RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ABCC3O15438 1527 aa8.53□□□□□ -1.04
CSDE1-202ENST00000339438 LTBP4Q8N2S1 1624 aa8.53□□□□□ -1.04
CSDE1-202ENST00000339438 PRAG1Q86YV5 1406 aa8.52□□□□□ -1.05
CSDE1-202ENST00000339438 KDM4FA0A1W2PPD8 638 aa8.52□□□□□ -1.05
CSDE1-202ENST00000339438 CHD2O14647 1828 aaKnown RBP8.51□□□□□ -1.05
CSDE1-202ENST00000339438 KNDC1Q76NI1 1749 aa8.51□□□□□ -1.05
CSDE1-202ENST00000339438 CRYBG1Q9Y4K1 1723 aa8.51□□□□□ -1.05
CSDE1-202ENST00000339438 ANP32EQ9BTT0 268 aa8.5□□□□□ -1.05
CSDE1-202ENST00000339438 XRN1Q8IZH2 1706 aaKnown RBP8.49□□□□□ -1.05
CSDE1-202ENST00000339438 ABCC5O15440 1437 aa8.49□□□□□ -1.05
CSDE1-202ENST00000339438 ATP10AO60312 1499 aa8.49□□□□□ -1.05
CSDE1-202ENST00000339438 C9orf84Q5VXU9 1444 aa8.49□□□□□ -1.05
CSDE1-202ENST00000339438 SLIT1O75093 1534 aa8.49□□□□□ -1.05
CSDE1-202ENST00000339438 MYOM3Q5VTT5 1437 aa8.48□□□□□ -1.05
CSDE1-202ENST00000339438 MARF1Q9Y4F3 1742 aaKnown RBP8.48□□□□□ -1.05
CSDE1-202ENST00000339438 ARHGAP31Q2M1Z3 1444 aa8.48□□□□□ -1.05
CSDE1-202ENST00000339438 DUOX2Q9NRD8 1548 aa8.47□□□□□ -1.05
CSDE1-202ENST00000339438 ARHGAP23Q9P227 1491 aa8.47□□□□□ -1.05
CSDE1-202ENST00000339438 PTPRMP28827 1452 aa8.47□□□□□ -1.05
CSDE1-202ENST00000339438 MED14O60244 1454 aa8.47□□□□□ -1.05
CSDE1-202ENST00000339438 PLEKHH2Q8IVE3 1493 aa8.46□□□□□ -1.05
CSDE1-202ENST00000339438 IQGAP1P46940 1657 aa8.46□□□□□ -1.05
CSDE1-202ENST00000339438 CCDC141Q6ZP82 1450 aa8.46□□□□□ -1.06
CSDE1-202ENST00000339438 ARHGAP5Q13017 1502 aa8.46□□□□□ -1.06
CSDE1-202ENST00000339438 ERBINQ96RT1 1412 aa8.45□□□□□ -1.06
CSDE1-202ENST00000339438 CLTCL1P53675 1640 aa8.45□□□□□ -1.06
CSDE1-202ENST00000339438 DAPK1P53355 1430 aa8.44□□□□□ -1.06
CSDE1-202ENST00000339438 USP54Q70EL1 1684 aa8.44□□□□□ -1.06
CSDE1-202ENST00000339438 FGD6Q6ZV73 1430 aa8.44□□□□□ -1.06
CSDE1-202ENST00000339438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.43□□□□□ -1.06
CSDE1-202ENST00000339438 PZPP20742 1482 aa8.42□□□□□ -1.06
CSDE1-202ENST00000339438 NRXN1Q9ULB1 1477 aa8.42□□□□□ -1.06
CSDE1-202ENST00000339438 NPATQ14207 1427 aa8.42□□□□□ -1.06
CSDE1-202ENST00000339438 NOS1P29475 1434 aa8.42□□□□□ -1.06
CSDE1-202ENST00000339438 ADGRB3O60242 1522 aa8.42□□□□□ -1.06
CSDE1-202ENST00000339438 TSHZ2Q9NRE2 1034 aa8.42□□□□□ -1.06
CSDE1-202ENST00000339438 KIAA1210Q9ULL0 1709 aa8.41□□□□□ -1.06
CSDE1-202ENST00000339438 SETD1BQ9UPS6 1966 aaKnown RBP8.41□□□□□ -1.06
CSDE1-202ENST00000339438 PTPRTO14522 1441 aa8.41□□□□□ -1.06
CSDE1-202ENST00000339438 ROCK1Q13464 1354 aa8.41□□□□□ -1.06
CSDE1-202ENST00000339438 PLA2R1Q13018 1463 aa8.41□□□□□ -1.06
CSDE1-202ENST00000339438 FBLN2P98095 1184 aa8.4□□□□□ -1.06
CSDE1-202ENST00000339438 TRPM2O94759 1503 aa8.4□□□□□ -1.07
CSDE1-202ENST00000339438 SETBP1Q9Y6X0 1596 aa8.4□□□□□ -1.07
CSDE1-202ENST00000339438 NCOA1Q15788 1441 aa8.4□□□□□ -1.07
CSDE1-202ENST00000339438 KANK4Q5T7N3 995 aaPredicted RBP8.39□□□□□ -1.07
CSDE1-202ENST00000339438 NEXMIFQ5QGS0 1516 aa8.39□□□□□ -1.07
CSDE1-202ENST00000339438 TOPAZ1Q8N9V7 1692 aa8.38□□□□□ -1.07
CSDE1-202ENST00000339438 A2MP01023 1474 aa8.38□□□□□ -1.07
CSDE1-202ENST00000339438 RPRD2Q5VT52 1461 aaKnown RBP8.37□□□□□ -1.07
CSDE1-202ENST00000339438 SCAPERQ9BY12 1400 aa8.37□□□□□ -1.07
CSDE1-202ENST00000339438 ASXL1Q8IXJ9 1541 aa8.37□□□□□ -1.07
CSDE1-202ENST00000339438 SUPT16HQ9Y5B9 1047 aaKnown RBP8.37□□□□□ -1.07
CSDE1-202ENST00000339438 ZFYVE9O95405 1425 aa8.36□□□□□ -1.07
CSDE1-202ENST00000339438 MIER1Q8N108 512 aa8.36□□□□□ -1.07
CSDE1-202ENST00000339438 ABCA3Q99758 1704 aa8.36□□□□□ -1.07
CSDE1-202ENST00000339438 KIF1BO60333 1816 aa8.35□□□□□ -1.07
CSDE1-202ENST00000339438 NALCNQ8IZF0 1738 aa8.35□□□□□ -1.07
CSDE1-202ENST00000339438 ZNF316A6NFI3 1004 aaPredicted RBP8.34□□□□□ -1.07
CSDE1-202ENST00000339438 ERVK-7P63135 1459 aa8.34□□□□□ -1.07
CSDE1-202ENST00000339438 IQSEC2Q5JU85 1478 aa8.34□□□□□ -1.07
CSDE1-202ENST00000339438 CCER1Q8TC90 406 aaPredicted RBP8.33□□□□□ -1.08
CSDE1-202ENST00000339438 USP32Q8NFA0 1604 aa8.33□□□□□ -1.08
CSDE1-202ENST00000339438 FAM69CQ0P6D2 419 aa8.33□□□□□ -1.08
CSDE1-202ENST00000339438 DIP2AQ14689 1571 aa8.33□□□□□ -1.08
CSDE1-202ENST00000339438 APLP2Q06481 763 aa8.32□□□□□ -1.08
CSDE1-202ENST00000339438 YTHDC1Q96MU7 727 aaKnown RBP8.32□□□□□ -1.08
CSDE1-202ENST00000339438 DHX29Q7Z478 1369 aaKnown RBP8.32□□□□□ -1.08
CSDE1-202ENST00000339438 NHSL1Q5SYE7 1610 aa8.32□□□□□ -1.08
CSDE1-202ENST00000339438 NAIPQ13075 1403 aa8.32□□□□□ -1.08
CSDE1-202ENST00000339438 HFM1A2PYH4 1435 aa8.31□□□□□ -1.08
CSDE1-202ENST00000339438 ARHGEF28Q8N1W1 1705 aaKnown RBP8.3□□□□□ -1.08
CSDE1-202ENST00000339438 ADGRB2O60241 1585 aa8.3□□□□□ -1.08
CSDE1-202ENST00000339438 CLSPNQ9HAW4 1339 aa8.29□□□□□ -1.08
CSDE1-202ENST00000339438 TRPM3Q9HCF6 1732 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-202ENST00000339438 COL22A1Q8NFW1 1626 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-202ENST00000339438 ADGRB1O14514 1584 aa8.28□□□□□ -1.08
CSDE1-202ENST00000339438 NRKQ7Z2Y5 1582 aa8.28□□□□□ -1.08
CSDE1-202ENST00000339438 ZNF644Q9H582 1327 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-202ENST00000339438 A2ML1A8K2U0 1454 aa8.27□□□□□ -1.09
CSDE1-202ENST00000339438 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.27□□□□□ -1.09
CSDE1-202ENST00000339438 TRPM1Q7Z4N2 1603 aa8.27□□□□□ -1.09
CSDE1-202ENST00000339438 CPS1P31327 1500 aa8.26□□□□□ -1.09
CSDE1-202ENST00000339438 CNTLNQ9NXG0 1405 aa8.25□□□□□ -1.09
CSDE1-202ENST00000339438 WNK3Q9BYP7 1800 aa8.25□□□□□ -1.09
CSDE1-202ENST00000339438 NLRP1Q9C000 1473 aa8.24□□□□□ -1.09
CSDE1-202ENST00000339438 SPATA31E1Q6ZUB1 1445 aa8.24□□□□□ -1.09
CSDE1-202ENST00000339438 FMN2Q9NZ56 1722 aa8.23□□□□□ -1.09
CSDE1-202ENST00000339438 RGPD8O14715 1765 aaPredicted RBP8.23□□□□□ -1.09
CSDE1-202ENST00000339438 ANKRD26Q9UPS8 1709 aa8.23□□□□□ -1.09
CSDE1-202ENST00000339438 RANGAP1P46060 587 aaPredicted RBP8.22□□□□□ -1.09
CSDE1-202ENST00000339438 MYOM1P52179 1685 aa8.22□□□□□ -1.09
CSDE1-202ENST00000339438 SHPRHQ149N8 1683 aa8.22□□□□□ -1.09
CSDE1-202ENST00000339438 AKAP12Q02952 1782 aa8.22□□□□□ -1.09
CSDE1-202ENST00000339438 RAPGEF3O95398 923 aa8.21□□□□□ -1.1
CSDE1-202ENST00000339438 ALS2Q96Q42 1657 aa8.21□□□□□ -1.1
CSDE1-202ENST00000339438 MSH5O43196 834 aa8.21□□□□□ -1.1
CSDE1-202ENST00000339438 P3H3Q8IVL6 736 aa8.19□□□□□ -1.1
CSDE1-202ENST00000339438 PHRF1Q9P1Y6 1649 aaKnown RBP8.19□□□□□ -1.1
CSDE1-202ENST00000339438 ERICH6Q7L0X2 663 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms