RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 NOP58Q9Y2X3 529 aaKnown RBP23.44■■□□□ 1.34
CLIP2-202ENST00000361545 ELL2O00472 640 aaPredicted RBP23.44■■□□□ 1.34
CLIP2-202ENST00000361545 CGNL1Q0VF96 1302 aa23.43■■□□□ 1.34
CLIP2-202ENST00000361545 GTF2E1P29083 439 aaPredicted RBP23.42■■□□□ 1.34
CLIP2-202ENST00000361545 MYOM3Q5VTT5 1437 aa23.42■■□□□ 1.34
CLIP2-202ENST00000361545 KIF15Q9NS87 1388 aa23.42■■□□□ 1.34
CLIP2-202ENST00000361545 CENPJQ9HC77 1338 aaPredicted RBP23.42■■□□□ 1.34
CLIP2-202ENST00000361545 DNTTIP2Q5QJE6 756 aaKnown RBP23.42■■□□□ 1.34
CLIP2-202ENST00000361545 CFAP44Q96MT7 982 aa23.4■■□□□ 1.34
CLIP2-202ENST00000361545 GNL2Q13823 731 aaKnown RBP23.39■■□□□ 1.33
CLIP2-202ENST00000361545 USP47Q96K76 1375 aa23.39■■□□□ 1.33
CLIP2-202ENST00000361545 PRDM2Q13029 1718 aa23.38■■□□□ 1.33
CLIP2-202ENST00000361545 MYBBP1AQ9BQG0 1328 aaKnown RBP23.38■■□□□ 1.33
CLIP2-202ENST00000361545 HMMRO75330 724 aa23.38■■□□□ 1.33
CLIP2-202ENST00000361545 C1orf141Q5JVX7 400 aa23.38■■□□□ 1.33
CLIP2-202ENST00000361545 TRIM6-TRIM34B2RNG4 842 aa23.37■■□□□ 1.33
CLIP2-202ENST00000361545 PSME1Q06323 249 aa23.37■■□□□ 1.33
CLIP2-202ENST00000361545 AFAP1Q8N556 730 aa23.37■■□□□ 1.33
CLIP2-202ENST00000361545 HDAC5Q9UQL6 1122 aa23.36■■□□□ 1.33
CLIP2-202ENST00000361545 NESP48681 1621 aa23.36■■□□□ 1.33
CLIP2-202ENST00000361545 AEBP2Q6ZN18 517 aaPredicted RBP23.36■■□□□ 1.33
CLIP2-202ENST00000361545 PMFBP1Q8TBY8 1022 aa23.35■■□□□ 1.33
CLIP2-202ENST00000361545 G3V3G9 751 aa23.35■■□□□ 1.33
CLIP2-202ENST00000361545 DCAF8Q5TAQ9 597 aa23.35■■□□□ 1.33
CLIP2-202ENST00000361545 BCL2L13Q9BXK5 485 aa23.34■■□□□ 1.33
CLIP2-202ENST00000361545 PHLDB1Q86UU1 1377 aa23.34■■□□□ 1.33
CLIP2-202ENST00000361545 GRIN2BQ13224 1484 aa23.33■■□□□ 1.33
CLIP2-202ENST00000361545 GPATCH3Q96I76 525 aa23.33■■□□□ 1.32
CLIP2-202ENST00000361545 TEFQ10587 303 aa23.32■■□□□ 1.32
CLIP2-202ENST00000361545 CLSTN1O94985 981 aa23.32■■□□□ 1.32
CLIP2-202ENST00000361545 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.32■■□□□ 1.32
CLIP2-202ENST00000361545 FGD6Q6ZV73 1430 aa23.32■■□□□ 1.32
CLIP2-202ENST00000361545 FRAT2O75474 233 aaPredicted RBP23.3■■□□□ 1.32
CLIP2-202ENST00000361545 PDE3BQ13370 1112 aa23.3■■□□□ 1.32
CLIP2-202ENST00000361545 NGEFQ8N5V2 710 aa23.3■■□□□ 1.32
CLIP2-202ENST00000361545 PRG4Q92954 1404 aaPredicted RBP23.3■■□□□ 1.32
CLIP2-202ENST00000361545 MFAP1P55081 439 aaKnown RBP23.29■■□□□ 1.32
CLIP2-202ENST00000361545 GOLGA6L6A8MZA4 724 aa23.27■■□□□ 1.32
CLIP2-202ENST00000361545 MSH5O43196 834 aa23.27■■□□□ 1.32
CLIP2-202ENST00000361545 SYTL4Q96C24 671 aaPredicted RBP23.27■■□□□ 1.32
CLIP2-202ENST00000361545 TMEM132EQ6IEE7 984 aa23.26■■□□□ 1.31
CLIP2-202ENST00000361545 EIF2S2P20042 333 aaKnown RBP23.25■■□□□ 1.31
CLIP2-202ENST00000361545 PRKRIP1Q9H875 184 aaPredicted RBP23.25■■□□□ 1.31
CLIP2-202ENST00000361545 TTC5Q8N0Z6 440 aa23.25■■□□□ 1.31
CLIP2-202ENST00000361545 ATF3P18847 181 aa23.25■■□□□ 1.31
CLIP2-202ENST00000361545 ANKRD50Q9ULJ7 1429 aa23.24■■□□□ 1.31
CLIP2-202ENST00000361545 DIAPH1O60610 1272 aaKnown RBP23.24■■□□□ 1.31
CLIP2-202ENST00000361545 ARHGAP5Q13017 1502 aa23.24■■□□□ 1.31
CLIP2-202ENST00000361545 MEX3CQ5U5Q3 659 aaKnown RBP23.23■■□□□ 1.31
CLIP2-202ENST00000361545 APAF1O14727 1248 aa23.23■■□□□ 1.31
CLIP2-202ENST00000361545 NUTM2GQ5VZR2 741 aa23.23■■□□□ 1.31
CLIP2-202ENST00000361545 SLKQ9H2G2 1235 aaPredicted RBP23.22■■□□□ 1.31
CLIP2-202ENST00000361545 NECTIN2Q92692 538 aa23.22■■□□□ 1.31
CLIP2-202ENST00000361545 ERICH6BQ5W0A0 696 aa23.21■■□□□ 1.31
CLIP2-202ENST00000361545 CUX1P39880 1505 aa23.21■■□□□ 1.31
CLIP2-202ENST00000361545 TOMM22Q9NS69 142 aa23.21■■□□□ 1.31
CLIP2-202ENST00000361545 MRC2Q9UBG0 1479 aa23.2■■□□□ 1.31
CLIP2-202ENST00000361545 TCERG1O14776 1098 aaKnown RBP23.2■■□□□ 1.3
CLIP2-202ENST00000361545 HSP90B1P14625 803 aaKnown RBP23.2■■□□□ 1.3
CLIP2-202ENST00000361545 NOL8Q76FK4 1167 aaKnown RBP23.2■■□□□ 1.3
CLIP2-202ENST00000361545 NRDCO43847 1150 aa23.2■■□□□ 1.3
CLIP2-202ENST00000361545 CABP2Q9NPB3 220 aa23.19■■□□□ 1.3
CLIP2-202ENST00000361545 NCOA2Q15596 1464 aa23.19■■□□□ 1.3
CLIP2-202ENST00000361545 PLIN1O60240 522 aa23.19■■□□□ 1.3
CLIP2-202ENST00000361545 RTN4Q9NQC3 1192 aaKnown RBP23.19■■□□□ 1.3
CLIP2-202ENST00000361545 CFTRP13569 1480 aa23.19■■□□□ 1.3
CLIP2-202ENST00000361545 LRRC9Q6ZRR7 1453 aa23.19■■□□□ 1.3
CLIP2-202ENST00000361545 KIF21BO75037 1637 aa23.18■■□□□ 1.3
CLIP2-202ENST00000361545 SYNJ2O15056 1496 aa23.18■■□□□ 1.3
CLIP2-202ENST00000361545 RBM19Q9Y4C8 960 aaKnown RBP23.18■■□□□ 1.3
CLIP2-202ENST00000361545 CASKIN1Q8WXD9 1431 aa23.17■■□□□ 1.3
CLIP2-202ENST00000361545 GGNBP2Q9H3C7 697 aa23.17■■□□□ 1.3
CLIP2-202ENST00000361545 E9PSI1 815 aa23.16■■□□□ 1.3
CLIP2-202ENST00000361545 CC2D2AQ9P2K1 1620 aa23.16■■□□□ 1.3
CLIP2-202ENST00000361545 RIPK4P57078 832 aa23.16■■□□□ 1.3
CLIP2-202ENST00000361545 ZKSCAN2Q63HK3 967 aa23.14■■□□□ 1.29
CLIP2-202ENST00000361545 DRC7Q8IY82 874 aa23.14■■□□□ 1.29
CLIP2-202ENST00000361545 TXNDC2Q86VQ3 553 aa23.14■■□□□ 1.29
CLIP2-202ENST00000361545 HMOX1P09601 288 aa23.13■■□□□ 1.29
CLIP2-202ENST00000361545 NEXNQ0ZGT2 675 aa23.13■■□□□ 1.29
CLIP2-202ENST00000361545 FYCO1Q9BQS8 1478 aa23.13■■□□□ 1.29
CLIP2-202ENST00000361545 IFT140Q96RY7 1462 aa23.12■■□□□ 1.29
CLIP2-202ENST00000361545 CFAP70Q5T0N1 1121 aa23.12■■□□□ 1.29
CLIP2-202ENST00000361545 NLRP2Q9NX02 1062 aa23.11■■□□□ 1.29
CLIP2-202ENST00000361545 RILPL2Q969X0 211 aa23.11■■□□□ 1.29
CLIP2-202ENST00000361545 C9orf78Q9NZ63 289 aaPredicted RBP23.11■■□□□ 1.29
CLIP2-202ENST00000361545 NLRP6P59044 892 aa23.11■■□□□ 1.29
CLIP2-202ENST00000361545 ANKRD45Q5TZF3 282 aa23.11■■□□□ 1.29
CLIP2-202ENST00000361545 FOXD4L1Q9NU39 408 aa23.11■■□□□ 1.29
CLIP2-202ENST00000361545 NCBP3Q53F19 620 aaKnown RBP23.1■■□□□ 1.29
CLIP2-202ENST00000361545 RAPGEF4Q8WZA2 1011 aa23.1■■□□□ 1.29
CLIP2-202ENST00000361545 COG6Q9Y2V7 657 aa23.1■■□□□ 1.29
CLIP2-202ENST00000361545 GBP4Q96PP9 640 aa23.09■■□□□ 1.29
CLIP2-202ENST00000361545 STAC3Q96MF2 364 aa23.08■■□□□ 1.29
CLIP2-202ENST00000361545 AMER1Q5JTC6 1135 aaPredicted RBP23.07■■□□□ 1.28
CLIP2-202ENST00000361545 GZF1Q9H116 711 aaPredicted RBP23.07■■□□□ 1.28
CLIP2-202ENST00000361545 RAPGEF3O95398 923 aa23.07■■□□□ 1.28
CLIP2-202ENST00000361545 TOPBP1Q92547 1522 aa23.06■■□□□ 1.28
CLIP2-202ENST00000361545 SNAPC4Q5SXM2 1469 aa23.06■■□□□ 1.28
CLIP2-202ENST00000361545 SYNJ1O43426 1573 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms