RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 BCL11AQ9H165 835 aa30.29■■■□□ 2.44
TPM4-201ENST00000300933 MAST1Q9Y2H9 1570 aa30.29■■■□□ 2.44
TPM4-201ENST00000300933 PLA2R1Q13018 1463 aa30.28■■■□□ 2.44
TPM4-201ENST00000300933 PRKRIP1Q9H875 184 aaPredicted RBP30.27■■■□□ 2.44
TPM4-201ENST00000300933 WDR7Q9Y4E6 1490 aa30.27■■■□□ 2.44
TPM4-201ENST00000300933 ABCC1P33527 1531 aa30.27■■■□□ 2.44
TPM4-201ENST00000300933 ST20-MTHFSA0A0A6YYL1 179 aa30.26■■■□□ 2.43
TPM4-201ENST00000300933 HNRNPUQ00839 825 aaKnown RBP eCLIP30.25■■■□□ 2.43
TPM4-201ENST00000300933 NBPF1Q3BBV0 1214 aa30.23■■■□□ 2.43
TPM4-201ENST00000300933 BCORL1Q5H9F3 1711 aa30.23■■■□□ 2.43
TPM4-201ENST00000300933 DUOX2Q9NRD8 1548 aa30.22■■■□□ 2.43
TPM4-201ENST00000300933 PLXNC1O60486 1568 aa30.21■■■□□ 2.43
TPM4-201ENST00000300933 UHRF1BP1Q6BDS2 1440 aa30.21■■■□□ 2.43
TPM4-201ENST00000300933 ASXL2Q76L83 1435 aa30.21■■■□□ 2.43
TPM4-201ENST00000300933 FAM9BQ8IZU0 186 aa30.21■■■□□ 2.43
TPM4-201ENST00000300933 FANCAO15360 1455 aa30.19■■■□□ 2.42
TPM4-201ENST00000300933 ROCK2O75116 1388 aaKnown RBP30.19■■■□□ 2.42
TPM4-201ENST00000300933 UNC13BO14795 1591 aa30.18■■■□□ 2.42
TPM4-201ENST00000300933 RALGAPBQ86X10 1494 aa30.17■■■□□ 2.42
TPM4-201ENST00000300933 NPM1P06748 294 aaKnown RBP eCLIP30.17■■■□□ 2.42
TPM4-201ENST00000300933 MRS2Q9HD23 443 aa30.17■■■□□ 2.42
TPM4-201ENST00000300933 KDM5CP41229 1560 aa30.16■■■□□ 2.42
TPM4-201ENST00000300933 SCAPERQ9BY12 1400 aa30.15■■■□□ 2.42
TPM4-201ENST00000300933 ERBINQ96RT1 1412 aa30.15■■■□□ 2.42
TPM4-201ENST00000300933 KIF3BO15066 747 aa30.13■■■□□ 2.41
TPM4-201ENST00000300933 RBM19Q9Y4C8 960 aaKnown RBP30.12■■■□□ 2.41
TPM4-201ENST00000300933 IQGAP3Q86VI3 1631 aa30.11■■■□□ 2.41
TPM4-201ENST00000300933 NEFLP07196 543 aa30.09■■■□□ 2.41
TPM4-201ENST00000300933 SENP3-EIF4A1A0A087X0R7 540 aa30.09■■■□□ 2.41
TPM4-201ENST00000300933 ADGRL1O94910 1474 aa30.08■■■□□ 2.41
TPM4-201ENST00000300933 A2MP01023 1474 aa30.08■■■□□ 2.41
TPM4-201ENST00000300933 PRAG1Q86YV5 1406 aa30.07■■■□□ 2.4
TPM4-201ENST00000300933 ZFYVE16Q7Z3T8 1539 aa30.07■■■□□ 2.4
TPM4-201ENST00000300933 DHX29Q7Z478 1369 aaKnown RBP30.05■■■□□ 2.4
TPM4-201ENST00000300933 POLR1AO95602 1720 aaPredicted RBP30.03■■■□□ 2.4
TPM4-201ENST00000300933 MAGI2Q86UL8 1455 aa30.02■■■□□ 2.4
TPM4-201ENST00000300933 ABCA9Q8IUA7 1624 aa30.02■■■□□ 2.4
TPM4-201ENST00000300933 RTEL1-TNFRSF6BF6WH68 1400 aa30.01■■■□□ 2.39
TPM4-201ENST00000300933 ARAP3Q8WWN8 1544 aa29.99■■■□□ 2.39
TPM4-201ENST00000300933 ATP7AQ04656 1500 aa29.99■■■□□ 2.39
TPM4-201ENST00000300933 E9PCH4 1651 aa29.93■■■□□ 2.38
TPM4-201ENST00000300933 TRPM1Q7Z4N2 1603 aa29.93■■■□□ 2.38
TPM4-201ENST00000300933 IRX6P78412 446 aaPredicted RBP29.92■■■□□ 2.38
TPM4-201ENST00000300933 CD109Q6YHK3 1445 aa29.92■■■□□ 2.38
TPM4-201ENST00000300933 ARID4BQ4LE39 1312 aaPredicted RBP29.91■■■□□ 2.38
TPM4-201ENST00000300933 ATP10AO60312 1499 aa29.9■■■□□ 2.38
TPM4-201ENST00000300933 CYB5RLQ6IPT4 315 aa29.89■■■□□ 2.37
TPM4-201ENST00000300933 INO80Q9ULG1 1556 aaPredicted RBP29.88■■■□□ 2.37
TPM4-201ENST00000300933 RAPGEF3O95398 923 aa29.88■■■□□ 2.37
TPM4-201ENST00000300933 KANK1Q14678 1352 aa29.88■■■□□ 2.37
TPM4-201ENST00000300933 GGT6Q6P531 493 aa29.87■■■□□ 2.37
TPM4-201ENST00000300933 TESK2Q96S53 571 aa29.86■■■□□ 2.37
TPM4-201ENST00000300933 DISP3Q9P2K9 1392 aa29.84■■■□□ 2.37
TPM4-201ENST00000300933 GPRASP1Q5JY77 1395 aa29.81■■■□□ 2.36
TPM4-201ENST00000300933 UGGT1Q9NYU2 1555 aa29.81■■■□□ 2.36
TPM4-201ENST00000300933 MSH5O43196 834 aa29.81■■■□□ 2.36
TPM4-201ENST00000300933 TMC1Q8TDI8 760 aa29.8■■■□□ 2.36
TPM4-201ENST00000300933 KIDINS220Q9ULH0 1771 aa29.79■■■□□ 2.36
TPM4-201ENST00000300933 CHGAP10645 457 aaKnown RBP29.78■■■□□ 2.36
TPM4-201ENST00000300933 CLTCL1P53675 1640 aa29.78■■■□□ 2.36
TPM4-201ENST00000300933 ZNF518AQ6AHZ1 1483 aa29.77■■■□□ 2.36
TPM4-201ENST00000300933 DEPDC5O75140 1603 aa29.77■■■□□ 2.36
TPM4-201ENST00000300933 PTPRTO14522 1441 aa29.77■■■□□ 2.36
TPM4-201ENST00000300933 CFAP65Q6ZU64 1925 aaKnown RBP29.76■■■□□ 2.35
TPM4-201ENST00000300933 TRPM2O94759 1503 aa29.76■■■□□ 2.35
TPM4-201ENST00000300933 CC2D1BQ5T0F9 858 aaKnown RBP29.75■■■□□ 2.35
TPM4-201ENST00000300933 SPHKAPQ2M3C7 1700 aa29.74■■■□□ 2.35
TPM4-201ENST00000300933 PANK3Q9H999 370 aa29.73■■■□□ 2.35
TPM4-201ENST00000300933 MROH1Q8NDA8 1641 aa29.73■■■□□ 2.35
TPM4-201ENST00000300933 PRDM15P57071 1507 aaPredicted RBP29.72■■■□□ 2.35
TPM4-201ENST00000300933 TET3O43151 1660 aa29.72■■■□□ 2.35
TPM4-201ENST00000300933 TMF1P82094 1093 aa29.71■■■□□ 2.35
TPM4-201ENST00000300933 PNISRQ8TF01 805 aaKnown RBP29.71■■■□□ 2.35
TPM4-201ENST00000300933 CFAP70Q5T0N1 1121 aa29.7■■■□□ 2.35
TPM4-201ENST00000300933 ZBED9Q6R2W3 1325 aa29.7■■■□□ 2.34
TPM4-201ENST00000300933 POGZQ7Z3K3 1410 aa29.69■■■□□ 2.34
TPM4-201ENST00000300933 PER1O15534 1290 aaPredicted RBP29.69■■■□□ 2.34
TPM4-201ENST00000300933 VWDEQ8N2E2 1590 aa29.69■■■□□ 2.34
TPM4-201ENST00000300933 ADGRF5Q8IZF2 1346 aa29.69■■■□□ 2.34
TPM4-201ENST00000300933 SENP3Q9H4L4 574 aaPredicted RBP29.67■■■□□ 2.34
TPM4-201ENST00000300933 EIF2AK4Q9P2K8 1649 aaKnown RBP29.66■■■□□ 2.34
TPM4-201ENST00000300933 COL17A1Q9UMD9 1497 aaPredicted RBP29.66■■■□□ 2.34
TPM4-201ENST00000300933 MADDQ8WXG6 1647 aa29.65■■■□□ 2.34
TPM4-201ENST00000300933 MYBBP1AQ9BQG0 1328 aaKnown RBP29.64■■■□□ 2.34
TPM4-201ENST00000300933 WASHC2CQ9Y4E1 1318 aa29.64■■■□□ 2.34
TPM4-201ENST00000300933 SALL2Q9Y467 1007 aaPredicted RBP29.64■■■□□ 2.33
TPM4-201ENST00000300933 CEP152O94986 1710 aa29.64■■■□□ 2.33
TPM4-201ENST00000300933 RALBP1Q15311 655 aa29.62■■■□□ 2.33
TPM4-201ENST00000300933 NUTM2DQ5VT03 806 aaPredicted RBP29.61■■■□□ 2.33
TPM4-201ENST00000300933 PPRC1Q5VV67 1664 aaKnown RBP29.6■■■□□ 2.33
TPM4-201ENST00000300933 KTN1Q86UP2 1357 aaKnown RBP29.6■■■□□ 2.33
TPM4-201ENST00000300933 FRMPD1Q5SYB0 1578 aa29.58■■■□□ 2.33
TPM4-201ENST00000300933 EFCAB6Q5THR3 1501 aa29.58■■■□□ 2.33
TPM4-201ENST00000300933 ERICH6Q7L0X2 663 aa29.58■■■□□ 2.33
TPM4-201ENST00000300933 LAMC1P11047 1609 aa29.57■■■□□ 2.32
TPM4-201ENST00000300933 MLH3Q9UHC1 1453 aa29.56■■■□□ 2.32
TPM4-201ENST00000300933 NPATQ14207 1427 aa29.55■■■□□ 2.32
TPM4-201ENST00000300933 RNF17Q9BXT8 1623 aaKnown RBP29.55■■■□□ 2.32
TPM4-201ENST00000300933 FAM69CQ0P6D2 419 aa29.54■■■□□ 2.32
TPM4-201ENST00000300933 HECW2Q9P2P5 1572 aa29.53■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms