RNA–Protein interactions for RNA: ENST00000303531.11

PRKCB-201, Transcript of protein kinase C beta, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKCB, Length 7,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-201ENST00000303531 TRAK1Q9UPV9 953 aa17.4■□□□□ 0.38
PRKCB-201ENST00000303531 LMOD3Q0VAK6 560 aa17.4■□□□□ 0.38
PRKCB-201ENST00000303531 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.4■□□□□ 0.38
PRKCB-201ENST00000303531 WASHC2CQ9Y4E1 1318 aa17.4■□□□□ 0.38
PRKCB-201ENST00000303531 CHMP3Q9Y3E7 222 aa17.4■□□□□ 0.38
PRKCB-201ENST00000303531 CLSTN1O94985 981 aa17.39■□□□□ 0.38
PRKCB-201ENST00000303531 ARID3AQ99856 593 aa17.39■□□□□ 0.37
PRKCB-201ENST00000303531 PRKRIP1Q9H875 184 aaPredicted RBP17.39■□□□□ 0.37
PRKCB-201ENST00000303531 GORABQ5T7V8 394 aa17.39■□□□□ 0.37
PRKCB-201ENST00000303531 CCDC144AA2RUR9 1427 aa17.38■□□□□ 0.37
PRKCB-201ENST00000303531 PLIN1O60240 522 aa17.38■□□□□ 0.37
PRKCB-201ENST00000303531 HSP90B1P14625 803 aaKnown RBP17.38■□□□□ 0.37
PRKCB-201ENST00000303531 CENPQQ7L2Z9 268 aaPredicted RBP17.37■□□□□ 0.37
PRKCB-201ENST00000303531 HDAC5Q9UQL6 1122 aa17.36■□□□□ 0.37
PRKCB-201ENST00000303531 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.36■□□□□ 0.37
PRKCB-201ENST00000303531 CADPSQ9ULU8 1353 aa17.36■□□□□ 0.37
PRKCB-201ENST00000303531 NGDNQ8NEJ9 315 aaKnown RBP17.35■□□□□ 0.37
PRKCB-201ENST00000303531 BCL2L13Q9BXK5 485 aa17.35■□□□□ 0.37
PRKCB-201ENST00000303531 RUSC2Q8N2Y8 1516 aa17.35■□□□□ 0.37
PRKCB-201ENST00000303531 PDE4AP27815 886 aa17.35■□□□□ 0.37
PRKCB-201ENST00000303531 EXOC6Q8TAG9 804 aa17.35■□□□□ 0.37
PRKCB-201ENST00000303531 RRP1P56182 461 aaKnown RBP17.35■□□□□ 0.37
PRKCB-201ENST00000303531 ZBED9Q6R2W3 1325 aa17.35■□□□□ 0.37
PRKCB-201ENST00000303531 AMPHP49418 695 aa17.35■□□□□ 0.37
PRKCB-201ENST00000303531 ST18O60284 1047 aa17.34■□□□□ 0.37
PRKCB-201ENST00000303531 FAM161AQ3B820 660 aa17.34■□□□□ 0.37
PRKCB-201ENST00000303531 TAF7LQ5H9L4 462 aa17.33■□□□□ 0.37
PRKCB-201ENST00000303531 TPM4P67936 248 aa17.33■□□□□ 0.37
PRKCB-201ENST00000303531 USP47Q96K76 1375 aa17.33■□□□□ 0.37
PRKCB-201ENST00000303531 CSPP1Q1MSJ5 1256 aa17.33■□□□□ 0.36
PRKCB-201ENST00000303531 LTV1Q96GA3 475 aaPredicted RBP17.33■□□□□ 0.36
PRKCB-201ENST00000303531 NUTM2FA1L443 756 aa17.32■□□□□ 0.36
PRKCB-201ENST00000303531 CRBNQ96SW2 442 aa17.32■□□□□ 0.36
PRKCB-201ENST00000303531 SLC4A3P48751 1232 aa17.32■□□□□ 0.36
PRKCB-201ENST00000303531 FOXD4L5Q5VV16 416 aaPredicted RBP17.31■□□□□ 0.36
PRKCB-201ENST00000303531 FOXD4L4Q8WXT5 416 aaPredicted RBP17.31■□□□□ 0.36
PRKCB-201ENST00000303531 E9PSI1 815 aa17.31■□□□□ 0.36
PRKCB-201ENST00000303531 JPH4Q96JJ6 628 aa17.31■□□□□ 0.36
PRKCB-201ENST00000303531 ELL2O00472 640 aaPredicted RBP17.31■□□□□ 0.36
PRKCB-201ENST00000303531 EID1Q9Y6B2 187 aa17.3■□□□□ 0.36
PRKCB-201ENST00000303531 DDX11L8A8MPP1 907 aa17.29■□□□□ 0.36
PRKCB-201ENST00000303531 ANKRD45Q5TZF3 282 aa17.29■□□□□ 0.36
PRKCB-201ENST00000303531 ZKSCAN2Q63HK3 967 aa17.29■□□□□ 0.36
PRKCB-201ENST00000303531 USP35Q9P2H5 1018 aa17.29■□□□□ 0.36
PRKCB-201ENST00000303531 KIF16BQ96L93 1317 aa17.29■□□□□ 0.36
PRKCB-201ENST00000303531 CGNL1Q0VF96 1302 aa17.28■□□□□ 0.36
PRKCB-201ENST00000303531 AMER1Q5JTC6 1135 aaPredicted RBP17.28■□□□□ 0.36
PRKCB-201ENST00000303531 COG6Q9Y2V7 657 aa17.28■□□□□ 0.36
PRKCB-201ENST00000303531 PHF14O94880 888 aa17.27■□□□□ 0.36
PRKCB-201ENST00000303531 UACAQ9BZF9 1416 aa17.27■□□□□ 0.36
PRKCB-201ENST00000303531 CCDC34Q96HJ3 373 aa17.26■□□□□ 0.35
PRKCB-201ENST00000303531 RILPL2Q969X0 211 aa17.26■□□□□ 0.35
PRKCB-201ENST00000303531 APAF1O14727 1248 aa17.25■□□□□ 0.35
PRKCB-201ENST00000303531 EVC2Q86UK5 1308 aa17.24■□□□□ 0.35
PRKCB-201ENST00000303531 ATAD2BQ9ULI0 1458 aa17.23■□□□□ 0.35
PRKCB-201ENST00000303531 COG3Q96JB2 828 aa17.23■□□□□ 0.35
PRKCB-201ENST00000303531 DDX49Q9Y6V7 483 aaKnown RBP17.22■□□□□ 0.35
PRKCB-201ENST00000303531 RASSF8Q8NHQ8 419 aa17.22■□□□□ 0.35
PRKCB-201ENST00000303531 GSE1Q14687 1217 aa17.22■□□□□ 0.35
PRKCB-201ENST00000303531 TOMM22Q9NS69 142 aa17.21■□□□□ 0.35
PRKCB-201ENST00000303531 SMARCA4P51532 1647 aa17.21■□□□□ 0.35
PRKCB-201ENST00000303531 NOC3LQ8WTT2 800 aaKnown RBP17.21■□□□□ 0.35
PRKCB-201ENST00000303531 KIF3AQ9Y496 699 aa17.21■□□□□ 0.35
PRKCB-201ENST00000303531 VGFO15240 615 aaPredicted RBP17.21■□□□□ 0.34
PRKCB-201ENST00000303531 SF3A1Q15459 793 aaKnown RBP17.2■□□□□ 0.34
PRKCB-201ENST00000303531 NCBP3Q53F19 620 aaKnown RBP17.2■□□□□ 0.34
PRKCB-201ENST00000303531 CREBRFQ8IUR6 639 aa17.2■□□□□ 0.34
PRKCB-201ENST00000303531 CCDC9Q9Y3X0 531 aaKnown RBP17.2■□□□□ 0.34
PRKCB-201ENST00000303531 FOXD4L6Q3SYB3 417 aaPredicted RBP17.19■□□□□ 0.34
PRKCB-201ENST00000303531 FOXD4L3Q6VB84 417 aaPredicted RBP17.19■□□□□ 0.34
PRKCB-201ENST00000303531 MINK1Q8N4C8 1332 aaPredicted RBP17.19■□□□□ 0.34
PRKCB-201ENST00000303531 H3BQV1 296 aa17.18■□□□□ 0.34
PRKCB-201ENST00000303531 IFFO2Q5TF58 517 aa17.18■□□□□ 0.34
PRKCB-201ENST00000303531 FANCIQ9NVI1 1328 aa17.18■□□□□ 0.34
PRKCB-201ENST00000303531 SKOR2Q2VWA4 1001 aaPredicted RBP17.17■□□□□ 0.34
PRKCB-201ENST00000303531 TMX4Q9H1E5 349 aaPredicted RBP17.17■□□□□ 0.34
PRKCB-201ENST00000303531 DDX19BQ9UMR2 479 aa17.17■□□□□ 0.34
PRKCB-201ENST00000303531 FANCD2Q9BXW9 1451 aa17.16■□□□□ 0.34
PRKCB-201ENST00000303531 ATP6V1DQ9Y5K8 247 aa17.15■□□□□ 0.34
PRKCB-201ENST00000303531 PTPRGP23470 1445 aa17.15■□□□□ 0.34
PRKCB-201ENST00000303531 FAM184AQ8NB25 1140 aa17.15■□□□□ 0.34
PRKCB-201ENST00000303531 FRAT2O75474 233 aaPredicted RBP17.15■□□□□ 0.34
PRKCB-201ENST00000303531 DZIP1LQ8IYY4 767 aaKnown RBP17.15■□□□□ 0.34
PRKCB-201ENST00000303531 DIAPH1O60610 1272 aaKnown RBP17.14■□□□□ 0.33
PRKCB-201ENST00000303531 C1orf141Q5JVX7 400 aa17.14■□□□□ 0.33
PRKCB-201ENST00000303531 CCDC7Q96M83 1385 aa17.14■□□□□ 0.33
PRKCB-201ENST00000303531 DIAPH3Q9NSV4 1193 aa17.14■□□□□ 0.33
PRKCB-201ENST00000303531 KIF7Q2M1P5 1343 aa17.13■□□□□ 0.33
PRKCB-201ENST00000303531 RIPK4P57078 832 aa17.13■□□□□ 0.33
PRKCB-201ENST00000303531 TEFQ10587 303 aa17.12■□□□□ 0.33
PRKCB-201ENST00000303531 GOLGA6L1Q8N7Z2 621 aa17.12■□□□□ 0.33
PRKCB-201ENST00000303531 MYOM3Q5VTT5 1437 aa17.12■□□□□ 0.33
PRKCB-201ENST00000303531 REC8O95072 547 aa17.12■□□□□ 0.33
PRKCB-201ENST00000303531 GTF2E1P29083 439 aaPredicted RBP17.11■□□□□ 0.33
PRKCB-201ENST00000303531 FGD6Q6ZV73 1430 aa17.11■□□□□ 0.33
PRKCB-201ENST00000303531 NGEFQ8N5V2 710 aa17.11■□□□□ 0.33
PRKCB-201ENST00000303531 EIF2S2P20042 333 aaKnown RBP17.11■□□□□ 0.33
PRKCB-201ENST00000303531 TPM3P06753 285 aa17.11■□□□□ 0.33
PRKCB-201ENST00000303531 GOLGA6L19H0YKK7 550 aa17.1■□□□□ 0.33
PRKCB-201ENST00000303531 RUNDC1Q96C34 613 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms