RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 SIN3AQ96ST3 1273 aa12.85□□□□□ -0.35
CLIP1-201ENST00000302528 AKAP17AQ02040 695 aaKnown RBP12.85□□□□□ -0.35
CLIP1-201ENST00000302528 SLC4A10Q6U841 1118 aa12.85□□□□□ -0.35
CLIP1-201ENST00000302528 PCMTD1Q96MG8 357 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-201ENST00000302528 CCDC88BA6NC98 1476 aa12.85□□□□□ -0.35
CLIP1-201ENST00000302528 ABCC8Q09428 1581 aa12.84□□□□□ -0.35
CLIP1-201ENST00000302528 IPO7O95373 1038 aaKnown RBP12.84□□□□□ -0.35
CLIP1-201ENST00000302528 FAM184AQ8NB25 1140 aa12.83□□□□□ -0.36
CLIP1-201ENST00000302528 RCAN3Q9UKA8 241 aa12.83□□□□□ -0.36
CLIP1-201ENST00000302528 TRHP20396 242 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-201ENST00000302528 SMC4Q9NTJ3 1288 aa12.83□□□□□ -0.36
CLIP1-201ENST00000302528 KTN1Q86UP2 1357 aaKnown RBP12.82□□□□□ -0.36
CLIP1-201ENST00000302528 ZNF592Q92610 1267 aa12.82□□□□□ -0.36
CLIP1-201ENST00000302528 CTDP1Q9Y5B0 961 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-201ENST00000302528 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.81□□□□□ -0.361e-9■■■■■ 73.1
CLIP1-201ENST00000302528 WIZO95785 1651 aa12.81□□□□□ -0.36
CLIP1-201ENST00000302528 CHMP4CQ96CF2 233 aa12.81□□□□□ -0.36
CLIP1-201ENST00000302528 RAD21O60216 631 aa12.8□□□□□ -0.36
CLIP1-201ENST00000302528 TEX35Q5T0J7 233 aa12.8□□□□□ -0.36
CLIP1-201ENST00000302528 DDX11L8A8MPP1 907 aa12.8□□□□□ -0.36
CLIP1-201ENST00000302528 CCDC47Q96A33 483 aaKnown RBP12.8□□□□□ -0.36
CLIP1-201ENST00000302528 CDR1P51861 262 aa12.79□□□□□ -0.36
CLIP1-201ENST00000302528 SYNE3Q6ZMZ3 975 aa12.79□□□□□ -0.36
CLIP1-201ENST00000302528 ANKRD20A12PQ8NF67 263 aa12.79□□□□□ -0.36
CLIP1-201ENST00000302528 VSIG10Q8N0Z9 540 aa12.79□□□□□ -0.36
CLIP1-201ENST00000302528 ATP6V1DQ9Y5K8 247 aa12.79□□□□□ -0.36
CLIP1-201ENST00000302528 TRIM34Q9BYJ4 488 aa12.78□□□□□ -0.36
CLIP1-201ENST00000302528 VPS8Q8N3P4 1428 aa12.78□□□□□ -0.36
CLIP1-201ENST00000302528 MCTP1Q6DN14 999 aa12.77□□□□□ -0.36
CLIP1-201ENST00000302528 RUFY1Q96T51 708 aa12.77□□□□□ -0.36
CLIP1-201ENST00000302528 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLIP1-201ENST00000302528 DDX49Q9Y6V7 483 aaKnown RBP12.77□□□□□ -0.37
CLIP1-201ENST00000302528 CLUAP1Q96AJ1 413 aa12.76□□□□□ -0.37
CLIP1-201ENST00000302528 AMOTL1Q8IY63 956 aa12.76□□□□□ -0.37
CLIP1-201ENST00000302528 FOXD4L6Q3SYB3 417 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-201ENST00000302528 FOXD4L3Q6VB84 417 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-201ENST00000302528 IPO9Q96P70 1041 aaKnown RBP12.76□□□□□ -0.37
CLIP1-201ENST00000302528 RSPH6AQ9H0K4 717 aa12.76□□□□□ -0.37
CLIP1-201ENST00000302528 HOMER1Q86YM7 354 aa12.76□□□□□ -0.37
CLIP1-201ENST00000302528 CCER2I3L3R5 266 aa12.75□□□□□ -0.37
CLIP1-201ENST00000302528 TRIM29Q14134 588 aa12.75□□□□□ -0.37
CLIP1-201ENST00000302528 CT47A1Q5JQC4 288 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-201ENST00000302528 CPLX2Q6PUV4 134 aaKnown RBP12.75□□□□□ -0.37
CLIP1-201ENST00000302528 BAZ1BQ9UIG0 1483 aaKnown RBP12.75□□□□□ -0.37
CLIP1-201ENST00000302528 AK7Q96M32 723 aa12.75□□□□□ -0.37
CLIP1-201ENST00000302528 NOL10Q9BSC4 688 aaKnown RBP12.75□□□□□ -0.37
CLIP1-201ENST00000302528 ODF2Q5BJF6 829 aa12.75□□□□□ -0.37
CLIP1-201ENST00000302528 RILPL2Q969X0 211 aa12.75□□□□□ -0.37
CLIP1-201ENST00000302528 CCDC43Q96MW1 224 aaKnown RBP12.74□□□□□ -0.37
CLIP1-201ENST00000302528 DHX16O60231 1041 aaKnown RBP12.74□□□□□ -0.37
CLIP1-201ENST00000302528 GGT6Q6P531 493 aa12.73□□□□□ -0.37
CLIP1-201ENST00000302528 NAP1L1P55209 391 aaKnown RBP12.73□□□□□ -0.37
CLIP1-201ENST00000302528 CCNB3Q8WWL7 1395 aa12.73□□□□□ -0.37
CLIP1-201ENST00000302528 CWC22Q9HCG8 908 aaKnown RBP12.73□□□□□ -0.37
CLIP1-201ENST00000302528 KIF27Q86VH2 1401 aa12.72□□□□□ -0.37
CLIP1-201ENST00000302528 LMOD3Q0VAK6 560 aa12.72□□□□□ -0.37
CLIP1-201ENST00000302528 NOM1Q5C9Z4 860 aaKnown RBP12.72□□□□□ -0.37
CLIP1-201ENST00000302528 MAP7D2Q96T17 732 aa12.72□□□□□ -0.37
CLIP1-201ENST00000302528 TOP2AP11388 1531 aaKnown RBP12.72□□□□□ -0.37
CLIP1-201ENST00000302528 CCDC191Q8NCU4 936 aa12.72□□□□□ -0.37
CLIP1-201ENST00000302528 SKOR2Q2VWA4 1001 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-201ENST00000302528 ACBD3Q9H3P7 528 aa12.71□□□□□ -0.37
CLIP1-201ENST00000302528 HOOK1Q9UJC3 728 aaKnown RBP12.71□□□□□ -0.37
CLIP1-201ENST00000302528 MSH5O43196 834 aa12.71□□□□□ -0.38
CLIP1-201ENST00000302528 CENPJQ9HC77 1338 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-201ENST00000302528 HSPA5P11021 654 aaKnown RBP12.7□□□□□ -0.38
CLIP1-201ENST00000302528 AMPHP49418 695 aa12.7□□□□□ -0.38
CLIP1-201ENST00000302528 LRRFIP1Q32MZ4 808 aaKnown RBP12.7□□□□□ -0.38
CLIP1-201ENST00000302528 RALBP1Q15311 655 aa12.7□□□□□ -0.38
CLIP1-201ENST00000302528 LTV1Q96GA3 475 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-201ENST00000302528 R3HCC1Q9Y3T6 440 aaKnown RBP12.7□□□□□ -0.38
CLIP1-201ENST00000302528 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-201ENST00000302528 CPLX1O14810 134 aa12.69□□□□□ -0.38
CLIP1-201ENST00000302528 ZFYVE27Q5T4F4 411 aa12.69□□□□□ -0.38
CLIP1-201ENST00000302528 DCTN1Q14203 1278 aa12.69□□□□□ -0.38
CLIP1-201ENST00000302528 HSP90B2PQ58FF3 399 aa12.68□□□□□ -0.38
CLIP1-201ENST00000302528 DIAPH3Q9NSV4 1193 aa12.68□□□□□ -0.38
CLIP1-201ENST00000302528 ARGLU1Q9NWB6 273 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-201ENST00000302528 NGDNQ8NEJ9 315 aaKnown RBP12.68□□□□□ -0.38
CLIP1-201ENST00000302528 HSP90AB2PQ58FF8 381 aa12.68□□□□□ -0.38
CLIP1-201ENST00000302528 MNS1Q8NEH6 495 aa12.68□□□□□ -0.38
CLIP1-201ENST00000302528 TERF2IPQ9NYB0 399 aa12.68□□□□□ -0.38
CLIP1-201ENST00000302528 BICD2Q8TD16 824 aa12.67□□□□□ -0.38
CLIP1-201ENST00000302528 FAM13BQ9NYF5 915 aa12.67□□□□□ -0.38
CLIP1-201ENST00000302528 CCDC173Q0VFZ6 552 aa12.67□□□□□ -0.38
CLIP1-201ENST00000302528 PAF1Q8N7H5 531 aa12.67□□□□□ -0.38
CLIP1-201ENST00000302528 APPP05067 770 aa12.67□□□□□ -0.38
CLIP1-201ENST00000302528 CCDC146Q8IYE0 955 aa12.66□□□□□ -0.38
CLIP1-201ENST00000302528 H0YHG0 523 aa12.66□□□□□ -0.38
CLIP1-201ENST00000302528 RDXP35241 583 aaKnown RBP12.66□□□□□ -0.38
CLIP1-201ENST00000302528 ZKSCAN1P17029 563 aaPredicted RBP12.65□□□□□ -0.38
CLIP1-201ENST00000302528 ROCK2O75116 1388 aaKnown RBP12.65□□□□□ -0.38
CLIP1-201ENST00000302528 ANKRD45Q5TZF3 282 aa12.65□□□□□ -0.38
CLIP1-201ENST00000302528 RUFY2Q8WXA3 655 aa12.65□□□□□ -0.38
CLIP1-201ENST00000302528 FBXW7Q969H0 707 aa12.65□□□□□ -0.38
CLIP1-201ENST00000302528 OFD1O75665 1012 aa12.65□□□□□ -0.38
CLIP1-201ENST00000302528 KANK4Q5T7N3 995 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-201ENST00000302528 TRDNQ13061 729 aa12.64□□□□□ -0.39
CLIP1-201ENST00000302528 SAMD1Q6SPF0 538 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-201ENST00000302528 NFXL1Q6ZNB6 911 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms