RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 SKAP1Q86WV1 359 aa18.09■□□□□ 0.49
RTF1-201ENST00000389629 BIVM-ERCC5R4GMW8 1640 aa18.09■□□□□ 0.49
RTF1-201ENST00000389629 MAPK8IP3Q9UPT6 1336 aa18.09■□□□□ 0.49
RTF1-201ENST00000389629 CCDC144AA2RUR9 1427 aa18.09■□□□□ 0.49
RTF1-201ENST00000389629 CENPJQ9HC77 1338 aaPredicted RBP18.08■□□□□ 0.49
RTF1-201ENST00000389629 STAG3Q9UJ98 1225 aa18.07■□□□□ 0.48
RTF1-201ENST00000389629 APAF1O14727 1248 aa18.07■□□□□ 0.48
RTF1-201ENST00000389629 GBP4Q96PP9 640 aa18.07■□□□□ 0.48
RTF1-201ENST00000389629 RWDD1Q9H446 243 aaPredicted RBP18.07■□□□□ 0.48
RTF1-201ENST00000389629 NCOA1Q15788 1441 aa18.06■□□□□ 0.48
RTF1-201ENST00000389629 EHBP1L1Q8N3D4 1523 aa18.06■□□□□ 0.48
RTF1-201ENST00000389629 COG6Q9Y2V7 657 aa18.06■□□□□ 0.48
RTF1-201ENST00000389629 PTPRKQ15262 1439 aa18.06■□□□□ 0.48
RTF1-201ENST00000389629 CARMIL2Q6F5E8 1435 aa18.05■□□□□ 0.48
RTF1-201ENST00000389629 PMFBP1Q8TBY8 1022 aa18.05■□□□□ 0.48
RTF1-201ENST00000389629 ADAMTS8Q9UP79 889 aa18.05■□□□□ 0.48
RTF1-201ENST00000389629 RRP7AQ9Y3A4 280 aaKnown RBP18.04■□□□□ 0.48
RTF1-201ENST00000389629 BCL2L13Q9BXK5 485 aa18.04■□□□□ 0.48
RTF1-201ENST00000389629 HMGXB3Q12766 1538 aa18.03■□□□□ 0.48
RTF1-201ENST00000389629 PTPN23Q9H3S7 1636 aa18.02■□□□□ 0.48
RTF1-201ENST00000389629 ANKRD50Q9ULJ7 1429 aa18.02■□□□□ 0.48
RTF1-201ENST00000389629 PKNOX2Q96KN3 472 aa18.02■□□□□ 0.48
RTF1-201ENST00000389629 ANKRD30BQ9BXX2 1392 aa18.01■□□□□ 0.47
RTF1-201ENST00000389629 U2AF1L5P0DN76 240 aaPredicted RBP18.01■□□□□ 0.47
RTF1-201ENST00000389629 U2AF1Q01081 240 aaKnown RBP eCLIP18.01■□□□□ 0.47
RTF1-201ENST00000389629 SUPT6HQ7KZ85 1726 aaKnown RBP18■□□□□ 0.47
RTF1-201ENST00000389629 MIA2Q96PC5 1412 aa18■□□□□ 0.47
RTF1-201ENST00000389629 AQRO60306 1485 aaKnown RBP eCLIP18■□□□□ 0.473e-7■■■■□ 20.3
RTF1-201ENST00000389629 POLA1P09884 1462 aaPredicted RBP18■□□□□ 0.47
RTF1-201ENST00000389629 AMER1Q5JTC6 1135 aaPredicted RBP18■□□□□ 0.47
RTF1-201ENST00000389629 ITPRIPQ8IWB1 547 aa18■□□□□ 0.47
RTF1-201ENST00000389629 NBPF1Q3BBV0 1214 aa17.99■□□□□ 0.47
RTF1-201ENST00000389629 UNC13AQ9UPW8 1703 aa17.99■□□□□ 0.47
RTF1-201ENST00000389629 E9PSI1 815 aa17.99■□□□□ 0.47
RTF1-201ENST00000389629 FAM43AQ8N2R8 423 aa17.98■□□□□ 0.47
RTF1-201ENST00000389629 JPH4Q96JJ6 628 aa17.98■□□□□ 0.47
RTF1-201ENST00000389629 KIAA1107Q9UPP5 1409 aa17.98■□□□□ 0.47
RTF1-201ENST00000389629 SAFB2Q14151 953 aaKnown RBP eCLIP17.97■□□□□ 0.47
RTF1-201ENST00000389629 CGNL1Q0VF96 1302 aa17.97■□□□□ 0.47
RTF1-201ENST00000389629 DAPK1P53355 1430 aa17.96■□□□□ 0.47
RTF1-201ENST00000389629 CASC1Q6TDU7 716 aa17.95■□□□□ 0.46
RTF1-201ENST00000389629 SMC4Q9NTJ3 1288 aa17.95■□□□□ 0.46
RTF1-201ENST00000389629 TOPBP1Q92547 1522 aa17.95■□□□□ 0.46
RTF1-201ENST00000389629 NESP48681 1621 aa17.94■□□□□ 0.46
RTF1-201ENST00000389629 PANK1Q8TE04 598 aa17.93■□□□□ 0.46
RTF1-201ENST00000389629 PRDM2Q13029 1718 aa17.93■□□□□ 0.46
RTF1-201ENST00000389629 DDX11L8A8MPP1 907 aa17.93■□□□□ 0.46
RTF1-201ENST00000389629 RSPH4AQ5TD94 716 aa17.93■□□□□ 0.46
RTF1-201ENST00000389629 CDK13Q14004 1512 aaKnown RBP17.93■□□□□ 0.46
RTF1-201ENST00000389629 NPM1P06748 294 aaKnown RBP eCLIP17.92■□□□□ 0.46
RTF1-201ENST00000389629 APBB1O00213 710 aa17.92■□□□□ 0.46
RTF1-201ENST00000389629 ERCC6Q03468 1493 aa17.92■□□□□ 0.46
RTF1-201ENST00000389629 KANK1Q14678 1352 aa17.91■□□□□ 0.46
RTF1-201ENST00000389629 C20orf194Q5TEA3 1177 aa17.91■□□□□ 0.46
RTF1-201ENST00000389629 FAM13BQ9NYF5 915 aa17.91■□□□□ 0.46
RTF1-201ENST00000389629 EIF3AQ14152 1382 aaKnown RBP17.91■□□□□ 0.46
RTF1-201ENST00000389629 CALD1Q05682 793 aaKnown RBP17.9■□□□□ 0.46
RTF1-201ENST00000389629 POGKQ9P215 609 aa17.9■□□□□ 0.46
RTF1-201ENST00000389629 RPRD2Q5VT52 1461 aaKnown RBP17.9■□□□□ 0.46
RTF1-201ENST00000389629 PPP2R1AP30153 589 aa17.89■□□□□ 0.45
RTF1-201ENST00000389629 DDX49Q9Y6V7 483 aaKnown RBP17.89■□□□□ 0.45
RTF1-201ENST00000389629 SRPK2P78362 688 aaKnown RBP17.89■□□□□ 0.45
RTF1-201ENST00000389629 EPRSP07814 1512 aaKnown RBP17.88■□□□□ 0.45
RTF1-201ENST00000389629 BCAR3O75815 825 aa17.88■□□□□ 0.45
RTF1-201ENST00000389629 CHMP5Q9NZZ3 219 aa17.88■□□□□ 0.45
RTF1-201ENST00000389629 IPO8O15397 1037 aaKnown RBP17.88■□□□□ 0.45
RTF1-201ENST00000389629 ABCA10Q8WWZ4 1543 aa17.87■□□□□ 0.45
RTF1-201ENST00000389629 EFCAB2Q5VUJ9 269 aa17.87■□□□□ 0.45
RTF1-201ENST00000389629 PRG4Q92954 1404 aaPredicted RBP17.87■□□□□ 0.45
RTF1-201ENST00000389629 CDK11BP21127 795 aaKnown RBP17.87■□□□□ 0.45
RTF1-201ENST00000389629 CHMP4BQ9H444 224 aaKnown RBP17.87■□□□□ 0.45
RTF1-201ENST00000389629 ROCK1Q13464 1354 aa17.86■□□□□ 0.45
RTF1-201ENST00000389629 UBE2Q2Q8WVN8 375 aa17.86■□□□□ 0.45
RTF1-201ENST00000389629 PTMSP20962 102 aa17.86■□□□□ 0.45
RTF1-201ENST00000389629 FOXD4L5Q5VV16 416 aaPredicted RBP17.86■□□□□ 0.45
RTF1-201ENST00000389629 FOXD4L4Q8WXT5 416 aaPredicted RBP17.86■□□□□ 0.45
RTF1-201ENST00000389629 HECW1Q76N89 1606 aa17.85■□□□□ 0.45
RTF1-201ENST00000389629 KIF3BO15066 747 aa17.85■□□□□ 0.45
RTF1-201ENST00000389629 TRAK2O60296 914 aa17.84■□□□□ 0.45
RTF1-201ENST00000389629 TRAK1Q9UPV9 953 aa17.84■□□□□ 0.45
RTF1-201ENST00000389629 ABCC5O15440 1437 aa17.84■□□□□ 0.45
RTF1-201ENST00000389629 CHAF1AQ13111 956 aaPredicted RBP17.84■□□□□ 0.45
RTF1-201ENST00000389629 WASHC2CQ9Y4E1 1318 aa17.84■□□□□ 0.45
RTF1-201ENST00000389629 STK26Q9P289 416 aa17.84■□□□□ 0.45
RTF1-201ENST00000389629 KIAA2012Q0VF49 1180 aa17.83■□□□□ 0.44
RTF1-201ENST00000389629 MRE11P49959 708 aa17.83■□□□□ 0.44
RTF1-201ENST00000389629 DNMBPQ6XZF7 1577 aa17.83■□□□□ 0.44
RTF1-201ENST00000389629 ZKSCAN2Q63HK3 967 aa17.82■□□□□ 0.44
RTF1-201ENST00000389629 GGT6Q6P531 493 aa17.8■□□□□ 0.44
RTF1-201ENST00000389629 C22orf23Q9BZE7 217 aa17.8■□□□□ 0.44
RTF1-201ENST00000389629 SPAG9O60271 1321 aaKnown RBP17.8■□□□□ 0.44
RTF1-201ENST00000389629 NUTM2DQ5VT03 806 aaPredicted RBP17.78■□□□□ 0.44
RTF1-201ENST00000389629 C9orf84Q5VXU9 1444 aa17.78■□□□□ 0.44
RTF1-201ENST00000389629 NOL8Q76FK4 1167 aaKnown RBP17.78■□□□□ 0.44
RTF1-201ENST00000389629 SKOR2Q2VWA4 1001 aaPredicted RBP17.77■□□□□ 0.44
RTF1-201ENST00000389629 CFAP43Q8NDM7 1665 aa17.77■□□□□ 0.43
RTF1-201ENST00000389629 RBM10P98175 930 aaKnown RBP17.77■□□□□ 0.43
RTF1-201ENST00000389629 DZIP1LQ8IYY4 767 aaKnown RBP17.77■□□□□ 0.43
RTF1-201ENST00000389629 TROQ12816 1431 aaPredicted RBP17.76■□□□□ 0.43
RTF1-201ENST00000389629 ESF1Q9H501 851 aaKnown RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms