RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 BRD4O60885 1362 aaPredicted RBP8.09□□□□□ -1.11
VPS13B-202ENST00000357162 HOOK1Q9UJC3 728 aaKnown RBP8.09□□□□□ -1.12
VPS13B-202ENST00000357162 FBLN2P98095 1184 aa8.08□□□□□ -1.12
VPS13B-202ENST00000357162 CCDC144AA2RUR9 1427 aa8.08□□□□□ -1.12
VPS13B-202ENST00000357162 CHMP7Q8WUX9 453 aaPredicted RBP8.08□□□□□ -1.12
VPS13B-202ENST00000357162 CHIC2Q9UKJ5 165 aa8.08□□□□□ -1.12
VPS13B-202ENST00000357162 KIF2AO00139 706 aaPredicted RBP8.08□□□□□ -1.12
VPS13B-202ENST00000357162 IPO7O95373 1038 aaKnown RBP8.08□□□□□ -1.12
VPS13B-202ENST00000357162 DCTN1Q14203 1278 aa8.07□□□□□ -1.12
VPS13B-202ENST00000357162 MCM5P33992 734 aa8.07□□□□□ -1.12
VPS13B-202ENST00000357162 ERCC4Q92889 916 aaPredicted RBP8.07□□□□□ -1.12
VPS13B-202ENST00000357162 PDCP20941 246 aa8.06□□□□□ -1.12
VPS13B-202ENST00000357162 USP8P40818 1118 aa8.06□□□□□ -1.12
VPS13B-202ENST00000357162 KNL1Q8NG31 2342 aa8.06□□□□□ -1.12
VPS13B-202ENST00000357162 OS9Q13438 667 aaPredicted RBP8.06□□□□□ -1.12
VPS13B-202ENST00000357162 TERF2IPQ9NYB0 399 aa8.06□□□□□ -1.12
VPS13B-202ENST00000357162 ANKRD20A12PQ8NF67 263 aa8.06□□□□□ -1.12
VPS13B-202ENST00000357162 NAT10Q9H0A0 1025 aaKnown RBP8.06□□□□□ -1.12
VPS13B-202ENST00000357162 RAPGEF2Q9Y4G8 1499 aa8.06□□□□□ -1.12
VPS13B-202ENST00000357162 TSR1Q2NL82 804 aaKnown RBP8.06□□□□□ -1.12
VPS13B-202ENST00000357162 HSP90B2PQ58FF3 399 aa8.06□□□□□ -1.12
VPS13B-202ENST00000357162 NOC3LQ8WTT2 800 aaKnown RBP8.06□□□□□ -1.12
VPS13B-202ENST00000357162 AKNAQ7Z591 1439 aa8.06□□□□□ -1.12
VPS13B-202ENST00000357162 SPAG9O60271 1321 aaKnown RBP8.06□□□□□ -1.12
VPS13B-202ENST00000357162 CCDC7Q96M83 1385 aa8.05□□□□□ -1.12
VPS13B-202ENST00000357162 CAGE1Q8TC20 777 aa8.05□□□□□ -1.12
VPS13B-202ENST00000357162 ZNF428Q96B54 188 aa8.05□□□□□ -1.12
VPS13B-202ENST00000357162 DDX19BQ9UMR2 479 aa8.05□□□□□ -1.12
VPS13B-202ENST00000357162 PDE4AP27815 886 aa8.05□□□□□ -1.12
VPS13B-202ENST00000357162 GNL2Q13823 731 aaKnown RBP8.05□□□□□ -1.12
VPS13B-202ENST00000357162 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.05□□□□□ -1.12
VPS13B-202ENST00000357162 FRAT1Q92837 279 aaPredicted RBP8.05□□□□□ -1.12
VPS13B-202ENST00000357162 KDM2AQ9Y2K7 1162 aa8.05□□□□□ -1.12
VPS13B-202ENST00000357162 RUFY2Q8WXA3 655 aa8.05□□□□□ -1.12
VPS13B-202ENST00000357162 HSPA5P11021 654 aaKnown RBP8.05□□□□□ -1.12
VPS13B-202ENST00000357162 RRP1P56182 461 aaKnown RBP8.05□□□□□ -1.12
VPS13B-202ENST00000357162 MORC1Q86VD1 984 aa8.04□□□□□ -1.12
VPS13B-202ENST00000357162 RNF20Q5VTR2 975 aa8.04□□□□□ -1.12
VPS13B-202ENST00000357162 FAM107BQ9H098 131 aa8.04□□□□□ -1.12
VPS13B-202ENST00000357162 PDE4DIPQ5VU43 2346 aa8.04□□□□□ -1.12
VPS13B-202ENST00000357162 CAVIN2O95810 425 aa8.04□□□□□ -1.12
VPS13B-202ENST00000357162 DHX57Q6P158 1386 aaKnown RBP8.04□□□□□ -1.12
VPS13B-202ENST00000357162 GOLGA6L19H0YKK7 550 aa8.04□□□□□ -1.12
VPS13B-202ENST00000357162 PLCB2Q00722 1185 aa8.04□□□□□ -1.12
VPS13B-202ENST00000357162 CCDC173Q0VFZ6 552 aa8.04□□□□□ -1.12
VPS13B-202ENST00000357162 SALL2Q9Y467 1007 aaPredicted RBP8.04□□□□□ -1.12
VPS13B-202ENST00000357162 SLKQ9H2G2 1235 aaPredicted RBP8.03□□□□□ -1.12
VPS13B-202ENST00000357162 TXLNBQ8N3L3 684 aa8.03□□□□□ -1.12
VPS13B-202ENST00000357162 STK31Q9BXU1 1019 aa8.03□□□□□ -1.12
VPS13B-202ENST00000357162 MYO6Q9UM54 1294 aa8.03□□□□□ -1.12
VPS13B-202ENST00000357162 AK7Q96M32 723 aa8.03□□□□□ -1.12
VPS13B-202ENST00000357162 HDGFL2Q7Z4V5 671 aaPredicted RBP8.02□□□□□ -1.12
VPS13B-202ENST00000357162 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.02□□□□□ -1.122e-6■■□□□ 14.1
VPS13B-202ENST00000357162 RTN4Q9NQC3 1192 aaKnown RBP8.02□□□□□ -1.13
VPS13B-202ENST00000357162 CUX2O14529 1486 aa8.02□□□□□ -1.13
VPS13B-202ENST00000357162 DHX29Q7Z478 1369 aaKnown RBP8.02□□□□□ -1.13
VPS13B-202ENST00000357162 CHGAP10645 457 aaKnown RBP8.02□□□□□ -1.13
VPS13B-202ENST00000357162 PRKRIP1Q9H875 184 aaPredicted RBP8.02□□□□□ -1.13
VPS13B-202ENST00000357162 CWC22Q9HCG8 908 aaKnown RBP8.01□□□□□ -1.13
VPS13B-202ENST00000357162 ZKSCAN2Q63HK3 967 aa8.01□□□□□ -1.13
VPS13B-202ENST00000357162 NASPP49321 788 aaPredicted RBP8.01□□□□□ -1.13
VPS13B-202ENST00000357162 DDX49Q9Y6V7 483 aaKnown RBP8.01□□□□□ -1.13
VPS13B-202ENST00000357162 EFCAB5A4FU69 1503 aa8.01□□□□□ -1.13
VPS13B-202ENST00000357162 USP47Q96K76 1375 aa8.01□□□□□ -1.13
VPS13B-202ENST00000357162 BECN2A8MW95 431 aa8.01□□□□□ -1.13
VPS13B-202ENST00000357162 ZKSCAN1P17029 563 aaPredicted RBP8□□□□□ -1.13
VPS13B-202ENST00000357162 PIP4K2AP48426 406 aaPredicted RBP8□□□□□ -1.13
VPS13B-202ENST00000357162 MYOM3Q5VTT5 1437 aa8□□□□□ -1.13
VPS13B-202ENST00000357162 RDXP35241 583 aaKnown RBP8□□□□□ -1.13
VPS13B-202ENST00000357162 SMARCA4P51532 1647 aa8□□□□□ -1.13
VPS13B-202ENST00000357162 PDE3AQ14432 1141 aa8□□□□□ -1.13
VPS13B-202ENST00000357162 RABEP1Q15276 862 aa8□□□□□ -1.13
VPS13B-202ENST00000357162 CPLX2Q6PUV4 134 aaKnown RBP8□□□□□ -1.13
VPS13B-202ENST00000357162 HSP90AB4PQ58FF6 505 aa8□□□□□ -1.13
VPS13B-202ENST00000357162 CCDC88BA6NC98 1476 aa8□□□□□ -1.13
VPS13B-202ENST00000357162 ITPRIPQ8IWB1 547 aa8□□□□□ -1.13
VPS13B-202ENST00000357162 RTF1Q92541 710 aaKnown RBP8□□□□□ -1.13
VPS13B-202ENST00000357162 MAP3K1Q13233 1512 aa7.99□□□□□ -1.13
VPS13B-202ENST00000357162 VSIG10Q8N0Z9 540 aa7.99□□□□□ -1.13
VPS13B-202ENST00000357162 POGKQ9P215 609 aa7.99□□□□□ -1.13
VPS13B-202ENST00000357162 MPHOSPH9Q99550 1183 aa7.99□□□□□ -1.13
VPS13B-202ENST00000357162 TUBB4BP68371 445 aa7.99□□□□□ -1.13
VPS13B-202ENST00000357162 PDS5BQ9NTI5 1447 aa7.99□□□□□ -1.13
VPS13B-202ENST00000357162 IQCEQ6IPM2 695 aa7.98□□□□□ -1.13
VPS13B-202ENST00000357162 TUBB4AP04350 444 aa7.98□□□□□ -1.13
VPS13B-202ENST00000357162 CCDC191Q8NCU4 936 aa7.98□□□□□ -1.13
VPS13B-202ENST00000357162 FYCO1Q9BQS8 1478 aa7.98□□□□□ -1.13
VPS13B-202ENST00000357162 GOLGA6L7A0A1B0GV03 622 aa7.98□□□□□ -1.13
VPS13B-202ENST00000357162 INCENPQ9NQS7 918 aa7.98□□□□□ -1.13
VPS13B-202ENST00000357162 PLPPR3Q6T4P5 718 aa7.98□□□□□ -1.13
VPS13B-202ENST00000357162 API5Q9BZZ5 524 aaKnown RBP7.98□□□□□ -1.13
VPS13B-202ENST00000357162 DCAF11Q8TEB1 546 aa7.97□□□□□ -1.13
VPS13B-202ENST00000357162 RRBP1Q9P2E9 1410 aaKnown RBP7.97□□□□□ -1.13
VPS13B-202ENST00000357162 PLEKHH1Q9ULM0 1364 aa7.97□□□□□ -1.13
VPS13B-202ENST00000357162 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.97□□□□□ -1.13
VPS13B-202ENST00000357162 POLA1P09884 1462 aaPredicted RBP7.97□□□□□ -1.13
VPS13B-202ENST00000357162 SOGA1O94964 1423 aa7.97□□□□□ -1.13
VPS13B-202ENST00000357162 ZNF771Q7L3S4 317 aaPredicted RBP7.97□□□□□ -1.13
VPS13B-202ENST00000357162 NUP155O75694 1391 aa7.97□□□□□ -1.13
VPS13B-202ENST00000357162 INTS3Q68E01 1043 aaKnown RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms