RNA–Protein interactions for RNA: ENST00000372396.3

KDM4A-201, Transcript of lysine demethylase 4A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KDM4A, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM4A-201ENST00000372396 NCOA1Q15788 1441 aa13.27□□□□□ -0.29
KDM4A-201ENST00000372396 EIF3AQ14152 1382 aaKnown RBP13.27□□□□□ -0.29
KDM4A-201ENST00000372396 AFAP1Q8N556 730 aa13.26□□□□□ -0.29
KDM4A-201ENST00000372396 PTPRKQ15262 1439 aa13.25□□□□□ -0.29
KDM4A-201ENST00000372396 PDE4CQ08493 712 aa13.25□□□□□ -0.29
KDM4A-201ENST00000372396 PLPPR3Q6T4P5 718 aa13.25□□□□□ -0.29
KDM4A-201ENST00000372396 HDGFP51858 240 aaKnown RBP13.24□□□□□ -0.29
KDM4A-201ENST00000372396 USP47Q96K76 1375 aa13.24□□□□□ -0.29
KDM4A-201ENST00000372396 FAM69CQ0P6D2 419 aa13.21□□□□□ -0.29
KDM4A-201ENST00000372396 MLECQ14165 292 aa13.21□□□□□ -0.29
KDM4A-201ENST00000372396 SCAPERQ9BY12 1400 aa13.21□□□□□ -0.29
KDM4A-201ENST00000372396 POGKQ9P215 609 aa13.21□□□□□ -0.3
KDM4A-201ENST00000372396 RALBP1Q15311 655 aa13.2□□□□□ -0.3
KDM4A-201ENST00000372396 ANKRD30BQ9BXX2 1392 aa13.2□□□□□ -0.3
KDM4A-201ENST00000372396 KTN1Q86UP2 1357 aaKnown RBP13.2□□□□□ -0.3
KDM4A-201ENST00000372396 ABCC2Q92887 1545 aa13.2□□□□□ -0.3
KDM4A-201ENST00000372396 IRX6P78412 446 aaPredicted RBP13.19□□□□□ -0.3
KDM4A-201ENST00000372396 HSP90AA2PQ14568 343 aaPredicted RBP13.19□□□□□ -0.3
KDM4A-201ENST00000372396 ST20-MTHFSA0A0A6YYL1 179 aa13.19□□□□□ -0.3
KDM4A-201ENST00000372396 MAPKBP1O60336 1514 aa13.18□□□□□ -0.3
KDM4A-201ENST00000372396 TRHP20396 242 aaPredicted RBP13.18□□□□□ -0.3
KDM4A-201ENST00000372396 CANXP27824 592 aaKnown RBP13.18□□□□□ -0.3
KDM4A-201ENST00000372396 PLCH2O75038 1416 aa13.18□□□□□ -0.3
KDM4A-201ENST00000372396 CFAP53Q96M91 514 aa13.17□□□□□ -0.3
KDM4A-201ENST00000372396 NPM2Q86SE8 214 aaKnown RBP13.17□□□□□ -0.3
KDM4A-201ENST00000372396 NAP1L5Q96NT1 182 aaPredicted RBP13.17□□□□□ -0.3
KDM4A-201ENST00000372396 SHANK2Q9UPX8 1470 aa13.16□□□□□ -0.3
KDM4A-201ENST00000372396 CCDC7Q96M83 1385 aa13.16□□□□□ -0.3
KDM4A-201ENST00000372396 CC2D1BQ5T0F9 858 aaKnown RBP13.16□□□□□ -0.3
KDM4A-201ENST00000372396 MAGI3Q5TCQ9 1506 aa13.16□□□□□ -0.3
KDM4A-201ENST00000372396 DNMT1P26358 1616 aaKnown RBP13.16□□□□□ -0.3
KDM4A-201ENST00000372396 PPM1GO15355 546 aaPredicted RBP13.15□□□□□ -0.3
KDM4A-201ENST00000372396 HSP90AA1P07900 732 aaKnown RBP13.15□□□□□ -0.3
KDM4A-201ENST00000372396 SENP3Q9H4L4 574 aaPredicted RBP13.15□□□□□ -0.3
KDM4A-201ENST00000372396 CD109Q6YHK3 1445 aa13.15□□□□□ -0.3
KDM4A-201ENST00000372396 ADGRL1O94910 1474 aa13.15□□□□□ -0.3
KDM4A-201ENST00000372396 ABCA8O94911 1581 aa13.14□□□□□ -0.31
KDM4A-201ENST00000372396 VGFO15240 615 aaPredicted RBP13.13□□□□□ -0.31
KDM4A-201ENST00000372396 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.13□□□□□ -0.31
KDM4A-201ENST00000372396 LAS1LQ9Y4W2 734 aaKnown RBP13.13□□□□□ -0.31
KDM4A-201ENST00000372396 FANCAO15360 1455 aa13.13□□□□□ -0.31
KDM4A-201ENST00000372396 RPRD2Q5VT52 1461 aaKnown RBP13.13□□□□□ -0.31
KDM4A-201ENST00000372396 WDR7Q9Y4E6 1490 aa13.13□□□□□ -0.31
KDM4A-201ENST00000372396 CNTLNQ9NXG0 1405 aa13.12□□□□□ -0.31
KDM4A-201ENST00000372396 NBPF8Q3BBV2 869 aa13.12□□□□□ -0.31
KDM4A-201ENST00000372396 USP35Q9P2H5 1018 aa13.12□□□□□ -0.31
KDM4A-201ENST00000372396 IPO9Q96P70 1041 aaKnown RBP13.12□□□□□ -0.31
KDM4A-201ENST00000372396 KIF7Q2M1P5 1343 aa13.11□□□□□ -0.31
KDM4A-201ENST00000372396 PPP4R2Q9NY27 417 aa13.11□□□□□ -0.31
KDM4A-201ENST00000372396 PRKRIP1Q9H875 184 aaPredicted RBP13.11□□□□□ -0.31
KDM4A-201ENST00000372396 SYCP2Q9BX26 1530 aa13.1□□□□□ -0.31
KDM4A-201ENST00000372396 ASXL2Q76L83 1435 aa13.1□□□□□ -0.31
KDM4A-201ENST00000372396 ADGRL2O95490 1459 aa13.1□□□□□ -0.31
KDM4A-201ENST00000372396 WASHC2AQ641Q2 1341 aa13.1□□□□□ -0.31
KDM4A-201ENST00000372396 BRPF3Q9ULD4 1205 aa13.09□□□□□ -0.31
KDM4A-201ENST00000372396 SRPK2P78362 688 aaKnown RBP13.09□□□□□ -0.31
KDM4A-201ENST00000372396 PDIA4P13667 645 aaKnown RBP13.09□□□□□ -0.31
KDM4A-201ENST00000372396 DUOX2Q9NRD8 1548 aa13.08□□□□□ -0.31
KDM4A-201ENST00000372396 NLRP13Q86W25 1043 aa13.08□□□□□ -0.32
KDM4A-201ENST00000372396 CHD1O14646 1710 aa13.08□□□□□ -0.32
KDM4A-201ENST00000372396 ERBINQ96RT1 1412 aa13.08□□□□□ -0.32
KDM4A-201ENST00000372396 PAK3O75914 559 aaPredicted RBP13.07□□□□□ -0.32
KDM4A-201ENST00000372396 STK26Q9P289 416 aa13.07□□□□□ -0.32
KDM4A-201ENST00000372396 MYBBP1AQ9BQG0 1328 aaKnown RBP13.07□□□□□ -0.32
KDM4A-201ENST00000372396 NUDCQ9Y266 331 aa13.07□□□□□ -0.32
KDM4A-201ENST00000372396 UHRF1BP1LA0JNW5 1464 aa13.06□□□□□ -0.32
KDM4A-201ENST00000372396 MORC1Q86VD1 984 aa13.06□□□□□ -0.32
KDM4A-201ENST00000372396 ABCC10Q5T3U5 1492 aa13.05□□□□□ -0.32
KDM4A-201ENST00000372396 GCC2Q8IWJ2 1684 aa13.05□□□□□ -0.32
KDM4A-201ENST00000372396 DHX29Q7Z478 1369 aaKnown RBP13.04□□□□□ -0.32
KDM4A-201ENST00000372396 SAFB2Q14151 953 aaKnown RBP eCLIP13.04□□□□□ -0.32
KDM4A-201ENST00000372396 HDGFL2Q7Z4V5 671 aaPredicted RBP13.04□□□□□ -0.32
KDM4A-201ENST00000372396 TRAK1Q9UPV9 953 aa13.04□□□□□ -0.32
KDM4A-201ENST00000372396 RAPGEF3O95398 923 aa13.04□□□□□ -0.32
KDM4A-201ENST00000372396 RBM10P98175 930 aaKnown RBP13.04□□□□□ -0.32
KDM4A-201ENST00000372396 PANK3Q9H999 370 aa13.04□□□□□ -0.32
KDM4A-201ENST00000372396 DENND4BO75064 1496 aaPredicted RBP13.03□□□□□ -0.32
KDM4A-201ENST00000372396 RTEL1-TNFRSF6BF6WH68 1400 aa13.02□□□□□ -0.32
KDM4A-201ENST00000372396 GSE1Q14687 1217 aa13.02□□□□□ -0.33
KDM4A-201ENST00000372396 NUTM2DQ5VT03 806 aaPredicted RBP13.02□□□□□ -0.33
KDM4A-201ENST00000372396 ARHGEF5Q12774 1597 aa13.01□□□□□ -0.33
KDM4A-201ENST00000372396 EID1Q9Y6B2 187 aa13.01□□□□□ -0.33
KDM4A-201ENST00000372396 RPGRIP1LQ68CZ1 1315 aa13.01□□□□□ -0.33
KDM4A-201ENST00000372396 SLC52A1Q9NWF4 448 aa13.01□□□□□ -0.33
KDM4A-201ENST00000372396 TRAPPC8Q9Y2L5 1435 aa13□□□□□ -0.33
KDM4A-201ENST00000372396 EVC2Q86UK5 1308 aa13□□□□□ -0.33
KDM4A-201ENST00000372396 PNNQ9H307 717 aaKnown RBP13□□□□□ -0.33
KDM4A-201ENST00000372396 TERF2IPQ9NYB0 399 aa13□□□□□ -0.33
KDM4A-201ENST00000372396 ADGBQ8N7X0 1667 aa13□□□□□ -0.33
KDM4A-201ENST00000372396 CENPJQ9HC77 1338 aaPredicted RBP13□□□□□ -0.33
KDM4A-201ENST00000372396 ZNF518AQ6AHZ1 1483 aa13□□□□□ -0.33
KDM4A-201ENST00000372396 TNNT2P45379 298 aaPredicted RBP13□□□□□ -0.33
KDM4A-201ENST00000372396 ABCF1Q8NE71 845 aaKnown RBP eCLIP13□□□□□ -0.33
KDM4A-201ENST00000372396 FAM135AQ9P2D6 1515 aa12.99□□□□□ -0.33
KDM4A-201ENST00000372396 B4GALNT3Q6L9W6 998 aa12.99□□□□□ -0.33
KDM4A-201ENST00000372396 FAM43AQ8N2R8 423 aa12.99□□□□□ -0.33
KDM4A-201ENST00000372396 MAPK8IP3Q9UPT6 1336 aa12.99□□□□□ -0.33
KDM4A-201ENST00000372396 RRP9O43818 475 aaKnown RBP12.99□□□□□ -0.33
KDM4A-201ENST00000372396 NBPF1Q3BBV0 1214 aa12.99□□□□□ -0.33
KDM4A-201ENST00000372396 KDM5BQ9UGL1 1544 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms