RNA–Protein interactions for RNA: ENST00000389328.8

TRAPPC9-201, Transcript of trafficking protein particle complex 9, humanhuman

TSL 2 BASIC

Gene TRAPPC9, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-201ENST00000389328 ARID3AQ99856 593 aa16.66■□□□□ 0.26
TRAPPC9-201ENST00000389328 GBP4Q96PP9 640 aa16.65■□□□□ 0.26
TRAPPC9-201ENST00000389328 SAFB2Q14151 953 aaKnown RBP eCLIP16.65■□□□□ 0.262e-7■■■■□ 23
TRAPPC9-201ENST00000389328 ZBTB7CA1YPR0 619 aa16.64■□□□□ 0.25
TRAPPC9-201ENST00000389328 PLCB2Q00722 1185 aa16.63■□□□□ 0.25
TRAPPC9-201ENST00000389328 HSP90AA2PQ14568 343 aaPredicted RBP16.62■□□□□ 0.25
TRAPPC9-201ENST00000389328 VSIG10Q8N0Z9 540 aa16.62■□□□□ 0.25
TRAPPC9-201ENST00000389328 SMC4Q9NTJ3 1288 aa16.62■□□□□ 0.25
TRAPPC9-201ENST00000389328 CCDC144AA2RUR9 1427 aa16.62■□□□□ 0.25
TRAPPC9-201ENST00000389328 E9PSI1 815 aa16.61■□□□□ 0.25
TRAPPC9-201ENST00000389328 CASC1Q6TDU7 716 aa16.61■□□□□ 0.25
TRAPPC9-201ENST00000389328 CGNL1Q0VF96 1302 aa16.61■□□□□ 0.25
TRAPPC9-201ENST00000389328 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.6■□□□□ 0.252e-6■■■■■ 42.3
TRAPPC9-201ENST00000389328 APBB1O00213 710 aa16.59■□□□□ 0.25
TRAPPC9-201ENST00000389328 PANK1Q8TE04 598 aa16.59■□□□□ 0.25
TRAPPC9-201ENST00000389328 NBPF1Q3BBV0 1214 aa16.57■□□□□ 0.24
TRAPPC9-201ENST00000389328 NCAPD3P42695 1498 aa16.56■□□□□ 0.24
TRAPPC9-201ENST00000389328 IPO8O15397 1037 aaKnown RBP16.55■□□□□ 0.24
TRAPPC9-201ENST00000389328 NPM1P06748 294 aaKnown RBP eCLIP16.54■□□□□ 0.24
TRAPPC9-201ENST00000389328 SRPK2P78362 688 aaKnown RBP16.54■□□□□ 0.24
TRAPPC9-201ENST00000389328 NCOA1Q15788 1441 aa16.54■□□□□ 0.24
TRAPPC9-201ENST00000389328 PDS5BQ9NTI5 1447 aa16.54■□□□□ 0.24
TRAPPC9-201ENST00000389328 C20orf194Q5TEA3 1177 aa16.54■□□□□ 0.24
TRAPPC9-201ENST00000389328 CHMP4BQ9H444 224 aaKnown RBP16.54■□□□□ 0.24
TRAPPC9-201ENST00000389328 POGKQ9P215 609 aa16.54■□□□□ 0.24
TRAPPC9-201ENST00000389328 BCAR3O75815 825 aa16.53■□□□□ 0.24
TRAPPC9-201ENST00000389328 PCF11O94913 1555 aaKnown RBP16.52■□□□□ 0.24
TRAPPC9-201ENST00000389328 DDX11L8A8MPP1 907 aa16.52■□□□□ 0.24
TRAPPC9-201ENST00000389328 CARMIL2Q6F5E8 1435 aa16.52■□□□□ 0.24
TRAPPC9-201ENST00000389328 GAPVD1Q14C86 1478 aa16.52■□□□□ 0.24
TRAPPC9-201ENST00000389328 ANKRD50Q9ULJ7 1429 aa16.52■□□□□ 0.23
TRAPPC9-201ENST00000389328 MIA2Q96PC5 1412 aa16.51■□□□□ 0.23
TRAPPC9-201ENST00000389328 CHMP5Q9NZZ3 219 aa16.5■□□□□ 0.23
TRAPPC9-201ENST00000389328 STK26Q9P289 416 aa16.5■□□□□ 0.23
TRAPPC9-201ENST00000389328 JPH4Q96JJ6 628 aa16.5■□□□□ 0.23
TRAPPC9-201ENST00000389328 CALD1Q05682 793 aaKnown RBP16.49■□□□□ 0.23
TRAPPC9-201ENST00000389328 ANKRD30BQ9BXX2 1392 aa16.49■□□□□ 0.23
TRAPPC9-201ENST00000389328 MAP3K1Q13233 1512 aa16.49■□□□□ 0.23
TRAPPC9-201ENST00000389328 PTPRKQ15262 1439 aa16.48■□□□□ 0.23
TRAPPC9-201ENST00000389328 PPP2R1AP30153 589 aa16.48■□□□□ 0.23
TRAPPC9-201ENST00000389328 ZKSCAN2Q63HK3 967 aa16.48■□□□□ 0.23
TRAPPC9-201ENST00000389328 TRAK1Q9UPV9 953 aa16.48■□□□□ 0.23
TRAPPC9-201ENST00000389328 DDX49Q9Y6V7 483 aaKnown RBP16.48■□□□□ 0.23
TRAPPC9-201ENST00000389328 FAM43AQ8N2R8 423 aa16.47■□□□□ 0.23
TRAPPC9-201ENST00000389328 KANK1Q14678 1352 aa16.47■□□□□ 0.23
TRAPPC9-201ENST00000389328 EIF3AQ14152 1382 aaKnown RBP16.47■□□□□ 0.23
TRAPPC9-201ENST00000389328 PTMSP20962 102 aa16.47■□□□□ 0.23
TRAPPC9-201ENST00000389328 C22orf23Q9BZE7 217 aa16.46■□□□□ 0.23
TRAPPC9-201ENST00000389328 EFCAB5A4FU69 1503 aa16.46■□□□□ 0.23
TRAPPC9-201ENST00000389328 KIAA1107Q9UPP5 1409 aa16.46■□□□□ 0.23
TRAPPC9-201ENST00000389328 FOXD4L5Q5VV16 416 aaPredicted RBP16.46■□□□□ 0.23
TRAPPC9-201ENST00000389328 FOXD4L4Q8WXT5 416 aaPredicted RBP16.46■□□□□ 0.23
TRAPPC9-201ENST00000389328 RSPH4AQ5TD94 716 aa16.45■□□□□ 0.22
TRAPPC9-201ENST00000389328 PLPPR3Q6T4P5 718 aa16.45■□□□□ 0.22
TRAPPC9-201ENST00000389328 ESF1Q9H501 851 aaKnown RBP16.45■□□□□ 0.22
TRAPPC9-201ENST00000389328 KIF3BO15066 747 aa16.45■□□□□ 0.22
TRAPPC9-201ENST00000389328 ANKRD45Q5TZF3 282 aa16.45■□□□□ 0.22
TRAPPC9-201ENST00000389328 GGT6Q6P531 493 aa16.44■□□□□ 0.22
TRAPPC9-201ENST00000389328 AQRO60306 1485 aaKnown RBP eCLIP16.44■□□□□ 0.224e-6■■■■□ 26.3
TRAPPC9-201ENST00000389328 ELL2O00472 640 aaPredicted RBP16.44■□□□□ 0.22
TRAPPC9-201ENST00000389328 TRAK2O60296 914 aa16.43■□□□□ 0.22
TRAPPC9-201ENST00000389328 NUTM2DQ5VT03 806 aaPredicted RBP16.43■□□□□ 0.22
TRAPPC9-201ENST00000389328 EFCAB2Q5VUJ9 269 aa16.43■□□□□ 0.22
TRAPPC9-201ENST00000389328 DZIP1LQ8IYY4 767 aaKnown RBP16.43■□□□□ 0.22
TRAPPC9-201ENST00000389328 EHBP1L1Q8N3D4 1523 aa16.43■□□□□ 0.22
TRAPPC9-201ENST00000389328 PDZRN3Q9UPQ7 1066 aa16.42■□□□□ 0.22
TRAPPC9-201ENST00000389328 NOL8Q76FK4 1167 aaKnown RBP16.41■□□□□ 0.22
TRAPPC9-201ENST00000389328 LNPKQ9C0E8 428 aa16.41■□□□□ 0.22
TRAPPC9-201ENST00000389328 DAPK1P53355 1430 aa16.4■□□□□ 0.22
TRAPPC9-201ENST00000389328 PTPN23Q9H3S7 1636 aa16.4■□□□□ 0.22
TRAPPC9-201ENST00000389328 MRE11P49959 708 aa16.4■□□□□ 0.22
TRAPPC9-201ENST00000389328 WASHC2CQ9Y4E1 1318 aa16.4■□□□□ 0.22
TRAPPC9-201ENST00000389328 PLEKHG5O94827 1062 aa16.39■□□□□ 0.21
TRAPPC9-201ENST00000389328 SOX12O15370 315 aa16.39■□□□□ 0.21
TRAPPC9-201ENST00000389328 SKOR2Q2VWA4 1001 aaPredicted RBP16.38■□□□□ 0.21
TRAPPC9-201ENST00000389328 RUNDC1Q96C34 613 aa16.37■□□□□ 0.21
TRAPPC9-201ENST00000389328 KIAA2012Q0VF49 1180 aa16.37■□□□□ 0.21
TRAPPC9-201ENST00000389328 PDE3AQ14432 1141 aa16.37■□□□□ 0.21
TRAPPC9-201ENST00000389328 TCP11L2Q8N4U5 519 aa16.37■□□□□ 0.21
TRAPPC9-201ENST00000389328 DDX19BQ9UMR2 479 aa16.37■□□□□ 0.21
TRAPPC9-201ENST00000389328 ERCC6Q03468 1493 aa16.37■□□□□ 0.21
TRAPPC9-201ENST00000389328 SPAG9O60271 1321 aaKnown RBP16.36■□□□□ 0.21
TRAPPC9-201ENST00000389328 FOXD4L6Q3SYB3 417 aaPredicted RBP16.36■□□□□ 0.21
TRAPPC9-201ENST00000389328 FOXD4L3Q6VB84 417 aaPredicted RBP16.36■□□□□ 0.21
TRAPPC9-201ENST00000389328 NGEFQ8N5V2 710 aa16.36■□□□□ 0.21
TRAPPC9-201ENST00000389328 MCCP23508 829 aa16.36■□□□□ 0.21
TRAPPC9-201ENST00000389328 FAM13BQ9NYF5 915 aa16.36■□□□□ 0.21
TRAPPC9-201ENST00000389328 CHAF1AQ13111 956 aaPredicted RBP16.35■□□□□ 0.21
TRAPPC9-201ENST00000389328 CFAP44Q96MT7 982 aa16.35■□□□□ 0.21
TRAPPC9-201ENST00000389328 RPRD2Q5VT52 1461 aaKnown RBP16.35■□□□□ 0.21
TRAPPC9-201ENST00000389328 POLA1P09884 1462 aaPredicted RBP16.35■□□□□ 0.21
TRAPPC9-201ENST00000389328 SUPT6HQ7KZ85 1726 aaKnown RBP16.35■□□□□ 0.21
TRAPPC9-201ENST00000389328 CDK13Q14004 1512 aaKnown RBP16.34■□□□□ 0.21
TRAPPC9-201ENST00000389328 PRG4Q92954 1404 aaPredicted RBP16.34■□□□□ 0.21
TRAPPC9-201ENST00000389328 SLFN5Q08AF3 891 aa16.33■□□□□ 0.21
TRAPPC9-201ENST00000389328 HDGFL2Q7Z4V5 671 aaPredicted RBP16.33■□□□□ 0.21
TRAPPC9-201ENST00000389328 MCM4P33991 863 aa16.33■□□□□ 0.2
TRAPPC9-201ENST00000389328 KCNJ4P48050 445 aa16.32■□□□□ 0.2
TRAPPC9-201ENST00000389328 ST18O60284 1047 aa16.32■□□□□ 0.2
TRAPPC9-201ENST00000389328 C14orf37Q86TY3 774 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms