000394536 BRPF3Q9ULD4 1205 aa20.66■□□□□ 0.9
PCDH1-203ENST00000394536 PZPP20742 1482 aa20.65■□□□□ 0.9
PCDH1-203ENST00000394536 MAPK8IP3Q9UPT6 1336 aa20.65■□□□□ 0.9
PCDH1-203ENST00000394536 IFT140Q96RY7 1462 aa20.64■□□□□ 0.89
PCDH1-203ENST00000394536 WASHC2CQ9Y4E1 1318 aa20.64■□□□□ 0.89
PCDH1-203ENST00000394536 SRPK2P78362 688 aaKnown RBP20.64■□□□□ 0.89
PCDH1-203ENST00000394536 DISP3Q9P2K9 1392 aa20.63■□□□□ 0.89
PCDH1-203ENST00000394536 FRAT2O75474 233 aaPredicted RBP20.63■□□□□ 0.89
PCDH1-203ENST00000394536 DENND4BO75064 1496 aaPredicted RBP20.63■□□□□ 0.89
PCDH1-203ENST00000394536 ERBINQ96RT1 1412 aa20.62■□□□□ 0.89
PCDH1-203ENST00000394536 ANO8Q9HCE9 1232 aaPredicted RBP20.62■□□□□ 0.89
PCDH1-203ENST00000394536 SAMD9Q5K651 1589 aa20.62■□□□□ 0.89
PCDH1-203ENST00000394536 MFAP1P55081 439 aaKnown RBP20.6■□□□□ 0.89
PCDH1-203ENST00000394536 GRIN2AQ12879 1464 aa20.6■□□□□ 0.89
PCDH1-203ENST00000394536 PER1O15534 1290 aaPredicted RBP20.6■□□□□ 0.89
PCDH1-203ENST00000394536 RNF123Q5XPI4 1314 aa20.6■□□□□ 0.89
PCDH1-203ENST00000394536 ITPRIPQ8IWB1 547 aa20.59■□□□□ 0.89
PCDH1-203ENST00000394536 POGKQ9P215 609 aa20.59■□□□□ 0.89
PCDH1-203ENST00000394536 WDR62O43379 1518 aa20.59■□□□□ 0.89
PCDH1-203ENST00000394536 RWDD1Q9H446 243 aaPredicted RBP20.59■□□□□ 0.89
PCDH1-203ENST00000394536 EIF3AQ14152 1382 aaKnown RBP20.59■□□□□ 0.89
PCDH1-203ENST00000394536 MAGI1Q96QZ7 1491 aaPredicted RBP20.58■□□□□ 0.89
PCDH1-203ENST00000394536 TMEM132EQ6IEE7 984 aa20.58■□□□□ 0.89
PCDH1-203ENST00000394536 SMC4Q9NTJ3 1288 aa20.58■□□□□ 0.88
PCDH1-203ENST00000394536 DUSP27Q5VZP5 1158 aa20.57■□□□□ 0.88
PCDH1-203ENST00000394536 CGNL1Q0VF96 1302 aa20.57■□□□□ 0.88
PCDH1-203ENST00000394536 PMFBP1Q8TBY8 1022 aa20.56■□□□□ 0.88
PCDH1-203ENST00000394536 TESK2Q96S53 571 aa20.55■□□□□ 0.88
PCDH1-203ENST00000394536 ARHGAP5Q13017 1502 aa20.55■□□□□ 0.88
PCDH1-203ENST00000394536 KDM5BQ9UGL1 1544 aa20.55■□□□□ 0.88
PCDH1-203ENST00000394536 SYNJ2O15056 1496 aa20.55■□□□□ 0.88
PCDH1-203ENST00000394536 SLC12A5Q9H2X9 1139 aa20.54■□□□□ 0.88
PCDH1-203ENST00000394536 SLFN5Q08AF3 891 aa20.54■□□□□ 0.88
PCDH1-203ENST00000394536 RALGAPBQ86X10 1494 aa20.54■□□□□ 0.88
PCDH1-203ENST00000394536 TCP11L2Q8N4U5 519 aa20.53■□□□□ 0.88
PCDH1-203ENST00000394536 MYH16Q9H6N6 1097 aa20.53■□□□□ 0.88
PCDH1-203ENST00000394536 LRPPRCP42704 1394 aaKnown RBP20.52■□□□□ 0.88
PCDH1-203ENST00000394536 PARD3Q8TEW0 1356 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms