RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SETD5Q9C0A6 1442 aa22.57■■□□□ 1.2
CCDC40-202ENST00000374876 DUOX2Q9NRD8 1548 aa22.57■■□□□ 1.2
CCDC40-202ENST00000374876 PLPPR3Q6T4P5 718 aa22.55■■□□□ 1.2
CCDC40-202ENST00000374876 MADDQ8WXG6 1647 aa22.55■■□□□ 1.2
CCDC40-202ENST00000374876 ROCK1Q13464 1354 aa22.53■■□□□ 1.2
CCDC40-202ENST00000374876 ESF1Q9H501 851 aaKnown RBP22.52■■□□□ 1.19
CCDC40-202ENST00000374876 AEBP2Q6ZN18 517 aaPredicted RBP22.5■■□□□ 1.19
CCDC40-202ENST00000374876 ERBINQ96RT1 1412 aa22.49■■□□□ 1.19
CCDC40-202ENST00000374876 RIMS1Q86UR5 1692 aaKnown RBP22.49■■□□□ 1.19
CCDC40-202ENST00000374876 FER1L4A9Z1Z3 1794 aa22.49■■□□□ 1.19
CCDC40-202ENST00000374876 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.49■■□□□ 1.19
CCDC40-202ENST00000374876 SCAF1Q9H7N4 1312 aaKnown RBP22.49■■□□□ 1.19
CCDC40-202ENST00000374876 ANKRD50Q9ULJ7 1429 aa22.49■■□□□ 1.19
CCDC40-202ENST00000374876 CENPBP07199 599 aaPredicted RBP22.48■■□□□ 1.19
CCDC40-202ENST00000374876 CEBPAP49715 358 aaPredicted RBP22.48■■□□□ 1.19
CCDC40-202ENST00000374876 ACIN1Q9UKV3 1341 aaKnown RBP22.48■■□□□ 1.19
CCDC40-202ENST00000374876 PTPRMP28827 1452 aa22.47■■□□□ 1.19
CCDC40-202ENST00000374876 EIF2AK4Q9P2K8 1649 aaKnown RBP22.46■■□□□ 1.19
CCDC40-202ENST00000374876 WASHC2CQ9Y4E1 1318 aa22.45■■□□□ 1.18
CCDC40-202ENST00000374876 PPP6R1Q9UPN7 881 aa22.43■■□□□ 1.18
CCDC40-202ENST00000374876 NEUROD1Q13562 356 aa22.42■■□□□ 1.18
CCDC40-202ENST00000374876 NAIPQ13075 1403 aa22.42■■□□□ 1.18
CCDC40-202ENST00000374876 RNF17Q9BXT8 1623 aaKnown RBP22.41■■□□□ 1.18
CCDC40-202ENST00000374876 CLTCQ00610 1675 aaKnown RBP22.41■■□□□ 1.18
CCDC40-202ENST00000374876 MIER1Q8N108 512 aa22.41■■□□□ 1.18
CCDC40-202ENST00000374876 MROH1Q8NDA8 1641 aa22.4■■□□□ 1.18
CCDC40-202ENST00000374876 ZMYM3Q14202 1370 aa22.4■■□□□ 1.18
CCDC40-202ENST00000374876 CNTLNQ9NXG0 1405 aa22.38■■□□□ 1.17
CCDC40-202ENST00000374876 HFM1A2PYH4 1435 aa22.38■■□□□ 1.17
CCDC40-202ENST00000374876 KDM5DQ9BY66 1539 aa22.36■■□□□ 1.17
CCDC40-202ENST00000374876 DEPDC5O75140 1603 aa22.35■■□□□ 1.17
CCDC40-202ENST00000374876 C3P01024 1663 aa22.34■■□□□ 1.17
CCDC40-202ENST00000374876 KANK1Q14678 1352 aa22.34■■□□□ 1.17
CCDC40-202ENST00000374876 PRDM15P57071 1507 aaPredicted RBP22.34■■□□□ 1.17
CCDC40-202ENST00000374876 ABCC3O15438 1527 aa22.34■■□□□ 1.17
CCDC40-202ENST00000374876 GCC2Q8IWJ2 1684 aa22.33■■□□□ 1.17
CCDC40-202ENST00000374876 CEP152O94986 1710 aa22.32■■□□□ 1.16
CCDC40-202ENST00000374876 FBXO31Q5XUX0 539 aaPredicted RBP22.32■■□□□ 1.16
CCDC40-202ENST00000374876 MROH2AA6NES4 1674 aa22.31■■□□□ 1.16
CCDC40-202ENST00000374876 NUP155O75694 1391 aa22.31■■□□□ 1.16
CCDC40-202ENST00000374876 TRIM52Q96A61 297 aa22.29■■□□□ 1.16
CCDC40-202ENST00000374876 UNC13BO14795 1591 aa22.28■■□□□ 1.16
CCDC40-202ENST00000374876 VWDEQ8N2E2 1590 aa22.28■■□□□ 1.16
CCDC40-202ENST00000374876 FAM135AQ9P2D6 1515 aa22.28■■□□□ 1.16
CCDC40-202ENST00000374876 YTHDC1Q96MU7 727 aaKnown RBP22.27■■□□□ 1.16
CCDC40-202ENST00000374876 ZC3H13Q5T200 1668 aaKnown RBP22.27■■□□□ 1.16
CCDC40-202ENST00000374876 CFAP65Q6ZU64 1925 aaKnown RBP22.26■■□□□ 1.15
CCDC40-202ENST00000374876 SIN3AQ96ST3 1273 aa22.25■■□□□ 1.15
CCDC40-202ENST00000374876 CAMSAP1Q5T5Y3 1602 aa22.25■■□□□ 1.15
CCDC40-202ENST00000374876 PZPP20742 1482 aa22.23■■□□□ 1.15
CCDC40-202ENST00000374876 TIMELESSQ9UNS1 1208 aa22.23■■□□□ 1.15
CCDC40-202ENST00000374876 LMTK2Q8IWU2 1503 aa22.23■■□□□ 1.15
CCDC40-202ENST00000374876 NPATQ14207 1427 aa22.21■■□□□ 1.15
CCDC40-202ENST00000374876 SETD1BQ9UPS6 1966 aaKnown RBP22.2■■□□□ 1.14
CCDC40-202ENST00000374876 IQGAP3Q86VI3 1631 aa22.2■■□□□ 1.14
CCDC40-202ENST00000374876 ARHGAP31Q2M1Z3 1444 aa22.19■■□□□ 1.14
CCDC40-202ENST00000374876 GTF3C3Q9Y5Q9 886 aa22.17■■□□□ 1.14
CCDC40-202ENST00000374876 TNRQ92752 1358 aa22.17■■□□□ 1.14
CCDC40-202ENST00000374876 EFCAB6Q5THR3 1501 aa22.17■■□□□ 1.14
CCDC40-202ENST00000374876 TET3O43151 1660 aa22.16■■□□□ 1.14
CCDC40-202ENST00000374876 SLC4A1APQ9BWU0 796 aaKnown RBP22.16■■□□□ 1.14
CCDC40-202ENST00000374876 ERVK-7P63135 1459 aa22.15■■□□□ 1.14
CCDC40-202ENST00000374876 HSPA2P54652 639 aa22.15■■□□□ 1.14
CCDC40-202ENST00000374876 UHRF1BP1Q6BDS2 1440 aa22.14■■□□□ 1.13
CCDC40-202ENST00000374876 LMTK3Q96Q04 1460 aa22.13■■□□□ 1.13
CCDC40-202ENST00000374876 E9PCH4 1651 aa22.13■■□□□ 1.13
CCDC40-202ENST00000374876 PREX1Q8TCU6 1659 aa22.13■■□□□ 1.13
CCDC40-202ENST00000374876 SPATA31D1Q6ZQQ2 1576 aa22.13■■□□□ 1.13
CCDC40-202ENST00000374876 PKD2Q13563 968 aa22.13■■□□□ 1.13
CCDC40-202ENST00000374876 MPHOSPH9Q99550 1183 aa22.11■■□□□ 1.13
CCDC40-202ENST00000374876 FOXD1Q16676 465 aa22.11■■□□□ 1.13
CCDC40-202ENST00000374876 RPRD2Q5VT52 1461 aaKnown RBP22.09■■□□□ 1.13
CCDC40-202ENST00000374876 MYO3AQ8NEV4 1616 aa22.09■■□□□ 1.13
CCDC40-202ENST00000374876 NOS1P29475 1434 aa22.08■■□□□ 1.12
CCDC40-202ENST00000374876 PPP1R15AO75807 674 aaPredicted RBP22.07■■□□□ 1.12
CCDC40-202ENST00000374876 IDI1Q13907 227 aa22.07■■□□□ 1.12
CCDC40-202ENST00000374876 TONSLQ96HA7 1378 aa22.06■■□□□ 1.12
CCDC40-202ENST00000374876 SYNMO15061 1565 aa22.05■■□□□ 1.12
CCDC40-202ENST00000374876 CEP170BQ9Y4F5 1589 aaPredicted RBP22.04■■□□□ 1.12
CCDC40-202ENST00000374876 A2ML1A8K2U0 1454 aa22.04■■□□□ 1.12
CCDC40-202ENST00000374876 NLRP1Q9C000 1473 aa22.03■■□□□ 1.12
CCDC40-202ENST00000374876 UGGT1Q9NYU2 1555 aa22.01■■□□□ 1.11
CCDC40-202ENST00000374876 SLC52A1Q9NWF4 448 aa22.01■■□□□ 1.11
CCDC40-202ENST00000374876 STAG3Q9UJ98 1225 aa22.01■■□□□ 1.11
CCDC40-202ENST00000374876 ZNF142P52746 1687 aaPredicted RBP21.99■■□□□ 1.11
CCDC40-202ENST00000374876 PTPRTO14522 1441 aa21.99■■□□□ 1.11
CCDC40-202ENST00000374876 THEMISQ8N1K5 641 aaPredicted RBP21.99■■□□□ 1.11
CCDC40-202ENST00000374876 PLA2R1Q13018 1463 aa21.98■■□□□ 1.11
CCDC40-202ENST00000374876 CHGAP10645 457 aaKnown RBP21.98■■□□□ 1.11
CCDC40-202ENST00000374876 PIK3C2BO00750 1634 aa21.97■■□□□ 1.11
CCDC40-202ENST00000374876 SPHKAPQ2M3C7 1700 aa21.97■■□□□ 1.11
CCDC40-202ENST00000374876 NCKAP5LQ9HCH0 1330 aa21.94■■□□□ 1.1
CCDC40-202ENST00000374876 UBR1Q8IWV7 1749 aa21.94■■□□□ 1.1
CCDC40-202ENST00000374876 TRPM2O94759 1503 aa21.91■■□□□ 1.1
CCDC40-202ENST00000374876 DDX10Q13206 875 aaKnown RBP21.9■■□□□ 1.1
CCDC40-202ENST00000374876 STRCQ7RTU9 1775 aa21.89■■□□□ 1.1
CCDC40-202ENST00000374876 CLTCL1P53675 1640 aa21.89■■□□□ 1.09
CCDC40-202ENST00000374876 ANKLE2Q86XL3 938 aa21.89■■□□□ 1.09
CCDC40-202ENST00000374876 ADGRB3O60242 1522 aa21.88■■□□□ 1.09
CCDC40-202ENST00000374876 MYO5BQ9ULV0 1848 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms