RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 PDS5BQ9NTI5 1447 aa9.46□□□□□ -0.9
SF3B3-201ENST00000302516 HSP90B1P14625 803 aaKnown RBP9.46□□□□□ -0.9
SF3B3-201ENST00000302516 U2AF1L5P0DN76 240 aaPredicted RBP9.45□□□□□ -0.9
SF3B3-201ENST00000302516 U2AF1Q01081 240 aaKnown RBP eCLIP9.45□□□□□ -0.94e-8■■□□□ 12.3
SF3B3-201ENST00000302516 CLSTN1O94985 981 aa9.45□□□□□ -0.9
SF3B3-201ENST00000302516 A0A0U1RQG5 324 aaPredicted RBP9.45□□□□□ -0.9
SF3B3-201ENST00000302516 CCDC144AA2RUR9 1427 aa9.45□□□□□ -0.9
SF3B3-201ENST00000302516 TULP1O00294 542 aaPredicted RBP9.44□□□□□ -0.9
SF3B3-201ENST00000302516 SENP3-EIF4A1A0A087X0R7 540 aa9.44□□□□□ -0.9
SF3B3-201ENST00000302516 TEX35Q5T0J7 233 aa9.44□□□□□ -0.9
SF3B3-201ENST00000302516 TPM1P09493 284 aa9.44□□□□□ -0.9
SF3B3-201ENST00000302516 TRIM6-TRIM34B2RNG4 842 aa9.43□□□□□ -0.9
SF3B3-201ENST00000302516 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.43□□□□□ -0.9
SF3B3-201ENST00000302516 E9PSI1 815 aa9.43□□□□□ -0.9
SF3B3-201ENST00000302516 TSR1Q2NL82 804 aaKnown RBP9.42□□□□□ -0.9
SF3B3-201ENST00000302516 REC8O95072 547 aa9.42□□□□□ -0.9
SF3B3-201ENST00000302516 RRP1P56182 461 aaKnown RBP9.42□□□□□ -0.9
SF3B3-201ENST00000302516 TAOK2Q9UL54 1235 aa9.42□□□□□ -0.9
SF3B3-201ENST00000302516 GOLGA6L19H0YKK7 550 aa9.42□□□□□ -0.9
SF3B3-201ENST00000302516 TPM2P07951 284 aa9.42□□□□□ -0.9
SF3B3-201ENST00000302516 LRRFIP1Q32MZ4 808 aaKnown RBP9.41□□□□□ -0.9
SF3B3-201ENST00000302516 DHX57Q6P158 1386 aaKnown RBP9.41□□□□□ -0.9
SF3B3-201ENST00000302516 MAP7D2Q96T17 732 aa9.41□□□□□ -0.9
SF3B3-201ENST00000302516 USP47Q96K76 1375 aa9.4□□□□□ -0.9
SF3B3-201ENST00000302516 PDE4AP27815 886 aa9.4□□□□□ -0.9
SF3B3-201ENST00000302516 SUPT6HQ7KZ85 1726 aaKnown RBP9.4□□□□□ -0.91
SF3B3-201ENST00000302516 HOOK1Q9UJC3 728 aaKnown RBP9.4□□□□□ -0.91
SF3B3-201ENST00000302516 LMOD2Q6P5Q4 547 aa9.4□□□□□ -0.91
SF3B3-201ENST00000302516 NOM1Q5C9Z4 860 aaKnown RBP9.39□□□□□ -0.91
SF3B3-201ENST00000302516 ERICH3Q5RHP9 1530 aa9.39□□□□□ -0.91
SF3B3-201ENST00000302516 H3BQV1 296 aa9.39□□□□□ -0.91
SF3B3-201ENST00000302516 IFFO2Q5TF58 517 aa9.39□□□□□ -0.91
SF3B3-201ENST00000302516 GORABQ5T7V8 394 aa9.39□□□□□ -0.91
SF3B3-201ENST00000302516 APBB1O00213 710 aa9.38□□□□□ -0.91
SF3B3-201ENST00000302516 DDX49Q9Y6V7 483 aaKnown RBP9.38□□□□□ -0.91
SF3B3-201ENST00000302516 SCAPERQ9BY12 1400 aa9.38□□□□□ -0.91
SF3B3-201ENST00000302516 KANK4Q5T7N3 995 aaPredicted RBP9.38□□□□□ -0.91
SF3B3-201ENST00000302516 RASSF8Q8NHQ8 419 aa9.38□□□□□ -0.91
SF3B3-201ENST00000302516 RUFY2Q8WXA3 655 aa9.38□□□□□ -0.91
SF3B3-201ENST00000302516 ZKSCAN2Q63HK3 967 aa9.37□□□□□ -0.91
SF3B3-201ENST00000302516 SENP3Q9H4L4 574 aaPredicted RBP9.37□□□□□ -0.91
SF3B3-201ENST00000302516 CEP89Q96ST8 783 aa9.37□□□□□ -0.91
SF3B3-201ENST00000302516 CNTLNQ9NXG0 1405 aa9.37□□□□□ -0.91
SF3B3-201ENST00000302516 MIA2Q96PC5 1412 aa9.37□□□□□ -0.91
SF3B3-201ENST00000302516 PLEKHG5O94827 1062 aa9.37□□□□□ -0.91
SF3B3-201ENST00000302516 ARID3AQ99856 593 aa9.37□□□□□ -0.91
SF3B3-201ENST00000302516 AMER1Q5JTC6 1135 aaPredicted RBP9.37□□□□□ -0.91
SF3B3-201ENST00000302516 ACBD3Q9H3P7 528 aa9.37□□□□□ -0.91
SF3B3-201ENST00000302516 DDX19BQ9UMR2 479 aa9.37□□□□□ -0.91
SF3B3-201ENST00000302516 NINLQ9Y2I6 1382 aa9.37□□□□□ -0.91
SF3B3-201ENST00000302516 FHOD3Q2V2M9 1422 aa9.37□□□□□ -0.91
SF3B3-201ENST00000302516 ANKRD20A12PQ8NF67 263 aa9.36□□□□□ -0.91
SF3B3-201ENST00000302516 SF3A1Q15459 793 aaKnown RBP9.36□□□□□ -0.91
SF3B3-201ENST00000302516 BECN2A8MW95 431 aa9.36□□□□□ -0.91
SF3B3-201ENST00000302516 ARGLU1Q9NWB6 273 aaPredicted RBP9.36□□□□□ -0.91
SF3B3-201ENST00000302516 ZNF771Q7L3S4 317 aaPredicted RBP9.36□□□□□ -0.91
SF3B3-201ENST00000302516 EFCAB2Q5VUJ9 269 aa9.36□□□□□ -0.91
SF3B3-201ENST00000302516 NUCB2P80303 420 aa9.35□□□□□ -0.91
SF3B3-201ENST00000302516 TPD52L1Q16890 204 aaPredicted RBP9.35□□□□□ -0.91
SF3B3-201ENST00000302516 ISY1Q9ULR0 285 aaKnown RBP9.35□□□□□ -0.91
SF3B3-201ENST00000302516 FYCO1Q9BQS8 1478 aa9.35□□□□□ -0.91
SF3B3-201ENST00000302516 TMX4Q9H1E5 349 aaPredicted RBP9.35□□□□□ -0.91
SF3B3-201ENST00000302516 IPO7O95373 1038 aaKnown RBP9.35□□□□□ -0.91
SF3B3-201ENST00000302516 L3MBTL2Q969R5 705 aa9.35□□□□□ -0.91
SF3B3-201ENST00000302516 CHMP5Q9NZZ3 219 aa9.35□□□□□ -0.91
SF3B3-201ENST00000302516 CCDC39Q9UFE4 941 aa9.35□□□□□ -0.91
SF3B3-201ENST00000302516 DHX8Q14562 1220 aaKnown RBP9.34□□□□□ -0.91
SF3B3-201ENST00000302516 CWC15Q9P013 229 aaKnown RBP9.34□□□□□ -0.91
SF3B3-201ENST00000302516 TAF7LQ5H9L4 462 aa9.34□□□□□ -0.91
SF3B3-201ENST00000302516 LETM1O95202 739 aaPredicted RBP9.33□□□□□ -0.92
SF3B3-201ENST00000302516 FAM184AQ8NB25 1140 aa9.33□□□□□ -0.92
SF3B3-201ENST00000302516 EFCAB5A4FU69 1503 aa9.33□□□□□ -0.92
SF3B3-201ENST00000302516 FAM43AQ8N2R8 423 aa9.33□□□□□ -0.92
SF3B3-201ENST00000302516 AK7Q96M32 723 aa9.33□□□□□ -0.92
SF3B3-201ENST00000302516 PRKRIP1Q9H875 184 aaPredicted RBP9.33□□□□□ -0.92
SF3B3-201ENST00000302516 MYOM3Q5VTT5 1437 aa9.33□□□□□ -0.92
SF3B3-201ENST00000302516 CDR1P51861 262 aa9.33□□□□□ -0.92
SF3B3-201ENST00000302516 HECW1Q76N89 1606 aa9.33□□□□□ -0.92
SF3B3-201ENST00000302516 FOXD1Q16676 465 aa9.33□□□□□ -0.92
SF3B3-201ENST00000302516 KIF7Q2M1P5 1343 aa9.33□□□□□ -0.92
SF3B3-201ENST00000302516 EVC2Q86UK5 1308 aa9.33□□□□□ -0.92
SF3B3-201ENST00000302516 ZKSCAN1P17029 563 aaPredicted RBP9.33□□□□□ -0.92
SF3B3-201ENST00000302516 NAT10Q9H0A0 1025 aaKnown RBP9.33□□□□□ -0.92
SF3B3-201ENST00000302516 DIAPH3Q9NSV4 1193 aa9.32□□□□□ -0.92
SF3B3-201ENST00000302516 CCP110O43303 1012 aa9.32□□□□□ -0.92
SF3B3-201ENST00000302516 BRD4O60885 1362 aaPredicted RBP9.32□□□□□ -0.92
SF3B3-201ENST00000302516 RNF20Q5VTR2 975 aa9.32□□□□□ -0.92
SF3B3-201ENST00000302516 STAC3Q96MF2 364 aa9.32□□□□□ -0.92
SF3B3-201ENST00000302516 CALRP27797 417 aaKnown RBP9.32□□□□□ -0.92
SF3B3-201ENST00000302516 MRE11P49959 708 aa9.31□□□□□ -0.92
SF3B3-201ENST00000302516 AKAP17AQ02040 695 aaKnown RBP9.31□□□□□ -0.92
SF3B3-201ENST00000302516 EHBP1L1Q8N3D4 1523 aa9.31□□□□□ -0.92
SF3B3-201ENST00000302516 CPLX2Q6PUV4 134 aaKnown RBP9.31□□□□□ -0.92
SF3B3-201ENST00000302516 INTS3Q68E01 1043 aaKnown RBP9.31□□□□□ -0.92
SF3B3-201ENST00000302516 CCDC146Q8IYE0 955 aa9.31□□□□□ -0.92
SF3B3-201ENST00000302516 CHMP3Q9Y3E7 222 aa9.31□□□□□ -0.92
SF3B3-201ENST00000302516 SAFB2Q14151 953 aaKnown RBP eCLIP9.31□□□□□ -0.92
SF3B3-201ENST00000302516 CCDC47Q96A33 483 aaKnown RBP9.3□□□□□ -0.92
SF3B3-201ENST00000302516 VSIG10Q8N0Z9 540 aa9.3□□□□□ -0.92
SF3B3-201ENST00000302516 STK26Q9P289 416 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms