RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 SF3A1Q15459 793 aaKnown RBP11.96□□□□□ -0.5
CUX1-203ENST00000360264 H3BQV1 296 aa11.96□□□□□ -0.5
CUX1-203ENST00000360264 IFFO2Q5TF58 517 aa11.96□□□□□ -0.5
CUX1-203ENST00000360264 APBB1O00213 710 aa11.95□□□□□ -0.5
CUX1-203ENST00000360264 SMC4Q9NTJ3 1288 aa11.95□□□□□ -0.5
CUX1-203ENST00000360264 SYNE3Q6ZMZ3 975 aa11.95□□□□□ -0.5
CUX1-203ENST00000360264 GOLGA6L3A6NEY3 463 aa11.95□□□□□ -0.5
CUX1-203ENST00000360264 NLRP13Q86W25 1043 aa11.94□□□□□ -0.5
CUX1-203ENST00000360264 AMPHP49418 695 aa11.94□□□□□ -0.5
CUX1-203ENST00000360264 TOMM22Q9NS69 142 aa11.94□□□□□ -0.5
CUX1-203ENST00000360264 KRI1Q8N9T8 703 aaKnown RBP11.94□□□□□ -0.5
CUX1-203ENST00000360264 TRIM34Q9BYJ4 488 aa11.93□□□□□ -0.5
CUX1-203ENST00000360264 SMARCA2P51531 1590 aa11.93□□□□□ -0.5
CUX1-203ENST00000360264 CREBRFQ8IUR6 639 aa11.93□□□□□ -0.5
CUX1-203ENST00000360264 HSPA5P11021 654 aaKnown RBP11.93□□□□□ -0.5
CUX1-203ENST00000360264 WWC1Q8IX03 1113 aa11.92□□□□□ -0.5
CUX1-203ENST00000360264 ANKRD20A12PQ8NF67 263 aa11.92□□□□□ -0.5
CUX1-203ENST00000360264 HOOK1Q9UJC3 728 aaKnown RBP11.92□□□□□ -0.5
CUX1-203ENST00000360264 TPD52L1Q16890 204 aaPredicted RBP11.92□□□□□ -0.5
CUX1-203ENST00000360264 C1orf141Q5JVX7 400 aa11.92□□□□□ -0.5
CUX1-203ENST00000360264 CENPJQ9HC77 1338 aaPredicted RBP11.92□□□□□ -0.5
CUX1-203ENST00000360264 CTDP1Q9Y5B0 961 aaPredicted RBP11.92□□□□□ -0.5
CUX1-203ENST00000360264 IPO7O95373 1038 aaKnown RBP11.92□□□□□ -0.5
CUX1-203ENST00000360264 CPLX2Q6PUV4 134 aaKnown RBP11.92□□□□□ -0.5
CUX1-203ENST00000360264 CCDC47Q96A33 483 aaKnown RBP11.92□□□□□ -0.5
CUX1-203ENST00000360264 RUFY2Q8WXA3 655 aa11.92□□□□□ -0.5
CUX1-203ENST00000360264 SENP3-EIF4A1A0A087X0R7 540 aa11.91□□□□□ -0.5
CUX1-203ENST00000360264 CGNL1Q0VF96 1302 aa11.91□□□□□ -0.5
CUX1-203ENST00000360264 NGDNQ8NEJ9 315 aaKnown RBP11.91□□□□□ -0.5
CUX1-203ENST00000360264 GPS2Q13227 327 aa11.91□□□□□ -0.5
CUX1-203ENST00000360264 FAM184AQ8NB25 1140 aa11.91□□□□□ -0.5
CUX1-203ENST00000360264 DEKP35659 375 aaKnown RBP11.91□□□□□ -0.5
CUX1-203ENST00000360264 WASHC2AQ641Q2 1341 aa11.9□□□□□ -0.5
CUX1-203ENST00000360264 ROCK1Q13464 1354 aa11.9□□□□□ -0.5
CUX1-203ENST00000360264 SLKQ9H2G2 1235 aaPredicted RBP11.9□□□□□ -0.5
CUX1-203ENST00000360264 CCDC18Q5T9S5 1454 aa11.9□□□□□ -0.5
CUX1-203ENST00000360264 WASHC2CQ9Y4E1 1318 aa11.9□□□□□ -0.5
CUX1-203ENST00000360264 MFAP1P55081 439 aaKnown RBP11.9□□□□□ -0.5
CUX1-203ENST00000360264 NUP155O75694 1391 aa11.9□□□□□ -0.5
CUX1-203ENST00000360264 GOLGA6L19H0YKK7 550 aa11.9□□□□□ -0.51
CUX1-203ENST00000360264 COG3Q96JB2 828 aa11.89□□□□□ -0.51
CUX1-203ENST00000360264 RTN4Q9NQC3 1192 aaKnown RBP11.88□□□□□ -0.51
CUX1-203ENST00000360264 VPS8Q8N3P4 1428 aa11.88□□□□□ -0.51
CUX1-203ENST00000360264 MPHOSPH9Q99550 1183 aa11.88□□□□□ -0.51
CUX1-203ENST00000360264 KIF15Q9NS87 1388 aa11.88□□□□□ -0.51
CUX1-203ENST00000360264 NEXNQ0ZGT2 675 aa11.88□□□□□ -0.51
CUX1-203ENST00000360264 SKOR2Q2VWA4 1001 aaPredicted RBP11.88□□□□□ -0.51
CUX1-203ENST00000360264 SLC4A10Q6U841 1118 aa11.87□□□□□ -0.51
CUX1-203ENST00000360264 BECN2A8MW95 431 aa11.87□□□□□ -0.51
CUX1-203ENST00000360264 PES1O00541 588 aaKnown RBP11.87□□□□□ -0.51
CUX1-203ENST00000360264 RNF20Q5VTR2 975 aa11.86□□□□□ -0.51
CUX1-203ENST00000360264 EVA1CP58658 441 aa11.86□□□□□ -0.51
CUX1-203ENST00000360264 DIAPH3Q9NSV4 1193 aa11.86□□□□□ -0.51
CUX1-203ENST00000360264 ZKSCAN1P17029 563 aaPredicted RBP11.86□□□□□ -0.51
CUX1-203ENST00000360264 RDXP35241 583 aaKnown RBP11.86□□□□□ -0.51
CUX1-203ENST00000360264 TRIM29Q14134 588 aa11.86□□□□□ -0.51
CUX1-203ENST00000360264 TTC5Q8N0Z6 440 aa11.85□□□□□ -0.51
CUX1-203ENST00000360264 CDR1P51861 262 aa11.85□□□□□ -0.51
CUX1-203ENST00000360264 CNKSR2Q8WXI2 1034 aa11.85□□□□□ -0.51
CUX1-203ENST00000360264 TEX35Q5T0J7 233 aa11.85□□□□□ -0.51
CUX1-203ENST00000360264 VPS37DQ86XT2 251 aa11.84□□□□□ -0.51
CUX1-203ENST00000360264 CPLX1O14810 134 aa11.83□□□□□ -0.52
CUX1-203ENST00000360264 NGEFQ8N5V2 710 aa11.83□□□□□ -0.52
CUX1-203ENST00000360264 EVC2Q86UK5 1308 aa11.83□□□□□ -0.52
CUX1-203ENST00000360264 TRDNQ13061 729 aa11.83□□□□□ -0.52
CUX1-203ENST00000360264 KIF3BO15066 747 aa11.83□□□□□ -0.52
CUX1-203ENST00000360264 REC8O95072 547 aa11.83□□□□□ -0.52
CUX1-203ENST00000360264 PDE4CQ08493 712 aa11.82□□□□□ -0.52
CUX1-203ENST00000360264 GZF1Q9H116 711 aaPredicted RBP11.82□□□□□ -0.52
CUX1-203ENST00000360264 VGFO15240 615 aaPredicted RBP11.82□□□□□ -0.52
CUX1-203ENST00000360264 CCDC43Q96MW1 224 aaKnown RBP11.82□□□□□ -0.52
CUX1-203ENST00000360264 ZKSCAN2Q63HK3 967 aa11.81□□□□□ -0.52
CUX1-203ENST00000360264 ACBD3Q9H3P7 528 aa11.81□□□□□ -0.52
CUX1-203ENST00000360264 MCTP1Q6DN14 999 aa11.81□□□□□ -0.52
CUX1-203ENST00000360264 RRP12Q5JTH9 1297 aaKnown RBP11.81□□□□□ -0.52
CUX1-203ENST00000360264 ERICH2A1L162 156 aa11.81□□□□□ -0.52
CUX1-203ENST00000360264 CCDC144AA2RUR9 1427 aa11.81□□□□□ -0.52
CUX1-203ENST00000360264 CWC22Q9HCG8 908 aaKnown RBP11.8□□□□□ -0.52
CUX1-203ENST00000360264 MEX3CQ5U5Q3 659 aaKnown RBP11.8□□□□□ -0.52
CUX1-203ENST00000360264 IPO9Q96P70 1041 aaKnown RBP11.8□□□□□ -0.52
CUX1-203ENST00000360264 R3HCC1Q9Y3T6 440 aaKnown RBP11.8□□□□□ -0.52
CUX1-203ENST00000360264 DCAF8L1A6NGE4 600 aa11.8□□□□□ -0.52
CUX1-203ENST00000360264 HSP90AB4PQ58FF6 505 aa11.8□□□□□ -0.52
CUX1-203ENST00000360264 SOGA1O94964 1423 aa11.8□□□□□ -0.52
CUX1-203ENST00000360264 DDX58O95786 925 aaKnown RBP11.79□□□□□ -0.52
CUX1-203ENST00000360264 SAFBQ15424 915 aaKnown RBP eCLIP11.79□□□□□ -0.52
CUX1-203ENST00000360264 C9orf78Q9NZ63 289 aaPredicted RBP11.79□□□□□ -0.52
CUX1-203ENST00000360264 MYO6Q9UM54 1294 aa11.79□□□□□ -0.52
CUX1-203ENST00000360264 AK7Q96M32 723 aa11.79□□□□□ -0.52
CUX1-203ENST00000360264 RBM19Q9Y4C8 960 aaKnown RBP11.79□□□□□ -0.52
CUX1-203ENST00000360264 RAB3GAP2Q9H2M9 1393 aa11.79□□□□□ -0.52
CUX1-203ENST00000360264 CENPQQ7L2Z9 268 aaPredicted RBP11.79□□□□□ -0.52
CUX1-203ENST00000360264 LTV1Q96GA3 475 aaPredicted RBP11.79□□□□□ -0.52
CUX1-203ENST00000360264 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.78□□□□□ -0.523e-6■□□□□ 10.3
CUX1-203ENST00000360264 BRMS1Q9HCU9 246 aa11.78□□□□□ -0.52
CUX1-203ENST00000360264 E9PSI1 815 aa11.78□□□□□ -0.52
CUX1-203ENST00000360264 EPS15P42566 896 aa11.78□□□□□ -0.52
CUX1-203ENST00000360264 TEFQ10587 303 aa11.78□□□□□ -0.52
CUX1-203ENST00000360264 AEBP2Q6ZN18 517 aaPredicted RBP11.78□□□□□ -0.52
CUX1-203ENST00000360264 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms