RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 SYNJ2O15056 1496 aa8.94□□□□□ -0.98
ZNF540-201ENST00000316433 SMG6Q86US8 1419 aaKnown RBP8.94□□□□□ -0.98
ZNF540-201ENST00000316433 ERCC6Q03468 1493 aa8.94□□□□□ -0.98
ZNF540-201ENST00000316433 BCORL1Q5H9F3 1711 aa8.94□□□□□ -0.98
ZNF540-201ENST00000316433 GSE1Q14687 1217 aa8.94□□□□□ -0.98
ZNF540-201ENST00000316433 TRIM52Q96A61 297 aa8.94□□□□□ -0.98
ZNF540-201ENST00000316433 CCDC7Q96M83 1385 aa8.93□□□□□ -0.98
ZNF540-201ENST00000316433 KIAA1107Q9UPP5 1409 aa8.93□□□□□ -0.98
ZNF540-201ENST00000316433 IRX6P78412 446 aaPredicted RBP8.92□□□□□ -0.98
ZNF540-201ENST00000316433 ZBED9Q6R2W3 1325 aa8.92□□□□□ -0.98
ZNF540-201ENST00000316433 PLEKHH2Q8IVE3 1493 aa8.92□□□□□ -0.98
ZNF540-201ENST00000316433 GPATCH8Q9UKJ3 1502 aaKnown RBP8.92□□□□□ -0.98
ZNF540-201ENST00000316433 DEPDC5O75140 1603 aa8.91□□□□□ -0.98
ZNF540-201ENST00000316433 PRDM15P57071 1507 aaPredicted RBP8.91□□□□□ -0.98
ZNF540-201ENST00000316433 ANP32CO43423 234 aa8.91□□□□□ -0.98
ZNF540-201ENST00000316433 CDK13Q14004 1512 aaKnown RBP8.91□□□□□ -0.98
ZNF540-201ENST00000316433 GPRASP1Q5JY77 1395 aa8.91□□□□□ -0.98
ZNF540-201ENST00000316433 WDR7Q9Y4E6 1490 aa8.91□□□□□ -0.98
ZNF540-201ENST00000316433 HSP90AA1P07900 732 aaKnown RBP8.9□□□□□ -0.98
ZNF540-201ENST00000316433 DHX29Q7Z478 1369 aaKnown RBP8.9□□□□□ -0.99
ZNF540-201ENST00000316433 PPM1GO15355 546 aaPredicted RBP8.89□□□□□ -0.99
ZNF540-201ENST00000316433 LRPPRCP42704 1394 aaKnown RBP8.89□□□□□ -0.99
ZNF540-201ENST00000316433 CDC42BPBQ9Y5S2 1711 aa8.89□□□□□ -0.99
ZNF540-201ENST00000316433 LAS1LQ9Y4W2 734 aaKnown RBP8.89□□□□□ -0.99
ZNF540-201ENST00000316433 IQGAP1P46940 1657 aa8.88□□□□□ -0.99
ZNF540-201ENST00000316433 MYO5CQ9NQX4 1742 aa8.88□□□□□ -0.99
ZNF540-201ENST00000316433 PRDM4Q9UKN5 801 aa8.87□□□□□ -0.99
ZNF540-201ENST00000316433 KCNA4P22459 653 aa8.86□□□□□ -0.99
ZNF540-201ENST00000316433 MYO3AQ8NEV4 1616 aa8.86□□□□□ -0.99
ZNF540-201ENST00000316433 CEP152O94986 1710 aa8.86□□□□□ -0.99
ZNF540-201ENST00000316433 CALD1Q05682 793 aaKnown RBP8.86□□□□□ -0.99
ZNF540-201ENST00000316433 CCDC144AA2RUR9 1427 aa8.86□□□□□ -0.99
ZNF540-201ENST00000316433 SPHKAPQ2M3C7 1700 aa8.85□□□□□ -0.99
ZNF540-201ENST00000316433 DUOX2Q9NRD8 1548 aa8.85□□□□□ -0.99
ZNF540-201ENST00000316433 FRAT1Q92837 279 aaPredicted RBP8.85□□□□□ -0.99
ZNF540-201ENST00000316433 CCDC141Q6ZP82 1450 aa8.85□□□□□ -0.99
ZNF540-201ENST00000316433 B4GALNT3Q6L9W6 998 aa8.85□□□□□ -0.99
ZNF540-201ENST00000316433 NAP1L2Q9ULW6 460 aaPredicted RBP8.84□□□□□ -0.99
ZNF540-201ENST00000316433 SAMD9LQ8IVG5 1584 aa8.84□□□□□ -0.99
ZNF540-201ENST00000316433 VWDEQ8N2E2 1590 aa8.84□□□□□ -0.99
ZNF540-201ENST00000316433 NAP1L5Q96NT1 182 aaPredicted RBP8.84□□□□□ -0.99
ZNF540-201ENST00000316433 VIRMAQ69YN4 1812 aaKnown RBP8.84□□□□□ -0.99
ZNF540-201ENST00000316433 SYNMO15061 1565 aa8.84□□□□□ -0.99
ZNF540-201ENST00000316433 UHRF1BP1LA0JNW5 1464 aa8.83□□□□□ -1
ZNF540-201ENST00000316433 IFT172Q9UG01 1749 aa8.83□□□□□ -1
ZNF540-201ENST00000316433 EIF4G2P78344 907 aaKnown RBP eCLIP8.83□□□□□ -1
ZNF540-201ENST00000316433 PAXIP1Q6ZW49 1069 aaPredicted RBP8.83□□□□□ -1
ZNF540-201ENST00000316433 SIN3AQ96ST3 1273 aa8.82□□□□□ -1
ZNF540-201ENST00000316433 RRAGDQ9NQL2 400 aaPredicted RBP8.82□□□□□ -1
ZNF540-201ENST00000316433 ABCC2Q92887 1545 aa8.82□□□□□ -1
ZNF540-201ENST00000316433 USP32Q8NFA0 1604 aa8.82□□□□□ -1
ZNF540-201ENST00000316433 BBXQ8WY36 941 aaPredicted RBP8.82□□□□□ -1
ZNF540-201ENST00000316433 CENPJQ9HC77 1338 aaPredicted RBP8.82□□□□□ -1
ZNF540-201ENST00000316433 BRD4O60885 1362 aaPredicted RBP8.82□□□□□ -1
ZNF540-201ENST00000316433 ZNF608Q9ULD9 1512 aaPredicted RBP8.82□□□□□ -1
ZNF540-201ENST00000316433 RGS3P49796 1198 aa8.82□□□□□ -1
ZNF540-201ENST00000316433 CARMIL2Q6F5E8 1435 aa8.81□□□□□ -1
ZNF540-201ENST00000316433 BLMP54132 1417 aaPredicted RBP8.81□□□□□ -1
ZNF540-201ENST00000316433 RSPH4AQ5TD94 716 aa8.81□□□□□ -1
ZNF540-201ENST00000316433 ERBINQ96RT1 1412 aa8.81□□□□□ -1
ZNF540-201ENST00000316433 MPHOSPH9Q99550 1183 aa8.81□□□□□ -1
ZNF540-201ENST00000316433 TDRD9Q8NDG6 1382 aaKnown RBP8.81□□□□□ -1
ZNF540-201ENST00000316433 ANKRD30AQ9BXX3 1397 aa8.81□□□□□ -1
ZNF540-201ENST00000316433 DCAF11Q8TEB1 546 aa8.81□□□□□ -1
ZNF540-201ENST00000316433 COL17A1Q9UMD9 1497 aaPredicted RBP8.81□□□□□ -1
ZNF540-201ENST00000316433 FAM50AQ14320 339 aaKnown RBP8.8□□□□□ -1
ZNF540-201ENST00000316433 ZNF326Q5BKZ1 582 aaKnown RBP8.8□□□□□ -1
ZNF540-201ENST00000316433 PRKRIP1Q9H875 184 aaPredicted RBP8.8□□□□□ -1
ZNF540-201ENST00000316433 FAM135AQ9P2D6 1515 aa8.79□□□□□ -1
ZNF540-201ENST00000316433 TULP1O00294 542 aaPredicted RBP8.79□□□□□ -1
ZNF540-201ENST00000316433 MADDQ8WXG6 1647 aa8.79□□□□□ -1
ZNF540-201ENST00000316433 CHMP4BQ9H444 224 aaKnown RBP8.79□□□□□ -1
ZNF540-201ENST00000316433 GTF2E1P29083 439 aaPredicted RBP8.79□□□□□ -1
ZNF540-201ENST00000316433 HSPA5P11021 654 aaKnown RBP8.78□□□□□ -1
ZNF540-201ENST00000316433 DDX10Q13206 875 aaKnown RBP8.78□□□□□ -1
ZNF540-201ENST00000316433 PPRC1Q5VV67 1664 aaKnown RBP8.78□□□□□ -1
ZNF540-201ENST00000316433 STAC3Q96MF2 364 aa8.78□□□□□ -1
ZNF540-201ENST00000316433 PNNQ9H307 717 aaKnown RBP8.78□□□□□ -1
ZNF540-201ENST00000316433 NPC1L1Q9UHC9 1359 aa8.78□□□□□ -1
ZNF540-201ENST00000316433 TRPM2O94759 1503 aa8.78□□□□□ -1
ZNF540-201ENST00000316433 TET3O43151 1660 aa8.78□□□□□ -1
ZNF540-201ENST00000316433 C9orf84Q5VXU9 1444 aa8.77□□□□□ -1
ZNF540-201ENST00000316433 SCAPERQ9BY12 1400 aa8.77□□□□□ -1
ZNF540-201ENST00000316433 HOMEZQ8IX15 550 aa8.77□□□□□ -1
ZNF540-201ENST00000316433 MYOM1P52179 1685 aa8.77□□□□□ -1.01
ZNF540-201ENST00000316433 PARD3Q8TEW0 1356 aa8.77□□□□□ -1.01
ZNF540-201ENST00000316433 IPO4Q8TEX9 1081 aaKnown RBP8.77□□□□□ -1.01
ZNF540-201ENST00000316433 ANKRD50Q9ULJ7 1429 aa8.77□□□□□ -1.01
ZNF540-201ENST00000316433 NFKBIBQ15653 356 aa8.77□□□□□ -1.01
ZNF540-201ENST00000316433 PDCL3Q9H2J4 239 aa8.77□□□□□ -1.01
ZNF540-201ENST00000316433 ZC3H13Q5T200 1668 aaKnown RBP8.76□□□□□ -1.01
ZNF540-201ENST00000316433 PRAG1Q86YV5 1406 aa8.76□□□□□ -1.01
ZNF540-201ENST00000316433 KIF15Q9NS87 1388 aa8.76□□□□□ -1.01
ZNF540-201ENST00000316433 INO80Q9ULG1 1556 aaPredicted RBP8.76□□□□□ -1.01
ZNF540-201ENST00000316433 ATP10BO94823 1461 aa8.76□□□□□ -1.01
ZNF540-201ENST00000316433 RTEL1-TNFRSF6BF6WH68 1400 aa8.76□□□□□ -1.01
ZNF540-201ENST00000316433 ZMYM3Q14202 1370 aa8.75□□□□□ -1.01
ZNF540-201ENST00000316433 LMTK2Q8IWU2 1503 aa8.75□□□□□ -1.01
ZNF540-201ENST00000316433 CANXP27824 592 aaKnown RBP8.75□□□□□ -1.01
ZNF540-201ENST00000316433 TTC37Q6PGP7 1564 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms