RNA–Protein interactions for RNA: ENST00000371419.6

PFDN4-201, Transcript of prefoldin subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PFDN4, Length 1,462 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN4-201ENST00000371419 RNF17Q9BXT8 1623 aaKnown RBP24.04■■□□□ 1.44
PFDN4-201ENST00000371419 RIMS1Q86UR5 1692 aaKnown RBP24.03■■□□□ 1.44
PFDN4-201ENST00000371419 CNTLNQ9NXG0 1405 aa24.01■■□□□ 1.43
PFDN4-201ENST00000371419 PTPRMP28827 1452 aa24.01■■□□□ 1.43
PFDN4-201ENST00000371419 FAM135AQ9P2D6 1515 aa23.98■■□□□ 1.43
PFDN4-201ENST00000371419 NAIPQ13075 1403 aa23.98■■□□□ 1.43
PFDN4-201ENST00000371419 WASHC2CQ9Y4E1 1318 aa23.97■■□□□ 1.43
PFDN4-201ENST00000371419 MROH1Q8NDA8 1641 aa23.97■■□□□ 1.43
PFDN4-201ENST00000371419 HFM1A2PYH4 1435 aa23.97■■□□□ 1.43
PFDN4-201ENST00000371419 DEPDC5O75140 1603 aa23.96■■□□□ 1.43
PFDN4-201ENST00000371419 KDM5DQ9BY66 1539 aa23.96■■□□□ 1.43
PFDN4-201ENST00000371419 CLTCQ00610 1675 aaKnown RBP23.95■■□□□ 1.42
PFDN4-201ENST00000371419 PRDM15P57071 1507 aaPredicted RBP23.95■■□□□ 1.42
PFDN4-201ENST00000371419 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.94■■□□□ 1.422e-6■■□□□ 11.5
PFDN4-201ENST00000371419 GCC2Q8IWJ2 1684 aa23.94■■□□□ 1.42
PFDN4-201ENST00000371419 MROH2AA6NES4 1674 aa23.93■■□□□ 1.42
PFDN4-201ENST00000371419 KANK1Q14678 1352 aa23.93■■□□□ 1.42
PFDN4-201ENST00000371419 PLPPR3Q6T4P5 718 aa23.92■■□□□ 1.42
PFDN4-201ENST00000371419 ZMYM3Q14202 1370 aa23.92■■□□□ 1.42
PFDN4-201ENST00000371419 ABCC3O15438 1527 aa23.91■■□□□ 1.42
PFDN4-201ENST00000371419 ZC3H13Q5T200 1668 aaKnown RBP23.9■■□□□ 1.42
PFDN4-201ENST00000371419 CEBPAP49715 358 aaPredicted RBP23.9■■□□□ 1.42
PFDN4-201ENST00000371419 C3P01024 1663 aa23.88■■□□□ 1.41
PFDN4-201ENST00000371419 UNC13BO14795 1591 aa23.88■■□□□ 1.41
PFDN4-201ENST00000371419 VWDEQ8N2E2 1590 aa23.87■■□□□ 1.41
PFDN4-201ENST00000371419 CEP152O94986 1710 aa23.85■■□□□ 1.41
PFDN4-201ENST00000371419 LMTK2Q8IWU2 1503 aa23.83■■□□□ 1.41
PFDN4-201ENST00000371419 NUP155O75694 1391 aa23.83■■□□□ 1.41
PFDN4-201ENST00000371419 SETD5Q9C0A6 1442 aa23.82■■□□□ 1.4
PFDN4-201ENST00000371419 CAMSAP1Q5T5Y3 1602 aa23.82■■□□□ 1.4
PFDN4-201ENST00000371419 PZPP20742 1482 aa23.81■■□□□ 1.4
PFDN4-201ENST00000371419 NPATQ14207 1427 aa23.81■■□□□ 1.4
PFDN4-201ENST00000371419 TRIM26Q12899 539 aaPredicted RBP23.8■■□□□ 1.4
PFDN4-201ENST00000371419 ARHGAP31Q2M1Z3 1444 aa23.79■■□□□ 1.4
PFDN4-201ENST00000371419 IQGAP3Q86VI3 1631 aa23.79■■□□□ 1.4
PFDN4-201ENST00000371419 FBXO31Q5XUX0 539 aaPredicted RBP23.76■■□□□ 1.39
PFDN4-201ENST00000371419 TRIM52Q96A61 297 aa23.76■■□□□ 1.39
PFDN4-201ENST00000371419 SETD1BQ9UPS6 1966 aaKnown RBP23.76■■□□□ 1.39
PFDN4-201ENST00000371419 EFCAB6Q5THR3 1501 aa23.76■■□□□ 1.39
PFDN4-201ENST00000371419 TET3O43151 1660 aa23.75■■□□□ 1.39
PFDN4-201ENST00000371419 ACIN1Q9UKV3 1341 aaKnown RBP23.75■■□□□ 1.39
PFDN4-201ENST00000371419 RAB3GAP2Q9H2M9 1393 aa23.74■■□□□ 1.39
PFDN4-201ENST00000371419 TNRQ92752 1358 aa23.71■■□□□ 1.39
PFDN4-201ENST00000371419 ERVK-7P63135 1459 aa23.71■■□□□ 1.39
PFDN4-201ENST00000371419 RPRD2Q5VT52 1461 aaKnown RBP23.7■■□□□ 1.38
PFDN4-201ENST00000371419 SPATA31D1Q6ZQQ2 1576 aa23.7■■□□□ 1.38
PFDN4-201ENST00000371419 PREX1Q8TCU6 1659 aa23.7■■□□□ 1.38
PFDN4-201ENST00000371419 UHRF1BP1Q6BDS2 1440 aa23.69■■□□□ 1.38
PFDN4-201ENST00000371419 CFAP65Q6ZU64 1925 aaKnown RBP23.69■■□□□ 1.38
PFDN4-201ENST00000371419 HRCP23327 699 aa23.68■■□□□ 1.38
PFDN4-201ENST00000371419 SLC4A1APQ9BWU0 796 aaKnown RBP23.66■■□□□ 1.38
PFDN4-201ENST00000371419 LMTK3Q96Q04 1460 aa23.66■■□□□ 1.38
PFDN4-201ENST00000371419 E9PCH4 1651 aa23.65■■□□□ 1.38
PFDN4-201ENST00000371419 MYO3AQ8NEV4 1616 aa23.64■■□□□ 1.38
PFDN4-201ENST00000371419 PCGF6Q9BYE7 350 aa23.64■■□□□ 1.38
PFDN4-201ENST00000371419 NOS1P29475 1434 aa23.64■■□□□ 1.37
PFDN4-201ENST00000371419 NLRP1Q9C000 1473 aa23.62■■□□□ 1.37
PFDN4-201ENST00000371419 PKD2Q13563 968 aa23.61■■□□□ 1.37
PFDN4-201ENST00000371419 MPHOSPH9Q99550 1183 aa23.61■■□□□ 1.37
PFDN4-201ENST00000371419 CEP170BQ9Y4F5 1589 aaPredicted RBP23.6■■□□□ 1.37
PFDN4-201ENST00000371419 A2ML1A8K2U0 1454 aa23.59■■□□□ 1.37
PFDN4-201ENST00000371419 ZNF142P52746 1687 aaPredicted RBP23.58■■□□□ 1.37
PFDN4-201ENST00000371419 SYNMO15061 1565 aa23.58■■□□□ 1.37
PFDN4-201ENST00000371419 HSPA2P54652 639 aa23.56■■□□□ 1.36
PFDN4-201ENST00000371419 SLC52A1Q9NWF4 448 aa23.56■■□□□ 1.36
PFDN4-201ENST00000371419 PTPRTO14522 1441 aa23.54■■□□□ 1.36
PFDN4-201ENST00000371419 IDI1Q13907 227 aa23.54■■□□□ 1.36
PFDN4-201ENST00000371419 SPHKAPQ2M3C7 1700 aa23.52■■□□□ 1.36
PFDN4-201ENST00000371419 UGGT1Q9NYU2 1555 aa23.52■■□□□ 1.36
PFDN4-201ENST00000371419 FOXD1Q16676 465 aa23.5■■□□□ 1.35
PFDN4-201ENST00000371419 THEMISQ8N1K5 641 aaPredicted RBP23.5■■□□□ 1.35
PFDN4-201ENST00000371419 PIK3C2BO00750 1634 aa23.49■■□□□ 1.35
PFDN4-201ENST00000371419 TRPM2O94759 1503 aa23.49■■□□□ 1.35
PFDN4-201ENST00000371419 STAG3Q9UJ98 1225 aa23.49■■□□□ 1.35
PFDN4-201ENST00000371419 PLA2R1Q13018 1463 aa23.48■■□□□ 1.35
PFDN4-201ENST00000371419 UBR1Q8IWV7 1749 aa23.47■■□□□ 1.35
PFDN4-201ENST00000371419 ADGRB3O60242 1522 aa23.44■■□□□ 1.34
PFDN4-201ENST00000371419 KDM5AP29375 1690 aaKnown RBP23.44■■□□□ 1.34
PFDN4-201ENST00000371419 CHGAP10645 457 aaKnown RBP23.42■■□□□ 1.34
PFDN4-201ENST00000371419 CLTCL1P53675 1640 aa23.41■■□□□ 1.34
PFDN4-201ENST00000371419 TMEM131LA2VDJ0 1609 aa23.39■■□□□ 1.34
PFDN4-201ENST00000371419 CCDC144AA2RUR9 1427 aa23.39■■□□□ 1.33
PFDN4-201ENST00000371419 ANKLE2Q86XL3 938 aa23.38■■□□□ 1.33
PFDN4-201ENST00000371419 STRCQ7RTU9 1775 aa23.38■■□□□ 1.33
PFDN4-201ENST00000371419 NCKAP5LQ9HCH0 1330 aa23.37■■□□□ 1.33
PFDN4-201ENST00000371419 TMEM2Q9UHN6 1383 aa23.37■■□□□ 1.33
PFDN4-201ENST00000371419 SLIT1O75093 1534 aa23.37■■□□□ 1.33
PFDN4-201ENST00000371419 ANKRD30BQ9BXX2 1392 aa23.36■■□□□ 1.33
PFDN4-201ENST00000371419 ARHGAP23Q9P227 1491 aa23.36■■□□□ 1.33
PFDN4-201ENST00000371419 MYO5BQ9ULV0 1848 aa23.35■■□□□ 1.33
PFDN4-201ENST00000371419 DMRT2Q9Y5R5 561 aa23.34■■□□□ 1.33
PFDN4-201ENST00000371419 EID1Q9Y6B2 187 aa23.34■■□□□ 1.33
PFDN4-201ENST00000371419 KIF1BO60333 1816 aa23.33■■□□□ 1.33
PFDN4-201ENST00000371419 TXNDC2Q86VQ3 553 aa23.32■■□□□ 1.32
PFDN4-201ENST00000371419 POLR1AO95602 1720 aaPredicted RBP23.32■■□□□ 1.32
PFDN4-201ENST00000371419 SCAF11Q99590 1463 aaKnown RBP23.31■■□□□ 1.32
PFDN4-201ENST00000371419 DHX57Q6P158 1386 aaKnown RBP23.31■■□□□ 1.32
PFDN4-201ENST00000371419 LTKP29376 864 aa23.3■■□□□ 1.32
PFDN4-201ENST00000371419 HDGFP51858 240 aaKnown RBP23.3■■□□□ 1.32
PFDN4-201ENST00000371419 ZNF326Q5BKZ1 582 aaKnown RBP23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms