RNA–Protein interactions for RNA: ENST00000389328.8

TRAPPC9-201, Transcript of trafficking protein particle complex 9, humanhuman

TSL 2 BASIC

Gene TRAPPC9, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-201ENST00000389328 NISCHQ9Y2I1 1504 aa23.02■■□□□ 1.28
TRAPPC9-201ENST00000389328 SUPT5HO00267 1087 aaKnown RBP22.14■■□□□ 1.14
TRAPPC9-201ENST00000389328 DCAF8L2P0C7V8 631 aa22.1■■□□□ 1.13
TRAPPC9-201ENST00000389328 SHROOM4Q9ULL8 1493 aa21.91■■□□□ 1.1
TRAPPC9-201ENST00000389328 PCGF6Q9BYE7 350 aa21.39■■□□□ 1.01
TRAPPC9-201ENST00000389328 EHMT2Q96KQ7 1210 aa21.09■□□□□ 0.97
TRAPPC9-201ENST00000389328 HRCP23327 699 aa20.92■□□□□ 0.94
TRAPPC9-201ENST00000389328 FAM9AQ8IZU1 332 aaPredicted RBP20.75■□□□□ 0.91
TRAPPC9-201ENST00000389328 PPARGC1BQ86YN6 1023 aaKnown RBP20.69■□□□□ 0.9
TRAPPC9-201ENST00000389328 CHIC1Q5VXU3 224 aa20.57■□□□□ 0.88
TRAPPC9-201ENST00000389328 PELP1Q8IZL8 1130 aaKnown RBP20.53■□□□□ 0.88
TRAPPC9-201ENST00000389328 ZEB1P37275 1124 aaPredicted RBP20.52■□□□□ 0.87
TRAPPC9-201ENST00000389328 LOC105371045A0A1W2PR82 267 aa20.48■□□□□ 0.87
TRAPPC9-201ENST00000389328 TTBK1Q5TCY1 1321 aaPredicted RBP20.46■□□□□ 0.87
TRAPPC9-201ENST00000389328 TRIM26Q12899 539 aaPredicted RBP20.41■□□□□ 0.86
TRAPPC9-201ENST00000389328 TRIM41Q8WV44 630 aa20.37■□□□□ 0.85
TRAPPC9-201ENST00000389328 CCER1Q8TC90 406 aaPredicted RBP20.32■□□□□ 0.84
TRAPPC9-201ENST00000389328 CENPBP07199 599 aaPredicted RBP20.29■□□□□ 0.84
TRAPPC9-201ENST00000389328 YTHDC1Q96MU7 727 aaKnown RBP20.07■□□□□ 0.8
TRAPPC9-201ENST00000389328 APLP2Q06481 763 aa19.97■□□□□ 0.79
TRAPPC9-201ENST00000389328 MYT1Q01538 1121 aa19.87■□□□□ 0.77
TRAPPC9-201ENST00000389328 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.84■□□□□ 0.77
TRAPPC9-201ENST00000389328 RANGAP1P46060 587 aaPredicted RBP19.83■□□□□ 0.77
TRAPPC9-201ENST00000389328 UBTFP17480 764 aaKnown RBP19.78■□□□□ 0.76
TRAPPC9-201ENST00000389328 DIEXFQ68CQ4 756 aaKnown RBP19.7■□□□□ 0.74
TRAPPC9-201ENST00000389328 MYO15BQ96JP2 1530 aa19.65■□□□□ 0.74
TRAPPC9-201ENST00000389328 GTF3C3Q9Y5Q9 886 aa19.65■□□□□ 0.74
TRAPPC9-201ENST00000389328 HNRNPUL2Q1KMD3 747 aaKnown RBP19.51■□□□□ 0.71
TRAPPC9-201ENST00000389328 ACIN1Q9UKV3 1341 aaKnown RBP19.51■□□□□ 0.71
TRAPPC9-201ENST00000389328 DCAF1Q9Y4B6 1507 aa19.5■□□□□ 0.71
TRAPPC9-201ENST00000389328 SCAF1Q9H7N4 1312 aaKnown RBP19.5■□□□□ 0.71
TRAPPC9-201ENST00000389328 ERICH6Q7L0X2 663 aa19.37■□□□□ 0.69
TRAPPC9-201ENST00000389328 NEUROD1Q13562 356 aa19.33■□□□□ 0.69
TRAPPC9-201ENST00000389328 NEFLP07196 543 aa19.32■□□□□ 0.68
TRAPPC9-201ENST00000389328 ZCCHC6Q5VYS8 1495 aaKnown RBP19.28■□□□□ 0.68
TRAPPC9-201ENST00000389328 ATP1B4Q9UN42 357 aaPredicted RBP19.23■□□□□ 0.67
TRAPPC9-201ENST00000389328 ITGAEP38570 1179 aa19.23■□□□□ 0.67
TRAPPC9-201ENST00000389328 ZNF316A6NFI3 1004 aaPredicted RBP19.23■□□□□ 0.67
TRAPPC9-201ENST00000389328 BCANQ96GW7 911 aa19.05■□□□□ 0.64
TRAPPC9-201ENST00000389328 CCDC180Q9P1Z9 1646 aa18.93■□□□□ 0.62
TRAPPC9-201ENST00000389328 MIER1Q8N108 512 aa18.88■□□□□ 0.61
TRAPPC9-201ENST00000389328 CSRNP3Q8WYN3 585 aa18.85■□□□□ 0.61
TRAPPC9-201ENST00000389328 CNGB1Q14028 1251 aaPredicted RBP18.74■□□□□ 0.59
TRAPPC9-201ENST00000389328 ABCC9O60706 1549 aa18.71■□□□□ 0.59
TRAPPC9-201ENST00000389328 SCRIBQ14160 1630 aa18.69■□□□□ 0.58
TRAPPC9-201ENST00000389328 FAM50AQ14320 339 aaKnown RBP18.68■□□□□ 0.58
TRAPPC9-201ENST00000389328 RSF1Q96T23 1441 aaPredicted RBP18.68■□□□□ 0.58
TRAPPC9-201ENST00000389328 POLR3GLQ9BT43 218 aa18.65■□□□□ 0.58
TRAPPC9-201ENST00000389328 FKBP8Q14318 412 aa18.63■□□□□ 0.57
TRAPPC9-201ENST00000389328 PABPN1Q86U42 306 aaKnown RBP eCLIP18.62■□□□□ 0.57
TRAPPC9-201ENST00000389328 ANP32CO43423 234 aa18.6■□□□□ 0.57
TRAPPC9-201ENST00000389328 CLSPNQ9HAW4 1339 aa18.55■□□□□ 0.56
TRAPPC9-201ENST00000389328 CDK11AQ9UQ88 783 aaPredicted RBP18.53■□□□□ 0.56
TRAPPC9-201ENST00000389328 DDX10Q13206 875 aaKnown RBP18.51■□□□□ 0.55
TRAPPC9-201ENST00000389328 CEP162Q5TB80 1403 aa18.49■□□□□ 0.55
TRAPPC9-201ENST00000389328 TRIM52Q96A61 297 aa18.45■□□□□ 0.54
TRAPPC9-201ENST00000389328 RTL5Q5HYW3 569 aaPredicted RBP18.44■□□□□ 0.54
TRAPPC9-201ENST00000389328 SUPT16HQ9Y5B9 1047 aaKnown RBP18.37■□□□□ 0.53
TRAPPC9-201ENST00000389328 P3H3Q8IVL6 736 aa18.35■□□□□ 0.53
TRAPPC9-201ENST00000389328 ANP32EQ9BTT0 268 aa18.35■□□□□ 0.53
TRAPPC9-201ENST00000389328 HIRIP3Q9BW71 556 aaPredicted RBP18.35■□□□□ 0.53
TRAPPC9-201ENST00000389328 DAXXQ9UER7 740 aaPredicted RBP18.35■□□□□ 0.53
TRAPPC9-201ENST00000389328 CLIP1P30622 1438 aa18.33■□□□□ 0.52
TRAPPC9-201ENST00000389328 HNRNPUQ00839 825 aaKnown RBP eCLIP18.31■□□□□ 0.52
TRAPPC9-201ENST00000389328 TNIKQ9UKE5 1360 aa18.29■□□□□ 0.52
TRAPPC9-201ENST00000389328 RB1CC1Q8TDY2 1594 aa18.28■□□□□ 0.52
TRAPPC9-201ENST00000389328 IRX6P78412 446 aaPredicted RBP18.27■□□□□ 0.52
TRAPPC9-201ENST00000389328 CECR2Q9BXF3 1484 aa18.23■□□□□ 0.51
TRAPPC9-201ENST00000389328 GOLGA3Q08378 1498 aa18.21■□□□□ 0.51
TRAPPC9-201ENST00000389328 ZNF326Q5BKZ1 582 aaKnown RBP18.19■□□□□ 0.5
TRAPPC9-201ENST00000389328 SOGA1O94964 1423 aa18.18■□□□□ 0.5
TRAPPC9-201ENST00000389328 TONSLQ96HA7 1378 aa18.16■□□□□ 0.5
TRAPPC9-201ENST00000389328 FAM9BQ8IZU0 186 aa18.15■□□□□ 0.5
TRAPPC9-201ENST00000389328 EEA1Q15075 1411 aa18.15■□□□□ 0.5
TRAPPC9-201ENST00000389328 NBR1Q14596 966 aa18.13■□□□□ 0.49
TRAPPC9-201ENST00000389328 ANP32AP39687 249 aaKnown RBP18.11■□□□□ 0.49
TRAPPC9-201ENST00000389328 NPM2Q86SE8 214 aaKnown RBP18.1■□□□□ 0.49
TRAPPC9-201ENST00000389328 TSHZ2Q9NRE2 1034 aa18.1■□□□□ 0.49
TRAPPC9-201ENST00000389328 BCL11AQ9H165 835 aa18.08■□□□□ 0.48
TRAPPC9-201ENST00000389328 WRNQ14191 1432 aaPredicted RBP eCLIP18.05■□□□□ 0.488e-10■■■■■ 68.9
TRAPPC9-201ENST00000389328 SIN3AQ96ST3 1273 aa18.05■□□□□ 0.48
TRAPPC9-201ENST00000389328 CCDC88BA6NC98 1476 aa18.04■□□□□ 0.48
TRAPPC9-201ENST00000389328 ARID3CA6NKF2 412 aa18.04■□□□□ 0.48
TRAPPC9-201ENST00000389328 MROH2BQ7Z745 1585 aa18.01■□□□□ 0.47
TRAPPC9-201ENST00000389328 ABCC8Q09428 1581 aa18■□□□□ 0.47
TRAPPC9-201ENST00000389328 RBM19Q9Y4C8 960 aaKnown RBP18■□□□□ 0.47
TRAPPC9-201ENST00000389328 CEP164Q9UPV0 1460 aa18■□□□□ 0.47
TRAPPC9-201ENST00000389328 MRS2Q9HD23 443 aa17.98■□□□□ 0.47
TRAPPC9-201ENST00000389328 CCDC136Q96JN2 1154 aa17.96■□□□□ 0.46
TRAPPC9-201ENST00000389328 CHIC2Q9UKJ5 165 aa17.95■□□□□ 0.46
TRAPPC9-201ENST00000389328 KCNH8Q96L42 1107 aa17.94■□□□□ 0.46
TRAPPC9-201ENST00000389328 MYT1LQ9UL68 1186 aa17.94■□□□□ 0.46
TRAPPC9-201ENST00000389328 SALL2Q9Y467 1007 aaPredicted RBP17.92■□□□□ 0.46
TRAPPC9-201ENST00000389328 KANK4Q5T7N3 995 aaPredicted RBP17.92■□□□□ 0.46
TRAPPC9-201ENST00000389328 SENP3-EIF4A1A0A087X0R7 540 aa17.91■□□□□ 0.46
TRAPPC9-201ENST00000389328 ZBTB47Q9UFB7 747 aaPredicted RBP17.91■□□□□ 0.46
TRAPPC9-201ENST00000389328 VPS8Q8N3P4 1428 aa17.89■□□□□ 0.45
TRAPPC9-201ENST00000389328 CCNB3Q8WWL7 1395 aa17.85■□□□□ 0.45
TRAPPC9-201ENST00000389328 EIF5BO60841 1220 aaKnown RBP17.84■□□□□ 0.45
TRAPPC9-201ENST00000389328 BAZ1AQ9NRL2 1556 aaPredicted RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms