RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 ADGRL1O94910 1474 aa18.53■□□□□ 0.56
CPNE1-201ENST00000317677 KDM4FA0A1W2PPD8 638 aa18.52■□□□□ 0.56
CPNE1-201ENST00000317677 L3MBTL2Q969R5 705 aa18.52■□□□□ 0.56
CPNE1-201ENST00000317677 MAGI2Q86UL8 1455 aa18.52■□□□□ 0.56
CPNE1-201ENST00000317677 IQGAP3Q86VI3 1631 aa18.52■□□□□ 0.56
CPNE1-201ENST00000317677 RTEL1-TNFRSF6BF6WH68 1400 aa18.52■□□□□ 0.56
CPNE1-201ENST00000317677 ERBINQ96RT1 1412 aa18.51■□□□□ 0.55
CPNE1-201ENST00000317677 SCAPERQ9BY12 1400 aa18.51■□□□□ 0.55
CPNE1-201ENST00000317677 TSHZ2Q9NRE2 1034 aa18.5■□□□□ 0.55
CPNE1-201ENST00000317677 ATP7AQ04656 1500 aa18.5■□□□□ 0.55
CPNE1-201ENST00000317677 SPAG9O60271 1321 aaKnown RBP18.49■□□□□ 0.55
CPNE1-201ENST00000317677 YTHDC1Q96MU7 727 aaKnown RBP18.48■□□□□ 0.55
CPNE1-201ENST00000317677 RAPGEF3O95398 923 aa18.46■□□□□ 0.55
CPNE1-201ENST00000317677 MIER1Q8N108 512 aa18.46■□□□□ 0.55
CPNE1-201ENST00000317677 KIDINS220Q9ULH0 1771 aa18.46■□□□□ 0.55
CPNE1-201ENST00000317677 HIRIP3Q9BW71 556 aaPredicted RBP18.45■□□□□ 0.54
CPNE1-201ENST00000317677 SUPT16HQ9Y5B9 1047 aaKnown RBP18.44■□□□□ 0.54
CPNE1-201ENST00000317677 DEPDC5O75140 1603 aa18.44■□□□□ 0.54
CPNE1-201ENST00000317677 NBPF8Q3BBV2 869 aa18.44■□□□□ 0.54
CPNE1-201ENST00000317677 ERICH6Q7L0X2 663 aa18.43■□□□□ 0.54
CPNE1-201ENST00000317677 RICTORQ6R327 1708 aa18.42■□□□□ 0.54
CPNE1-201ENST00000317677 FRMPD1Q5SYB0 1578 aa18.42■□□□□ 0.54
CPNE1-201ENST00000317677 PLA2R1Q13018 1463 aa18.42■□□□□ 0.54
CPNE1-201ENST00000317677 KDM5CP41229 1560 aa18.42■□□□□ 0.54
CPNE1-201ENST00000317677 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.41■□□□□ 0.549e-9■□□□□ 10.7
CPNE1-201ENST00000317677 ZNF518AQ6AHZ1 1483 aa18.4■□□□□ 0.54
CPNE1-201ENST00000317677 POGZQ7Z3K3 1410 aa18.4■□□□□ 0.54
CPNE1-201ENST00000317677 MROH1Q8NDA8 1641 aa18.39■□□□□ 0.53
CPNE1-201ENST00000317677 EIF2AK4Q9P2K8 1649 aaKnown RBP18.38■□□□□ 0.53
CPNE1-201ENST00000317677 E9PCH4 1651 aa18.37■□□□□ 0.53
CPNE1-201ENST00000317677 VWDEQ8N2E2 1590 aa18.37■□□□□ 0.53
CPNE1-201ENST00000317677 ZMYM4Q5VZL5 1548 aa18.36■□□□□ 0.53
CPNE1-201ENST00000317677 ARHGEF40Q8TER5 1519 aa18.35■□□□□ 0.53
CPNE1-201ENST00000317677 DHX29Q7Z478 1369 aaKnown RBP18.35■□□□□ 0.53
CPNE1-201ENST00000317677 HECW2Q9P2P5 1572 aa18.34■□□□□ 0.53
CPNE1-201ENST00000317677 ATP10AO60312 1499 aa18.34■□□□□ 0.53
CPNE1-201ENST00000317677 MLH3Q9UHC1 1453 aa18.33■□□□□ 0.53
CPNE1-201ENST00000317677 ABCA6Q8N139 1617 aa18.33■□□□□ 0.53
CPNE1-201ENST00000317677 PRDM15P57071 1507 aaPredicted RBP18.33■□□□□ 0.52
CPNE1-201ENST00000317677 HSPA5P11021 654 aaKnown RBP18.33■□□□□ 0.52
CPNE1-201ENST00000317677 ARID4BQ4LE39 1312 aaPredicted RBP18.33■□□□□ 0.52
CPNE1-201ENST00000317677 TET3O43151 1660 aa18.32■□□□□ 0.52
CPNE1-201ENST00000317677 UHRF1BP1Q6BDS2 1440 aa18.32■□□□□ 0.52
CPNE1-201ENST00000317677 CCDC144AA2RUR9 1427 aa18.3■□□□□ 0.52
CPNE1-201ENST00000317677 DDX10Q13206 875 aaKnown RBP18.3■□□□□ 0.52
CPNE1-201ENST00000317677 A2MP01023 1474 aa18.29■□□□□ 0.52
CPNE1-201ENST00000317677 RNF17Q9BXT8 1623 aaKnown RBP18.29■□□□□ 0.52
CPNE1-201ENST00000317677 SPATA31E1Q6ZUB1 1445 aa18.29■□□□□ 0.52
CPNE1-201ENST00000317677 MYT1LQ9UL68 1186 aa18.28■□□□□ 0.52
CPNE1-201ENST00000317677 SPHKAPQ2M3C7 1700 aa18.28■□□□□ 0.52
CPNE1-201ENST00000317677 KIF3BO15066 747 aa18.28■□□□□ 0.52
CPNE1-201ENST00000317677 BCORL1Q5H9F3 1711 aa18.28■□□□□ 0.52
CPNE1-201ENST00000317677 ADAMTSL3P82987 1691 aa18.27■□□□□ 0.52
CPNE1-201ENST00000317677 DIP2CQ9Y2E4 1556 aa18.26■□□□□ 0.51
CPNE1-201ENST00000317677 EIF4G2P78344 907 aaKnown RBP eCLIP18.26■□□□□ 0.51
CPNE1-201ENST00000317677 TRPM2O94759 1503 aa18.25■□□□□ 0.51
CPNE1-201ENST00000317677 RALGAPBQ86X10 1494 aa18.25■□□□□ 0.51
CPNE1-201ENST00000317677 YEATS2Q9ULM3 1422 aa18.25■□□□□ 0.51
CPNE1-201ENST00000317677 CEP152O94986 1710 aa18.25■□□□□ 0.51
CPNE1-201ENST00000317677 PTPRTO14522 1441 aa18.24■□□□□ 0.51
CPNE1-201ENST00000317677 CLTCL1P53675 1640 aa18.23■□□□□ 0.51
CPNE1-201ENST00000317677 WASHC2AQ641Q2 1341 aa18.23■□□□□ 0.51
CPNE1-201ENST00000317677 ZNF326Q5BKZ1 582 aaKnown RBP18.22■□□□□ 0.51
CPNE1-201ENST00000317677 POLR1AO95602 1720 aaPredicted RBP18.22■□□□□ 0.51
CPNE1-201ENST00000317677 EFCAB6Q5THR3 1501 aa18.22■□□□□ 0.51
CPNE1-201ENST00000317677 TRPM1Q7Z4N2 1603 aa18.21■□□□□ 0.51
CPNE1-201ENST00000317677 C11orf95C9JLR9 678 aaPredicted RBP18.21■□□□□ 0.51
CPNE1-201ENST00000317677 DCAF11Q8TEB1 546 aa18.21■□□□□ 0.51
CPNE1-201ENST00000317677 LMTK2Q8IWU2 1503 aa18.21■□□□□ 0.51
CPNE1-201ENST00000317677 KANK1Q14678 1352 aa18.21■□□□□ 0.51
CPNE1-201ENST00000317677 KDM2AQ9Y2K7 1162 aa18.21■□□□□ 0.5
CPNE1-201ENST00000317677 MADDQ8WXG6 1647 aa18.2■□□□□ 0.5
CPNE1-201ENST00000317677 PRAG1Q86YV5 1406 aa18.19■□□□□ 0.5
CPNE1-201ENST00000317677 PTPRMP28827 1452 aa18.19■□□□□ 0.5
CPNE1-201ENST00000317677 RGL3Q3MIN7 710 aa18.18■□□□□ 0.5
CPNE1-201ENST00000317677 RIMS1Q86UR5 1692 aaKnown RBP18.16■□□□□ 0.5
CPNE1-201ENST00000317677 USP47Q96K76 1375 aa18.16■□□□□ 0.5
CPNE1-201ENST00000317677 UGGT1Q9NYU2 1555 aa18.16■□□□□ 0.5
CPNE1-201ENST00000317677 SIGLEC1Q9BZZ2 1709 aa18.16■□□□□ 0.5
CPNE1-201ENST00000317677 CCDC7Q96M83 1385 aa18.15■□□□□ 0.5
CPNE1-201ENST00000317677 ABCC3O15438 1527 aa18.14■□□□□ 0.49
CPNE1-201ENST00000317677 MLECQ14165 292 aa18.13■□□□□ 0.49
CPNE1-201ENST00000317677 FER1L4A9Z1Z3 1794 aa18.13■□□□□ 0.49
CPNE1-201ENST00000317677 REREQ9P2R6 1566 aa18.13■□□□□ 0.49
CPNE1-201ENST00000317677 CAMSAP1Q5T5Y3 1602 aa18.11■□□□□ 0.49
CPNE1-201ENST00000317677 MROH2AA6NES4 1674 aa18.11■□□□□ 0.49
CPNE1-201ENST00000317677 LAMC1P11047 1609 aa18.1■□□□□ 0.49
CPNE1-201ENST00000317677 NEURL4Q96JN8 1562 aa18.1■□□□□ 0.49
CPNE1-201ENST00000317677 NPATQ14207 1427 aa18.1■□□□□ 0.49
CPNE1-201ENST00000317677 KIF7Q2M1P5 1343 aa18.1■□□□□ 0.49
CPNE1-201ENST00000317677 GGT6Q6P531 493 aa18.1■□□□□ 0.49
CPNE1-201ENST00000317677 CFAP65Q6ZU64 1925 aaKnown RBP18.09■□□□□ 0.49
CPNE1-201ENST00000317677 GPRASP1Q5JY77 1395 aa18.09■□□□□ 0.49
CPNE1-201ENST00000317677 CARD11Q9BXL7 1154 aa18.09■□□□□ 0.49
CPNE1-201ENST00000317677 NBPF1Q3BBV0 1214 aa18.08■□□□□ 0.49
CPNE1-201ENST00000317677 KIF1BO60333 1816 aa18.08■□□□□ 0.49
CPNE1-201ENST00000317677 CNTLNQ9NXG0 1405 aa18.08■□□□□ 0.48
CPNE1-201ENST00000317677 ROCK2O75116 1388 aaKnown RBP18.08■□□□□ 0.48
CPNE1-201ENST00000317677 IFT172Q9UG01 1749 aa18.07■□□□□ 0.48
CPNE1-201ENST00000317677 AGLP35573 1532 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms